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surv_fit
weights
I think survminer::surv_fit doesn't support the weights argument:
survminer::surv_fit
f2 <- Surv(time, event) ~ x1 km <- surv_fit(f2, data = findf, weights = weights )
results in
Error in model.frame.default(formula = Surv(time, event) ~ : invalid type (closure) for variable '(weights)'
Instead it works correctly with survival::survfit
survival::survfit
session_info()
r$> devtools::session_info() ─ Session info ─────────────────────────────────────────────────────────────────────────── setting value version R version 4.3.2 (2023-10-31) os Arch Linux system x86_64, linux-gnu ui X11 language (EN) collate en_US.UTF-8 ctype en_US.UTF-8 tz Europe/Rome date 2024-03-01 pandoc 3.1.11.1 @ /usr/bin/pandoc ─ Packages ─────────────────────────────────────────────────────────────────────────────── package * version date (UTC) lib source abind 1.4-5 2016-07-21 [1] CRAN (R 4.3.2) backports 1.4.1 2021-12-13 [1] CRAN (R 4.3.2) broom * 1.0.5 2023-06-09 [1] CRAN (R 4.3.2) broom.helpers 1.14.0 2023-08-07 [1] CRAN (R 4.3.2) cachem 1.0.8 2023-05-01 [1] CRAN (R 4.3.2) car 3.1-2 2023-03-30 [1] CRAN (R 4.3.2) carData 3.0-5 2022-01-06 [1] CRAN (R 4.3.2) cellranger 1.1.0 2016-07-27 [1] CRAN (R 4.3.2) cli 3.6.2 2023-12-11 [1] CRAN (R 4.3.2) colorspace 2.1-0 2023-01-23 [1] CRAN (R 4.3.2) data.table 1.15.2 2024-02-29 [1] CRAN (R 4.3.2) devtools 2.4.5 2022-10-11 [1] CRAN (R 4.3.2) digest 0.6.34 2024-01-11 [1] CRAN (R 4.3.2) dplyr * 1.1.4 2023-11-17 [1] CRAN (R 4.3.2) ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.3.2) fansi 1.0.6 2023-12-08 [1] CRAN (R 4.3.2) fastmap 1.1.1 2023-02-24 [1] CRAN (R 4.3.2) forcats * 1.0.0 2023-01-29 [1] CRAN (R 4.3.2) fs 1.6.3 2023-07-20 [1] CRAN (R 4.3.2) generics 0.1.3 2022-07-05 [1] CRAN (R 4.3.2) ggplot2 * 3.5.0 2024-02-23 [1] CRAN (R 4.3.2) ggpubr * 0.6.0 2023-02-10 [1] CRAN (R 4.3.2) ggsignif 0.6.4 2022-10-13 [1] CRAN (R 4.3.2) glue 1.7.0 2024-01-09 [1] CRAN (R 4.3.2) gridExtra 2.3 2017-09-09 [1] CRAN (R 4.3.2) gt 0.10.1 2024-01-17 [1] CRAN (R 4.3.2) gtable 0.3.4 2023-08-21 [1] CRAN (R 4.3.2) gtsummary * 1.7.2 2023-07-15 [1] CRAN (R 4.3.2) hms 1.1.3 2023-03-21 [1] CRAN (R 4.3.2) htmltools 0.5.7 2023-11-03 [1] CRAN (R 4.3.2) htmlwidgets 1.6.4 2023-12-06 [1] CRAN (R 4.3.2) httpuv 1.6.14 2024-01-26 [1] CRAN (R 4.3.2) km.ci 0.5-6 2022-04-06 [1] CRAN (R 4.3.2) KMsurv 0.1-5 2012-12-03 [1] CRAN (R 4.3.2) knitr 1.45 2023-10-30 [1] CRAN (R 4.3.2) labeling 0.4.3 2023-08-29 [1] CRAN (R 4.3.2) later 1.3.2 2023-12-06 [1] CRAN (R 4.3.2) lattice 0.21-9 2023-10-01 [2] CRAN (R 