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Fixeskassonlab#86
gmx.fileio.read_tpr() and gmx.fileio.write_tpr_file() work as standalone tools to read, manipulate, and rewrite a TPR file.
We defer several enhancements to other issues, including:
* use in work graphs (see kassonlab#85)
* integration with checkpoint data (see kassonlab#71)
* several missing parameters that should be added to tprfile.cpp (kassonlab#192)
See kassonlab#187 for more discussion.
The TPR file reading/writing and simulation input preparation (#190, #195, etc) need to understand and use checkpoint (.cpt) files.
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