DESCRIPTION

Package: DGEobj.utils
Type:    Package
Title:   Differential Gene Expression (DGE) Analysis Utility Toolkit
Version: 1.0.6
Description:
    Provides a function toolkit to facilitate reproducible RNA-Seq Differential Gene Expression (DGE)
    analysis (Law (2015) <doi:10.12688/f1000research.9005.3>).  The tools include both analysis 
    work-flow and utility functions: mapping/unit conversion, count normalization, accounting for 
    unknown covariates, and more.  This is a complement/cohort to the 'DGEobj' package that 
    provides a flexible container to manage and annotate Differential Gene Expression analysis results.
Authors@R:
    c(person("John", "Thompson", role = "aut", email = "jrt@thompsonclan.org"),
      person("Connie", "Brett",  role = c("aut", "cre"), email = "connie@aggregate-genius.com"),
      person("Isaac", "Neuhaus", role = "aut", email = "isaac.neuhaus@bms.com"),
      person("Ryan", "Thompson", role = "aut", email = "rct@thompsonclan.org"))
Depends:  R (>= 3.5.0)
License:  GPL-3
Language: en-US
Encoding: UTF-8
Imports:
    assertthat,
    DGEobj  (>= 1.0.3),
    dplyr,
    methods,
    stats,
    stringr
Suggests:
    biomaRt,
    canvasXpress,
    conflicted,
    edgeR,
    glue,
    ggplot2,
    IHW,
    limma,
    knitr,
    qvalue,
    RNASeqPower,
    rmarkdown,
    statmod,
    sva,
    testthat,
    zFPKM
biocViews:
RoxygenNote: 7.1.2
VignetteBuilder: knitr