4.3.2) lifecycle 1.0.4 2023-11-07 [1] CRAN (R 4.3.2) lubridate * 1.9.3 2023-09-27 [1] CRAN (R 4.3.2) magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.3.2) Matrix 1.6-1.1 2023-09-18 [2] CRAN (R 4.3.2) memoise 2.0.1 2021-11-26 [1] CRAN (R 4.3.2) mime 0.12 2021-09-28 [1] CRAN (R 4.3.2) miniUI 0.1.1.1 2018-05-18 [1] CRAN (R 4.3.2) munsell 0.5.0 2018-06-12 [1] CRAN (R 4.3.2) pillar 1.9.0 2023-03-22 [1] CRAN (R 4.3.2) pkgbuild 1.4.3 2023-12-10 [1] CRAN (R 4.3.2) pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.3.2) pkgload 1.3.4 2024-01-16 [1] CRAN (R 4.3.2) profvis 0.3.8 2023-05-02 [1] CRAN (R 4.3.2) promises 1.2.1 2023-08-10 [1] CRAN (R 4.3.2) purrr * 1.0.2 2023-08-10 [1] CRAN (R 4.3.2) R6 2.5.1 2021-08-19 [1] CRAN (R 4.3.2) raffalib * 0.1 2024-02-29 [1] local Rcpp 1.0.12 2024-01-09 [1] CRAN (R 4.3.2) readr * 2.1.5 2024-01-10 [1] CRAN (R 4.3.2) readxl * 1.4.3 2023-07-06 [1] CRAN (R 4.3.2) remotes 2.4.2.1 2023-07-18 [1] CRAN (R 4.3.2) rlang 1.1.3 2024-01-10 [1] CRAN (R 4.3.2) rstatix 0.7.2 2023-02-01 [1] CRAN (R 4.3.2) scales 1.3.0 2023-11-28 [1] CRAN (R 4.3.2) sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.3.2) shiny 1.8.0 2023-11-17 [1] CRAN (R 4.3.2) stringi 1.8.3 2023-12-11 [1] CRAN (R 4.3.2) stringr * 1.5.1 2023-11-14 [1] CRAN (R 4.3.2) survival * 3.5-7 2023-08-14 [2] CRAN (R 4.3.2) survminer * 0.4.9 2021-03-09 [1] CRAN (R 4.3.2) survMisc 0.5.6 2022-04-07 [1] CRAN (R 4.3.2) tibble * 3.2.1 2023-03-20 [1] CRAN (R 4.3.2) tidyr * 1.3.1 2024-01-24 [1] CRAN (R 4.3.2) tidyselect 1.2.0 2022-10-10 [1] CRAN (R 4.3.2) tidyverse * 2.0.0 2023-02-22 [1] CRAN (R 4.3.2) timechange 0.3.0 2024-01-18 [1] CRAN (R 4.3.2) tzdb 0.4.0 2023-05-12 [1] CRAN (R 4.3.2) urlchecker 1.0.1 2021-11-30 [1] CRAN (R 4.3.2) usethis 2.2.3 2024-02-19 [1] CRAN (R 4.3.2) utf8 1.2.4 2023-10-22 [1] CRAN (R 4.3.2) vctrs 0.6.5 2023-12-01 [1] CRAN (R 4.3.2) withr 3.0.0 2024-01-16 [1] CRAN (R 4.3.2) xfun 0.42 2024-02-08 [1] CRAN (R 4.3.2) xml2 1.3.6 2023-12-04 [1] CRAN (R 4.3.2) xtable 1.8-4 2019-04-21 [1] CRAN (R 4.3.2) zoo 1.8-12 2023-04-13 [1] CRAN (R 4.3.2) [1] /home/raffaele/R/x86_64-pc-linux-gnu-library/4.3 [2] /usr/lib/R/library ──────────────────────────────────────────────────────────────────────────────────────────
The text was updated successfully, but these errors were encountered:
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Expected behavior
I think
survminer::surv_fit
doesn't support theweights
argument:results in
Instead it works correctly with
survival::survfit
session_info()
The text was updated successfully, but these errors were encountered: