Start_Here.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 23,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Updating HTML index of packages in '.Library'\n",
      "Making 'packages.html' ... done\n"
     ]
    }
   ],
   "source": [
    "install.packages(\"mclust\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 24,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "[1] ‘5.2.2’"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "packageVersion(\"mclust\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 33,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "also installing the dependency ‘SnowballC’\n",
      "\n",
      "Updating HTML index of packages in '.Library'\n",
      "Making 'packages.html' ... done\n"
     ]
    }
   ],
   "source": [
    "install.packages(\"lsa\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 36,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Updating HTML index of packages in '.Library'\n",
      "Making 'packages.html' ... done\n"
     ]
    }
   ],
   "source": [
    "install.packages(\"reshape\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 38,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Updating HTML index of packages in '.Library'\n",
      "Making 'packages.html' ... done\n"
     ]
    }
   ],
   "source": [
    "install.packages(\"pryr\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 39,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "\n",
      "\n",
      "processing file: pipeline.Rmd\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "\r",
      "  |                                                                       \r",
      "  |                                                                 |   0%\r",
      "  |                                                                       \r",
      "  |.                                                                |   1%\n",
      "  ordinary text without R code\n",
      "\n",
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      "  |                                                                       \r",
      "  |.                                                                |   2%\n",
      "label: unnamed-chunk-1 (with options) \n",
      "List of 2\n",
      " $ echo   : symbol F\n",
      " $ warning: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |..                                                               |   3%\n",
      "   inline R code fragments\n",
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      "  |                                                                       \r",
      "  |...                                                              |   4%\n",
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      " $ echo: symbol F\n",
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      "  ordinary text without R code\n",
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      "  |                                                                       \r",
      "  |....                                                             |   6%\n",
      "label: unnamed-chunk-3 (with options) \n",
      "List of 3\n",
      " $ echo   : symbol F\n",
      " $ message: symbol F\n",
      " $ warning: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.....                                                            |   7%\n",
      "  ordinary text without R code\n",
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      "  |                                                                       \r",
      "  |.....                                                            |   8%\n",
      "label: unnamed-chunk-4 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |......                                                           |   9%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.......                                                          |  10%\n",
      "label: unnamed-chunk-5 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.......                                                          |  11%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |........                                                         |  12%\n",
      "label: unnamed-chunk-6 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.........                                                        |  14%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.........                                                        |  15%\n",
      "label: unnamed-chunk-7 (with options) \n",
      "List of 2\n",
      " $ message: symbol F\n",
      " $ echo   : symbol F\n",
      "\n"
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     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Joining, by = c(\"Well\", \"Plate\", \"rep\", \"specificCMPO\", \"specificName\", \"siRNA\", \"EnsemblID\", \"symbol\", \"CMPO term(s)\", \"CMPO ID(s)\", \"IC\", \"tag\", \"class\", \"Edge Features () [0]\", \"Edge Features () [1]\", \"Edge Features () [2]\", \"Edge Features () [3]\", \"Edge Features () [4]\", \"Edge Features () [5]\", \"Edge Features () [6]\", \"Edge Features () [7]\", \"Edge Features () [8]\", \"Edge Features () [9]\", \"Edge Features () [10]\", \"Edge Features () [11]\", \"Edge Features () [12]\", \"Edge Features () [13]\", \"Edge Features () [14]\", \"Edge Features () [15]\", \"Edge Features () [16]\", \"Edge Features () [17]\", \"Edge Features () [18]\", \"Edge Features () [19]\", \"Edge Features () [20]\", \"Edge Features () [21]\", \"Edge Features () [22]\", \"Edge Features () [23]\", \"Edge Features () [24]\", \"Edge Features () [25]\", \"Edge Features () [26]\", \"Edge Features () [27]\", \"Otsu Object Features () [0]\", \"Otsu Object Features () [1]\", \"Otsu Object Features () [2]\", \"Otsu Object Features () [3]\", \"Otsu Object Features () [4]\", \"Otsu Object Features () [5]\", \"Otsu Object Features () [6]\", \"Otsu Object Features () [7]\", \"Otsu Object Features () [8]\", \"Otsu Object Features () [9]\", \"Otsu Object Features () [10]\", \"Otsu Object Features () [11]\", \"Otsu Object Features () [12]\", \"Otsu Object Features () [13]\", \"Otsu Object Features () [14]\", \"Otsu Object Features () [15]\", \"Otsu Object Features () [16]\", \"Otsu Object Features () [17]\", \"Otsu Object Features () [18]\", \"Otsu Object Features () [19]\", \"Otsu Object Features () [20]\", \"Otsu Object Features () [21]\", \"Otsu Object Features () [22]\", \"Otsu Object Features () [23]\", \"Otsu Object Features () [24]\", \"Otsu Object Features () [25]\", \"Otsu Object Features () [26]\", \"Otsu Object Features () [27]\", \"Otsu Object Features () [28]\", \"Otsu Object Features () [29]\", \"Otsu Object Features () [30]\", \"Otsu Object Features () [31]\", \"Otsu Object Features () [32]\", \"Otsu Object Features () [33]\", \"Inverse-Otsu Object Features () [0]\", \"Inverse-Otsu Object Features () [1]\", \"Inverse-Otsu Object Features () [2]\", \"Inverse-Otsu Object Features () [3]\", \"Inverse-Otsu Object Features () [4]\", \"Inverse-Otsu Object Features () [5]\", \"Inverse-Otsu Object Features () [6]\", \"Inverse-Otsu Object Features () [7]\", \"Inverse-Otsu Object Features () [8]\", \"Inverse-Otsu Object Features () [9]\", \"Inverse-Otsu Object Features () [10]\", \"Inverse-Otsu Object Features () [11]\", \"Inverse-Otsu Object Features () [12]\", \"Inverse-Otsu Object Features () [13]\", \"Inverse-Otsu Object Features () [14]\", \"Inverse-Otsu Object Features () [15]\", \"Inverse-Otsu Object Features () [16]\", \"Inverse-Otsu Object Features () [17]\", \"Inverse-Otsu Object Features () [18]\", \"Inverse-Otsu Object Features () [19]\", \"Inverse-Otsu Object Features () [20]\", \"Inverse-Otsu Object Features () [21]\", \"Inverse-Otsu Object Features () [22]\", \"Inverse-Otsu Object Features () [23]\", \"Inverse-Otsu Object Features () [24]\", \"Inverse-Otsu Object Features () [25]\", \"Inverse-Otsu Object Features () [26]\", \"Inverse-Otsu Object Features () [27]\", \"Inverse-Otsu Object Features () [28]\", \"Inverse-Otsu Object Features () [29]\", \"Inverse-Otsu Object Features () [30]\", \"Inverse-Otsu Object Features () [31]\", \"Inverse-Otsu Object Features () [32]\", \"Inverse-Otsu Object Features () [33]\", \"Gabor Textures () [0]\", \"Gabor Textures () [1]\", \"Gabor Textures () [2]\", \"Gabor Textures () [3]\", \"Gabor Textures () [4]\", \"Gabor Textures () [5]\", \"Gabor Textures () [6]\", \"Chebyshev-Fourier Coefficients () [0]\", \"Chebyshev-Fourier Coefficients () [1]\", \"Chebyshev-Fourier Coefficients () [2]\", \"Chebyshev-Fourier Coefficients () [3]\", \"Chebyshev-Fourier Coefficients () [4]\", \"Chebyshev-Fourier Coefficients () [5]\", \"Chebyshev-Fourier Coefficients () [6]\", \"Chebyshev-Fourier Coefficients () [7]\", \"Chebyshev-Fourier Coefficients () [8]\", \"Chebyshev-Fourier Coefficients () [9]\", \"Chebyshev-Fourier Coefficients () [10]\", \"Chebyshev-Fourier Coefficients () [11]\", \"Chebyshev-Fourier Coefficients () [12]\", \"Chebyshev-Fourier Coefficients () [13]\", \"Chebyshev-Fourier Coefficients () [14]\", \"Chebyshev-Fourier Coefficients () [15]\", \"Chebyshev-Fourier Coefficients () [16]\", \"Chebyshev-Fourier Coefficients () [17]\", \"Chebyshev-Fourier Coefficients () [18]\", \"Chebyshev-Fourier Coefficients () [19]\", \"Chebyshev-Fourier Coefficients () [20]\", \"Chebyshev-Fourier Coefficients () [21]\", \"Chebyshev-Fourier Coefficients () [22]\", \"Chebyshev-Fourier Coefficients () [23]\", \"Chebyshev-Fourier Coefficients () [24]\", \"Chebyshev-Fourier Coefficients () [25]\", \"Chebyshev-Fourier Coefficients () [26]\", \"Chebyshev-Fourier Coefficients () [27]\", \"Chebyshev-Fourier Coefficients () [28]\", \"Chebyshev-Fourier Coefficients () 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Coefficients () [25]\", \"Chebyshev Coefficients () [26]\", \"Chebyshev Coefficients () [27]\", \"Chebyshev Coefficients () [28]\", \"Chebyshev Coefficients () [29]\", \"Chebyshev Coefficients () [30]\", \"Chebyshev Coefficients () [31]\", \"Zernike Coefficients () [0]\", \"Zernike Coefficients () [1]\", \"Zernike Coefficients () [2]\", \"Zernike Coefficients () [3]\", \"Zernike Coefficients () [4]\", \"Zernike Coefficients () [5]\", \"Zernike Coefficients () [6]\", \"Zernike Coefficients () [7]\", \"Zernike Coefficients () [8]\", \"Zernike Coefficients () [9]\", \"Zernike Coefficients () [10]\", \"Zernike Coefficients () [11]\", \"Zernike Coefficients () [12]\", \"Zernike Coefficients () [13]\", \"Zernike Coefficients () [14]\", \"Zernike Coefficients () [15]\", \"Zernike Coefficients () [16]\", \"Zernike Coefficients () [17]\", \"Zernike Coefficients () [18]\", \"Zernike Coefficients () [19]\", \"Zernike Coefficients () [20]\", \"Zernike Coefficients () [21]\", \"Zernike Coefficients () [22]\", \"Zernike Coefficients () [23]\", \"Zernike Coefficients () [24]\", \"Zernike Coefficients () [25]\", \"Zernike Coefficients () [26]\", \"Zernike Coefficients () [27]\", \"Zernike Coefficients () [28]\", \"Zernike Coefficients () [29]\", \"Zernike Coefficients () [30]\", \"Zernike Coefficients () [31]\", \"Zernike Coefficients () [32]\", \"Zernike Coefficients () [33]\", \"Zernike Coefficients () [34]\", \"Zernike Coefficients () [35]\", \"Zernike Coefficients () [36]\", \"Zernike Coefficients () [37]\", \"Zernike Coefficients () [38]\", \"Zernike Coefficients () [39]\", \"Zernike Coefficients () [40]\", \"Zernike Coefficients () [41]\", \"Zernike Coefficients () [42]\", \"Zernike Coefficients () [43]\", \"Zernike Coefficients () [44]\", \"Zernike Coefficients () [45]\", \"Zernike Coefficients () [46]\", \"Zernike Coefficients () [47]\", \"Zernike Coefficients () [48]\", \"Zernike Coefficients () [49]\", \"Zernike Coefficients () [50]\", \"Zernike Coefficients () [51]\", \"Zernike Coefficients () [52]\", \"Zernike Coefficients () [53]\", \"Zernike Coefficients () [54]\", \"Zernike Coefficients () [55]\", \"Zernike Coefficients () [56]\", \"Zernike Coefficients () [57]\", \"Zernike Coefficients () [58]\", \"Zernike Coefficients () [59]\", \"Zernike Coefficients () [60]\", \"Zernike Coefficients () [61]\", \"Zernike Coefficients () [62]\", \"Zernike Coefficients () [63]\", \"Zernike Coefficients () [64]\", \"Zernike Coefficients () [65]\", \"Zernike Coefficients () [66]\", \"Zernike Coefficients () [67]\", \"Zernike Coefficients () [68]\", \"Zernike Coefficients () [69]\", \"Zernike Coefficients () [70]\", \"Zernike Coefficients () [71]\", \"Comb Moments () [0]\", \"Comb Moments () [1]\", \"Comb Moments () [2]\", \"Comb Moments () [3]\", \"Comb Moments () [4]\", \"Comb Moments () [5]\", \"Comb Moments () [6]\", \"Comb Moments () [7]\", \"Comb Moments () [8]\", \"Comb Moments () [9]\", \"Comb Moments () [10]\", \"Comb Moments () [11]\", \"Comb Moments () [12]\", \"Comb Moments () [13]\", \"Comb Moments () [14]\", \"Comb Moments () [15]\", \"Comb Moments () [16]\", \"Comb Moments () [17]\", \"Comb Moments () [18]\", \"Comb Moments () [19]\", \"Comb Moments () [20]\", \"Comb Moments () [21]\", \"Comb Moments () [22]\", \"Comb Moments () [23]\", \"Comb Moments () [24]\", \"Comb Moments () [25]\", \"Comb Moments () [26]\", \"Comb Moments () [27]\", \"Comb Moments () [28]\", \"Comb Moments () [29]\", \"Comb Moments () [30]\", \"Comb Moments () [31]\", \"Comb Moments () [32]\", \"Comb Moments () [33]\", \"Comb Moments () [34]\", \"Comb Moments () [35]\", \"Comb Moments () [36]\", \"Comb Moments () [37]\", \"Comb Moments () [38]\", \"Comb Moments () [39]\", \"Comb Moments () [40]\", \"Comb Moments () [41]\", \"Comb Moments () [42]\", \"Comb Moments () [43]\", \"Comb Moments () [44]\", \"Comb Moments () [45]\", \"Comb Moments () [46]\", \"Comb Moments () [47]\", \"Haralick Textures () [0]\", \"Haralick Textures () [1]\", \"Haralick Textures () 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Histograms () [6]\", \"Multiscale Histograms () [7]\", \"Multiscale Histograms () [8]\", \"Multiscale Histograms () [9]\", \"Multiscale Histograms () [10]\", \"Multiscale Histograms () [11]\", \"Multiscale Histograms () [12]\", \"Multiscale Histograms () [13]\", \"Multiscale Histograms () [14]\", \"Multiscale Histograms () [15]\", \"Multiscale Histograms () [16]\", \"Multiscale Histograms () [17]\", \"Multiscale Histograms () [18]\", \"Multiscale Histograms () [19]\", \"Multiscale Histograms () [20]\", \"Multiscale Histograms () [21]\", \"Multiscale Histograms () [22]\", \"Multiscale Histograms () [23]\", \"Tamura Textures () [0]\", \"Tamura Textures () [1]\", \"Tamura Textures () [2]\", \"Tamura Textures () [3]\", \"Tamura Textures () [4]\", \"Tamura Textures () [5]\", \"Radon Coefficients () [0]\", \"Radon Coefficients () [1]\", \"Radon Coefficients () [2]\", \"Radon Coefficients () [3]\", \"Radon Coefficients () [4]\", \"Radon Coefficients () [5]\", \"Radon Coefficients () [6]\", \"Radon Coefficients () [7]\", \"Radon Coefficients () [8]\", \"Radon Coefficients () [9]\", \"Radon Coefficients () [10]\", \"Radon Coefficients () [11]\", \"Fractal Features () [0]\", \"Fractal Features () [1]\", \"Fractal Features () [2]\", \"Fractal Features () [3]\", \"Fractal Features () [4]\", \"Fractal Features () [5]\", \"Fractal Features () [6]\", \"Fractal Features () [7]\", \"Fractal Features () [8]\", \"Fractal Features () [9]\", \"Fractal Features () [10]\", \"Fractal Features () [11]\", \"Fractal Features () [12]\", \"Fractal Features () [13]\", \"Fractal Features () [14]\", \"Fractal Features () [15]\", \"Fractal Features () [16]\", \"Fractal Features () [17]\", \"Fractal Features () [18]\", \"Fractal Features () [19]\", \"Pixel Intensity Statistics () [0]\", \"Pixel Intensity Statistics () [1]\", \"Pixel Intensity Statistics () [2]\", \"Pixel Intensity Statistics () [3]\", \"Pixel Intensity Statistics () [4]\", \"Gini Coefficient () [0]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [0]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [1]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [2]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [3]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [4]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [5]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [6]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [7]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [8]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [9]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [10]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [11]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [12]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [13]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [14]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [15]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [16]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [17]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [18]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [19]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [20]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [21]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [22]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [23]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [24]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [25]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [26]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [27]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [28]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [29]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [30]\", \"Chebyshev-Fourier Coefficients (Fourier ()) [31]\", \"Chebyshev Coefficients (Fourier ()) [0]\", \"Chebyshev Coefficients (Fourier ()) [1]\", \"Chebyshev Coefficients (Fourier ()) [2]\", \"Chebyshev Coefficients (Fourier ()) [3]\", \"Chebyshev Coefficients (Fourier ()) [4]\", \"Chebyshev Coefficients (Fourier ()) [5]\", \"Chebyshev Coefficients 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())) [4]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [5]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [6]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [7]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [8]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [9]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [10]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [11]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [12]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [13]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [14]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [15]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [16]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [17]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [18]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [19]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [20]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [21]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [22]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [23]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [24]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [25]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [26]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [27]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [28]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [29]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [30]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [31]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [0]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [1]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [2]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [3]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [4]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [5]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [6]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [7]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [8]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [9]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [10]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [11]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [12]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [13]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [14]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [15]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [16]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [17]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [18]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [19]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [20]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [21]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [22]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [23]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [24]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [25]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [26]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [27]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [28]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [29]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [30]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [31]\", \"Zernike Coefficients (Wavelet (Edge ())) [0]\", \"Zernike Coefficients (Wavelet (Edge ())) [1]\", \"Zernike Coefficients (Wavelet (Edge ())) [2]\", \"Zernike Coefficients (Wavelet (Edge ())) [3]\", \"Zernike Coefficients (Wavelet (Edge ())) [4]\", \"Zernike Coefficients (Wavelet (Edge ())) [5]\", \"Zernike Coefficients (Wavelet (Edge ())) [6]\", \"Zernike Coefficients (Wavelet (Edge ())) [7]\", \"Zernike Coefficients (Wavelet (Edge ())) [8]\", \"Zernike Coefficients (Wavelet (Edge ())) [9]\", \"Zernike Coefficients (Wavelet (Edge ())) [10]\", \"Zernike Coefficients (Wavelet (Edge ())) [11]\", \"Zernike Coefficients (Wavelet (Edge ())) [12]\", \"Zernike Coefficients (Wavelet (Edge ())) [13]\", \"Zernike Coefficients (Wavelet (Edge ())) [14]\", \"Zernike Coefficients (Wavelet (Edge ())) [15]\", \"Zernike Coefficients (Wavelet (Edge ())) [16]\", \"Zernike Coefficients (Wavelet (Edge ())) [17]\", \"Zernike Coefficients (Wavelet (Edge ())) [18]\", \"Zernike Coefficients (Wavelet (Edge ())) [19]\", \"Zernike Coefficients (Wavelet (Edge ())) [20]\", \"Zernike Coefficients (Wavelet (Edge ())) [21]\", \"Zernike Coefficients (Wavelet (Edge ())) [22]\", \"Zernike Coefficients (Wavelet (Edge ())) [23]\", \"Zernike Coefficients (Wavelet (Edge ())) [24]\", \"Zernike Coefficients (Wavelet (Edge ())) [25]\", \"Zernike Coefficients (Wavelet (Edge ())) [26]\", \"Zernike Coefficients (Wavelet (Edge ())) [27]\", \"Zernike Coefficients (Wavelet (Edge ())) [28]\", \"Zernike Coefficients (Wavelet (Edge ())) [29]\", \"Zernike Coefficients (Wavelet (Edge ())) [30]\", \"Zernike Coefficients (Wavelet (Edge ())) [31]\", \"Zernike Coefficients (Wavelet (Edge ())) [32]\", \"Zernike Coefficients (Wavelet (Edge ())) [33]\", \"Zernike Coefficients (Wavelet (Edge ())) [34]\", \"Zernike Coefficients (Wavelet (Edge ())) [35]\", \"Zernike Coefficients (Wavelet (Edge ())) [36]\", \"Zernike Coefficients (Wavelet (Edge ())) [37]\", \"Zernike Coefficients (Wavelet (Edge ())) [38]\", \"Zernike Coefficients (Wavelet (Edge ())) [39]\", \"Zernike Coefficients (Wavelet (Edge ())) [40]\", \"Zernike Coefficients (Wavelet (Edge ())) [41]\", \"Zernike Coefficients (Wavelet (Edge ())) [42]\", \"Zernike Coefficients (Wavelet (Edge ())) [43]\", \"Zernike Coefficients (Wavelet (Edge ())) [44]\", \"Zernike Coefficients (Wavelet (Edge ())) [45]\", \"Zernike Coefficients (Wavelet (Edge ())) [46]\", \"Zernike Coefficients (Wavelet (Edge ())) [47]\", \"Zernike Coefficients (Wavelet (Edge ())) [48]\", \"Zernike Coefficients (Wavelet (Edge ())) [49]\", \"Zernike Coefficients (Wavelet (Edge ())) [50]\", \"Zernike Coefficients (Wavelet (Edge ())) [51]\", \"Zernike Coefficients (Wavelet (Edge ())) [52]\", \"Zernike Coefficients (Wavelet (Edge ())) [53]\", \"Zernike Coefficients (Wavelet (Edge ())) [54]\", \"Zernike Coefficients (Wavelet (Edge ())) [55]\", \"Zernike Coefficients (Wavelet (Edge ())) [56]\", \"Zernike Coefficients (Wavelet (Edge ())) [57]\", \"Zernike Coefficients (Wavelet (Edge ())) [58]\", \"Zernike Coefficients (Wavelet (Edge ())) [59]\", \"Zernike Coefficients (Wavelet (Edge ())) [60]\", \"Zernike Coefficients (Wavelet (Edge ())) [61]\", \"Zernike Coefficients (Wavelet (Edge ())) [62]\", \"Zernike Coefficients (Wavelet (Edge ())) [63]\", \"Zernike Coefficients (Wavelet (Edge ())) [64]\", \"Zernike Coefficients (Wavelet (Edge ())) [65]\", \"Zernike Coefficients (Wavelet (Edge ())) [66]\", \"Zernike Coefficients (Wavelet (Edge ())) [67]\", \"Zernike Coefficients (Wavelet (Edge ())) [68]\", \"Zernike Coefficients (Wavelet (Edge ())) [69]\", \"Zernike Coefficients (Wavelet (Edge ())) [70]\", \"Zernike Coefficients (Wavelet (Edge ())) [71]\", \"Comb Moments (Wavelet (Edge ())) [0]\", \"Comb Moments (Wavelet (Edge ())) [1]\", \"Comb Moments (Wavelet (Edge ())) [2]\", \"Comb Moments (Wavelet (Edge ())) [3]\", \"Comb Moments (Wavelet (Edge ())) [4]\", \"Comb Moments (Wavelet (Edge ())) [5]\", \"Comb Moments (Wavelet (Edge ())) [6]\", \"Comb Moments (Wavelet (Edge ())) [7]\", \"Comb Moments (Wavelet (Edge ())) [8]\", \"Comb Moments (Wavelet (Edge ())) [9]\", \"Comb Moments (Wavelet (Edge ())) [10]\", \"Comb Moments (Wavelet (Edge ())) [11]\", \"Comb Moments (Wavelet (Edge ())) [12]\", \"Comb Moments (Wavelet (Edge ())) [13]\", \"Comb Moments (Wavelet (Edge ())) [14]\", \"Comb Moments (Wavelet (Edge ())) [15]\", \"Comb Moments (Wavelet (Edge ())) [16]\", \"Comb Moments (Wavelet (Edge ())) [17]\", \"Comb Moments (Wavelet (Edge ())) [18]\", \"Comb Moments (Wavelet (Edge ())) [19]\", \"Comb Moments (Wavelet (Edge ())) [20]\", \"Comb Moments (Wavelet (Edge ())) [21]\", \"Comb Moments (Wavelet (Edge ())) [22]\", \"Comb Moments (Wavelet (Edge ())) [23]\", \"Comb Moments (Wavelet (Edge ())) [24]\", \"Comb Moments (Wavelet (Edge ())) [25]\", \"Comb Moments (Wavelet (Edge ())) [26]\", \"Comb Moments (Wavelet (Edge ())) [27]\", \"Comb Moments (Wavelet (Edge ())) [28]\", \"Comb Moments (Wavelet (Edge ())) [29]\", \"Comb Moments (Wavelet (Edge ())) [30]\", \"Comb Moments (Wavelet (Edge ())) [31]\", \"Comb Moments (Wavelet (Edge ())) [32]\", \"Comb Moments (Wavelet (Edge ())) [33]\", \"Comb Moments (Wavelet (Edge ())) [34]\", \"Comb Moments (Wavelet (Edge ())) [35]\", \"Comb Moments (Wavelet (Edge ())) [36]\", \"Comb Moments (Wavelet (Edge ())) [37]\", \"Comb Moments (Wavelet (Edge ())) [38]\", \"Comb Moments (Wavelet (Edge ())) [39]\", \"Comb Moments (Wavelet (Edge ())) [40]\", \"Comb Moments (Wavelet (Edge ())) [41]\", \"Comb Moments (Wavelet (Edge ())) [42]\", \"Comb Moments (Wavelet (Edge ())) [43]\", \"Comb Moments (Wavelet (Edge ())) [44]\", \"Comb Moments (Wavelet (Edge ())) [45]\", \"Comb Moments (Wavelet (Edge ())) [46]\", \"Comb Moments (Wavelet (Edge ())) [47]\", \"Haralick Textures (Wavelet (Edge ())) [0]\", \"Haralick Textures (Wavelet (Edge ())) [1]\", \"Haralick Textures (Wavelet (Edge ())) [2]\", \"Haralick Textures (Wavelet (Edge ())) [3]\", \"Haralick Textures (Wavelet (Edge ())) [4]\", \"Haralick Textures (Wavelet (Edge ())) [5]\", \"Haralick Textures (Wavelet (Edge ())) [6]\", \"Haralick Textures (Wavelet (Edge ())) [7]\", \"Haralick Textures (Wavelet (Edge ())) [8]\", \"Haralick Textures (Wavelet (Edge ())) [9]\", \"Haralick Textures (Wavelet (Edge ())) [10]\", \"Haralick Textures (Wavelet (Edge ())) [11]\", \"Haralick Textures (Wavelet (Edge ())) [12]\", \"Haralick Textures (Wavelet (Edge ())) [13]\", \"Haralick Textures (Wavelet (Edge ())) [14]\", \"Haralick Textures (Wavelet (Edge ())) [15]\", \"Haralick Textures (Wavelet (Edge ())) [16]\", \"Haralick Textures (Wavelet (Edge ())) [17]\", \"Haralick Textures (Wavelet (Edge ())) [18]\", \"Haralick Textures (Wavelet (Edge ())) [19]\", \"Haralick Textures (Wavelet (Edge ())) [20]\", \"Haralick Textures (Wavelet (Edge ())) [21]\", \"Haralick Textures (Wavelet (Edge ())) [22]\", \"Haralick Textures (Wavelet (Edge ())) [23]\", \"Haralick Textures (Wavelet (Edge ())) [24]\", \"Haralick Textures (Wavelet (Edge ())) [25]\", \"Haralick Textures (Wavelet (Edge ())) [26]\", \"Haralick Textures (Wavelet (Edge ())) [27]\", \"Multiscale Histograms (Wavelet (Edge ())) [0]\", \"Multiscale Histograms (Wavelet (Edge ())) [1]\", \"Multiscale Histograms (Wavelet (Edge ())) [2]\", \"Multiscale Histograms (Wavelet (Edge ())) [3]\", \"Multiscale Histograms (Wavelet (Edge ())) [4]\", \"Multiscale Histograms (Wavelet (Edge ())) [5]\", \"Multiscale Histograms (Wavelet (Edge ())) [6]\", \"Multiscale Histograms (Wavelet (Edge ())) [7]\", \"Multiscale Histograms (Wavelet (Edge ())) [8]\", \"Multiscale Histograms (Wavelet (Edge ())) [9]\", \"Multiscale Histograms (Wavelet (Edge ())) [10]\", \"Multiscale Histograms (Wavelet (Edge ())) [11]\", \"Multiscale Histograms (Wavelet (Edge ())) [12]\", \"Multiscale Histograms (Wavelet (Edge ())) [13]\", \"Multiscale Histograms (Wavelet (Edge ())) [14]\", \"Multiscale Histograms (Wavelet (Edge ())) [15]\", \"Multiscale Histograms (Wavelet (Edge ())) [16]\", \"Multiscale Histograms (Wavelet (Edge ())) [17]\", \"Multiscale Histograms (Wavelet (Edge ())) [18]\", \"Multiscale Histograms (Wavelet (Edge ())) [19]\", \"Multiscale Histograms (Wavelet (Edge ())) [20]\", \"Multiscale Histograms (Wavelet (Edge ())) [21]\", \"Multiscale Histograms (Wavelet (Edge ())) [22]\", \"Multiscale Histograms (Wavelet (Edge ())) [23]\", \"Tamura Textures (Wavelet (Edge ())) [0]\", \"Tamura Textures (Wavelet (Edge ())) [1]\", \"Tamura Textures (Wavelet (Edge ())) [2]\", \"Tamura Textures (Wavelet (Edge ())) [3]\", \"Tamura Textures (Wavelet (Edge ())) [4]\", \"Tamura Textures (Wavelet (Edge ())) [5]\", \"Radon Coefficients (Wavelet (Edge ())) [0]\", \"Radon Coefficients (Wavelet (Edge ())) [1]\", \"Radon Coefficients (Wavelet (Edge ())) [2]\", \"Radon Coefficients (Wavelet (Edge ())) [3]\", \"Radon Coefficients (Wavelet (Edge ())) [4]\", \"Radon Coefficients (Wavelet (Edge ())) [5]\", \"Radon Coefficients (Wavelet (Edge ())) [6]\", \"Radon Coefficients (Wavelet (Edge ())) [7]\", \"Radon Coefficients (Wavelet (Edge ())) [8]\", \"Radon Coefficients (Wavelet (Edge ())) [9]\", \"Radon Coefficients (Wavelet (Edge ())) [10]\", \"Radon Coefficients (Wavelet (Edge ())) [11]\", \"Fractal Features (Wavelet (Edge ())) [0]\", \"Fractal Features (Wavelet (Edge ())) [1]\", \"Fractal Features (Wavelet (Edge ())) [2]\", \"Fractal Features (Wavelet (Edge ())) [3]\", \"Fractal Features (Wavelet (Edge ())) [4]\", \"Fractal Features (Wavelet (Edge ())) [5]\", \"Fractal Features (Wavelet (Edge ())) [6]\", \"Fractal Features (Wavelet (Edge ())) [7]\", \"Fractal Features (Wavelet (Edge ())) [8]\", \"Fractal Features (Wavelet (Edge ())) [9]\", \"Fractal Features (Wavelet (Edge ())) [10]\", \"Fractal Features (Wavelet (Edge ())) [11]\", \"Fractal Features (Wavelet (Edge ())) [12]\", \"Fractal Features (Wavelet (Edge ())) [13]\", \"Fractal Features (Wavelet (Edge ())) [14]\", \"Fractal Features (Wavelet (Edge ())) [15]\", \"Fractal Features (Wavelet (Edge ())) [16]\", \"Fractal Features (Wavelet (Edge ())) [17]\", \"Fractal Features (Wavelet (Edge ())) [18]\", \"Fractal Features (Wavelet (Edge ())) [19]\", \"Pixel Intensity Statistics (Wavelet (Edge ())) [0]\", \"Pixel Intensity Statistics (Wavelet (Edge ())) [1]\", \"Pixel Intensity Statistics (Wavelet (Edge ())) [2]\", \"Pixel Intensity Statistics (Wavelet (Edge ())) [3]\", \"Pixel Intensity Statistics (Wavelet (Edge ())) [4]\", \"Gini Coefficient (Wavelet (Edge ())) [0]\")\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "  |..........                                                       |  16%\n",
      "  ordinary text without R code\n",
      "\n",
      "  |...........                                                      |  17%\n",
      "label: unnamed-chunk-8 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "  |............                                                     |  18%\n",
      "  ordinary text without R code\n",
      "\n",
      "  |............                                                     |  19%\n",
      "label: unnamed-chunk-9 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "  |.............                                                    |  20%\n",
      "  ordinary text without R code\n",
      "\n",
      "  |..............                                                   |  21%\n",
      "label: unnamed-chunk-10 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "  |..............                                                   |  22%\n",
      "  ordinary text without R code\n",
      "\n",
      "  |...............                                                  |  23%\n",
      "label: unnamed-chunk-11 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "  |................                                                 |  24%\n",
      "  ordinary text without R code\n",
      "\n",
      "  |................                                                 |  25%\n",
      "label: unnamed-chunk-12 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "  |.................                                                |  26%\n",
      "  ordinary text without R code\n",
      "\n",
      "  |..................                                               |  27%\n",
      "label: unnamed-chunk-13 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "  |..................                                               |  28%\n",
      "  ordinary text without R code\n",
      "\n",
      "  |...................                                              |  29%\n",
      "label: unnamed-chunk-14 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "  |....................                                             |  30%\n",
      "   inline R code fragments\n",
      "\n",
      "  |....................                                             |  31%\n",
      "label: unnamed-chunk-15 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "  |.....................                                            |  32%\n",
      "  ordinary text without R code\n",
      "\n",
      "  |......................                                           |  33%\n",
      "label: unnamed-chunk-16 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "  |......................                                           |  34%\n",
      "  ordinary text without R code\n",
      "\n",
      "  |.......................                                          |  35%\n",
      "label: unnamed-chunk-17 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "  |........................                                         |  36%\n",
      "  ordinary text without R code\n",
      "\n",
      "  |........................                                         |  38%\n",
      "label: unnamed-chunk-18 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "  |.........................                                        |  39%\n",
      "  ordinary text without R code\n",
      "\n",
      "  |..........................                                       |  40%\n",
      "label: unnamed-chunk-19 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "  |..........................                                       |  41%\n",
      "  ordinary text without R code\n",
      "\n",
      "  |...........................                                      |  42%\n",
      "label: unnamed-chunk-20 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "  |............................                                     |  43%\n",
      "  ordinary text without R code\n",
      "\n",
      "  |............................                                     |  44%\n",
      "label: unnamed-chunk-21 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "  |.............................                                    |  45%\n",
      "  ordinary text without R code\n",
      "\n",
      "  |..............................                                   |  46%\n",
      "label: unnamed-chunk-22 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "  |..............................                                   |  47%\n",
      "  ordinary text without R code\n",
      "\n",
      "  |...............................                                  |  48%\n",
      "label: unnamed-chunk-23 (with options) \n",
      "List of 4\n",
      " $ fig.height: num 4\n",
      " $ fig.width : num 8\n",
      " $ message   : symbol F\n",
      " $ echo      : symbol F\n",
      "\n",
      "  |................................                                 |  49%\n",
      "   inline R code fragments\n",
      "\n",
      "  |................................                                 |  50%\n",
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      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
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      "\n",
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      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
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      "   inline R code fragments\n",
      "\n",
      "  |...................................                              |  54%\n",
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      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "  |....................................                             |  55%\n",
      "  ordinary text without R code\n",
      "\n",
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      "label: unnamed-chunk-27 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
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      "  ordinary text without R code\n",
      "\n",
      "  |......................................                           |  58%\n",
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      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "  |.......................................                          |  59%\n",
      "   inline R code fragments\n",
      "\n",
      "  |.......................................                          |  60%\n",
      "label: unnamed-chunk-29\n",
      "  |........................................                         |  61%\n",
      "  ordinary text without R code\n",
      "\n",
      "  |.........................................                        |  62%\n",
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      "  |.........................................                        |  64%\n",
      "   inline R code fragments\n",
      "\n",
      "  |..........................................                       |  65%\n",
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      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "  |...........................................                      |  66%\n",
      "   inline R code fragments\n",
      "\n",
      "  |...........................................                      |  67%\n",
      "label: unnamed-chunk-32 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "  |............................................                     |  68%\n",
      "  ordinary text without R code\n",
      "\n",
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      "label: unnamed-chunk-33 (with options) \n",
      "List of 2\n",
      " $ echo   : symbol F\n",
      " $ message: symbol F\n",
      "\n",
      "  |.............................................                    |  70%\n",
      "  ordinary text without R code\n",
      "\n",
      "  |..............................................                   |  71%\n",
      "label: unnamed-chunk-34 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "  |...............................................                  |  72%\n",
      "   inline R code fragments\n",
      "\n",
      "  |...............................................                  |  73%\n",
      "label: unnamed-chunk-35 (with options) \n",
      "List of 4\n",
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      " $ fig.width : num 9\n",
      " $ message   : symbol F\n",
      " $ echo      : symbol F\n",
      "\n",
      "  |................................................                 |  74%\n",
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      "\n",
      "  |.................................................                |  75%\n",
      "label: unnamed-chunk-36\n",
      "  |.................................................                |  76%\n",
      "   inline R code fragments\n",
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      "  |...................................................              |  79%\n",
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      "  |....................................................             |  80%\n",
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      "  |.....................................................            |  81%\n",
      "label: unnamed-chunk-39 (with options) \n",
      "List of 1\n",
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      "  |.....................................................            |  82%\n",
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      "  |......................................................           |  83%\n",
      "label: unnamed-chunk-40\n",
      "  |.......................................................          |  84%\n",
      "   inline R code fragments\n",
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      "  |........................................................         |  85%\n",
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      "List of 1\n",
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      "  |........................................................         |  86%\n",
      "  ordinary text without R code\n",
      "\n",
      "  |.........................................................        |  88%\n",
      "label: unnamed-chunk-42 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "  |..........................................................       |  89%\n",
      "  ordinary text without R code\n",
      "\n",
      "  |..........................................................       |  90%\n",
      "label: unnamed-chunk-43 (with options) \n",
      "List of 3\n",
      " $ fig.height: num 10\n",
      " $ fig.width : num 10\n",
      " $ echo      : symbol F\n",
      "\n",
      "  |...........................................................      |  91%\n",
      "  ordinary text without R code\n",
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      "  |............................................................     |  92%\n",
      "label: unnamed-chunk-44 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
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      "  |.............................................................    |  94%\n",
      "label: unnamed-chunk-45 (with options) \n",
      "List of 3\n",
      " $ echo   : symbol F\n",
      " $ warning: symbol F\n",
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      "\n",
      "  |..............................................................   |  95%\n",
      "  ordinary text without R code\n",
      "\n",
      "  |..............................................................   |  96%\n",
      "label: unnamed-chunk-46 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "  |...............................................................  |  97%\n",
      "  ordinary text without R code\n",
      "\n",
      "  |................................................................ |  98%\n",
      "label: unnamed-chunk-47 (with options) \n",
      "List of 3\n",
      " $ echo   : symbol F\n",
      " $ warning: symbol F\n",
      " $ message: symbol F\n",
      "\n",
      "  |................................................................ |  99%\n",
      "  ordinary text without R code\n",
      "\n",
      "  |.................................................................| 100%\n",
      "label: unnamed-chunk-48 (with options) \n",
      "List of 2\n",
      " $ cache: logi FALSE\n",
      " $ echo : symbol F\n",
      "\n",
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    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "output file: pipeline.knit.md\n",
      "\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "/usr/bin/pandoc +RTS -K512m -RTS pipeline.utf8.md --to html --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash --output pipeline.html --smart --email-obfuscation none --self-contained --standalone --section-divs --template /opt/conda/lib/R/library/rmarkdown/rmd/h/default.html --no-highlight --variable highlightjs=1 --variable 'theme:bootstrap' --include-in-header /tmp/RtmpwZBPcY/rmarkdown-str5948afa416.html --mathjax --variable 'mathjax-url:https://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' \n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "\n",
      "Output created: pipeline.html\n"
     ]
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   ],
   "source": [
    "rmarkdown::render('pipeline.Rmd')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 26,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      " Named num [1:352] NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN ...\n",
      " - attr(*, \"names\")= chr [1:352] \"INPP5F_213187_W00002\" \"G6PC3_105918_W00003\" \"INCENP_28431_W00004**********\" \"ABCC3_118151_W00006\" ...\n"
     ]
    }
   ],
   "source": [
    "str(prob_test_belong_control1)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
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       "376"
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      "text/latex": [
       "376"
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       "376"
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    "nrow(data)"
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  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {
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   },
   "outputs": [
    {
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       "NULL"
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     "output_type": "display_data"
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   "source": [
    "data$`Edge Features () [14]`"
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  {
   "cell_type": "code",
   "execution_count": 9,
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       "\t<li>W00365</li>\n",
       "\t<li>W00366</li>\n",
       "\t<li>W00367</li>\n",
       "\t<li>W00368</li>\n",
       "\t<li>W00369</li>\n",
       "\t<li>W00370</li>\n",
       "\t<li>W00371</li>\n",
       "\t<li>W00373</li>\n",
       "\t<li>W00374</li>\n",
       "\t<li>W00375</li>\n",
       "\t<li>W00376</li>\n",
       "\t<li>W00377</li>\n",
       "\t<li>W00378</li>\n",
       "\t<li>W00379</li>\n",
       "\t<li>W00380</li>\n",
       "\t<li>W00381</li>\n",
       "\t<li>W00382</li>\n",
       "\t<li>W00383</li>\n",
       "\t<li>W00384</li>\n",
       "</ol>\n"
      ],
      "text/latex": [
       "\\begin{enumerate*}\n",
       "\\item W00002\n",
       "\\item W00003\n",
       "\\item W00004\n",
       "\\item W00005\n",
       "\\item W00006\n",
       "\\item W00007\n",
       "\\item W00008\n",
       "\\item W00009\n",
       "\\item W00010\n",
       "\\item W00011\n",
       "\\item W00012\n",
       "\\item W00013\n",
       "\\item W00014\n",
       "\\item W00015\n",
       "\\item W00016\n",
