.travis.yml

language: python
env:
  - PYTHON_VERSION=2.7
before_install:
  - wget http://repo.continuum.io/miniconda/Miniconda3-3.7.3-Linux-x86_64.sh -O miniconda.sh
  - chmod +x miniconda.sh
  - ./miniconda.sh -b
  - export PATH=/home/travis/miniconda3/bin:$PATH
  # Update conda itself
  - conda update --yes conda
install:
  - conda create --yes -n env_name python=$PYTHON_VERSION pip nose openpyxl=1.8.2 pandas>=0.15 pyzmq flake8
  - conda install --yes -n env_name python=$PYTHON_VERSION h5py>=2.3.1
  - source activate env_name
  - pip install coveralls cogent burrito qcli burrito-fillings ipython[all]==2.4.1
  - pip install https://github.com/biocore/mustached-octo-ironman/archive/master.zip
  - pip install https://github.com/biocore/qiime/archive/master.zip --no-deps
  - pip install .
  # upgrade click, older versions of click do not have __version__
  - pip install -U click
script:
  - export MOI_CONFIG_FP=`pwd`/qiita_core/support_files/config_test.txt
  - ipython profile create qiita_general --parallel
  - qiita_env start_cluster qiita_general
  - qiita_env make --no-load-ontologies
  - qiita_test_install
  - nosetests --with-doctest --with-coverage
  - flake8 qiita_* setup.py scripts/qiita scripts/qiita_env scripts/qiita_test_install
  # we need to run the test suite from setup.py for coveralls to grab the info
  # - coverage run setup.py test
  # - coverage report -m
services:
  - redis-server
after_success:
  - coveralls