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Allow subsetting of intra + inter matrices #33

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cmdoret opened this issue Oct 8, 2019 · 0 comments
Open

Allow subsetting of intra + inter matrices #33

cmdoret opened this issue Oct 8, 2019 · 0 comments
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enhancement New feature or request

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@cmdoret
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cmdoret commented Oct 8, 2019

Currently, hicstuff view allows to subset either an intra-matrix for a continuous region, or an inter-matrix between two discontinous regions.

@aurelepiazza suggested to add an option to subset all contacts (intra and inter) for a number of discontinuous regions in a whole map. For example:

hicstuff view -f frags.txt --multi-region 'chr1;chr3:1-100kb;chr8:100kb-400kb' mat.tsv

To obtain a map with all interactions between and within three regions on different chromossomes.

@cmdoret cmdoret added the enhancement New feature or request label Oct 8, 2019
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