       "\\item W00017\n",
       "\\item W00018\n",
       "\\item W00019\n",
       "\\item W00020\n",
       "\\item W00021\n",
       "\\item W00022\n",
       "\\item W00023\n",
       "\\item W00024\n",
       "\\item W00025\n",
       "\\item W00026\n",
       "\\item W00027\n",
       "\\item W00028\n",
       "\\item W00029\n",
       "\\item W00030\n",
       "\\item W00031\n",
       "\\item W00032\n",
       "\\item W00033\n",
       "\\item W00034\n",
       "\\item W00035\n",
       "\\item W00036\n",
       "\\item W00037\n",
       "\\item W00038\n",
       "\\item W00039\n",
       "\\item W00040\n",
       "\\item W00041\n",
       "\\item W00042\n",
       "\\item W00043\n",
       "\\item W00044\n",
       "\\item W00045\n",
       "\\item W00046\n",
       "\\item W00047\n",
       "\\item W00048\n",
       "\\item W00049\n",
       "\\item W00050\n",
       "\\item W00051\n",
       "\\item W00052\n",
       "\\item W00053\n",
       "\\item W00054\n",
       "\\item W00055\n",
       "\\item W00056\n",
       "\\item W00057\n",
       "\\item W00058\n",
       "\\item W00059\n",
       "\\item W00060\n",
       "\\item W00061\n",
       "\\item W00062\n",
       "\\item W00063\n",
       "\\item W00064\n",
       "\\item W00065\n",
       "\\item W00066\n",
       "\\item W00067\n",
       "\\item W00068\n",
       "\\item W00069\n",
       "\\item W00070\n",
       "\\item W00071\n",
       "\\item W00072\n",
       "\\item W00073\n",
       "\\item W00074\n",
       "\\item W00075\n",
       "\\item W00076\n",
       "\\item W00077\n",
       "\\item W00078\n",
       "\\item W00079\n",
       "\\item W00080\n",
       "\\item W00081\n",
       "\\item W00082\n",
       "\\item W00083\n",
       "\\item W00084\n",
       "\\item W00085\n",
       "\\item W00086\n",
       "\\item W00087\n",
       "\\item W00088\n",
       "\\item W00089\n",
       "\\item W00090\n",
       "\\item W00091\n",
       "\\item W00092\n",
       "\\item W00093\n",
       "\\item W00094\n",
       "\\item W00095\n",
       "\\item W00096\n",
       "\\item W00097\n",
       "\\item W00098\n",
       "\\item W00099\n",
       "\\item W00100\n",
       "\\item W00101\n",
       "\\item W00102\n",
       "\\item W00103\n",
       "\\item W00104\n",
       "\\item W00105\n",
       "\\item W00106\n",
       "\\item W00107\n",
       "\\item W00108\n",
       "\\item W00109\n",
       "\\item W00110\n",
       "\\item W00111\n",
       "\\item W00112\n",
       "\\item W00113\n",
       "\\item W00114\n",
       "\\item W00115\n",
       "\\item W00116\n",
       "\\item W00117\n",
       "\\item W00118\n",
       "\\item W00119\n",
       "\\item W00121\n",
       "\\item W00122\n",
       "\\item W00123\n",
       "\\item W00124\n",
       "\\item W00125\n",
       "\\item W00126\n",
       "\\item W00127\n",
       "\\item W00128\n",
       "\\item W00129\n",
       "\\item W00130\n",
       "\\item W00131\n",
       "\\item W00132\n",
       "\\item W00133\n",
       "\\item W00134\n",
       "\\item W00135\n",
       "\\item W00136\n",
       "\\item W00137\n",
       "\\item W00138\n",
       "\\item W00139\n",
       "\\item W00140\n",
       "\\item W00141\n",
       "\\item W00142\n",
       "\\item W00143\n",
       "\\item W00144\n",
       "\\item W00145\n",
       "\\item W00146\n",
       "\\item W00148\n",
       "\\item W00149\n",
       "\\item W00150\n",
       "\\item W00151\n",
       "\\item W00152\n",
       "\\item W00153\n",
       "\\item W00154\n",
       "\\item W00155\n",
       "\\item W00156\n",
       "\\item W00157\n",
       "\\item W00158\n",
       "\\item W00159\n",
       "\\item W00160\n",
       "\\item W00161\n",
       "\\item W00162\n",
       "\\item W00163\n",
       "\\item W00164\n",
       "\\item W00165\n",
       "\\item W00166\n",
       "\\item W00167\n",
       "\\item W00168\n",
       "\\item W00169\n",
       "\\item W00170\n",
       "\\item W00171\n",
       "\\item W00172\n",
       "\\item W00173\n",
       "\\item W00174\n",
       "\\item W00175\n",
       "\\item W00176\n",
       "\\item W00177\n",
       "\\item W00178\n",
       "\\item W00179\n",
       "\\item W00180\n",
       "\\item W00181\n",
       "\\item W00182\n",
       "\\item W00183\n",
       "\\item W00184\n",
       "\\item W00185\n",
       "\\item W00186\n",
       "\\item W00187\n",
       "\\item W00188\n",
       "\\item W00189\n",
       "\\item W00190\n",
       "\\item W00191\n",
       "\\item W00192\n",
       "\\item W00193\n",
       "\\item W00194\n",
       "\\item W00195\n",
       "\\item W00196\n",
       "\\item W00197\n",
       "\\item W00198\n",
       "\\item W00199\n",
       "\\item W00200\n",
       "\\item W00201\n",
       "\\item W00202\n",
       "\\item W00203\n",
       "\\item W00204\n",
       "\\item W00205\n",
       "\\item W00206\n",
       "\\item W00207\n",
       "\\item W00208\n",
       "\\item W00209\n",
       "\\item W00210\n",
       "\\item W00211\n",
       "\\item W00212\n",
       "\\item W00213\n",
       "\\item W00214\n",
       "\\item W00215\n",
       "\\item W00216\n",
       "\\item W00217\n",
       "\\item W00218\n",
       "\\item W00220\n",
       "\\item W00221\n",
       "\\item W00222\n",
       "\\item W00223\n",
       "\\item W00224\n",
       "\\item W00225\n",
       "\\item W00226\n",
       "\\item W00227\n",
       "\\item W00228\n",
       "\\item W00229\n",
       "\\item W00230\n",
       "\\item W00231\n",
       "\\item W00232\n",
       "\\item W00233\n",
       "\\item W00234\n",
       "\\item W00235\n",
       "\\item W00236\n",
       "\\item W00237\n",
       "\\item W00238\n",
       "\\item W00239\n",
       "\\item W00241\n",
       "\\item W00242\n",
       "\\item W00243\n",
       "\\item W00244\n",
       "\\item W00245\n",
       "\\item W00246\n",
       "\\item W00247\n",
       "\\item W00248\n",
       "\\item W00249\n",
       "\\item W00250\n",
       "\\item W00251\n",
       "\\item W00252\n",
       "\\item W00253\n",
       "\\item W00254\n",
       "\\item W00255\n",
       "\\item W00256\n",
       "\\item W00257\n",
       "\\item W00258\n",
       "\\item W00259\n",
       "\\item W00260\n",
       "\\item W00261\n",
       "\\item W00262\n",
       "\\item W00263\n",
       "\\item W00264\n",
       "\\item W00265\n",
       "\\item W00266\n",
       "\\item W00267\n",
       "\\item W00268\n",
       "\\item W00269\n",
       "\\item W00270\n",
       "\\item W00271\n",
       "\\item W00272\n",
       "\\item W00273\n",
       "\\item W00274\n",
       "\\item W00275\n",
       "\\item W00277\n",
       "\\item W00278\n",
       "\\item W00279\n",
       "\\item W00280\n",
       "\\item W00281\n",
       "\\item W00282\n",
       "\\item W00283\n",
       "\\item W00284\n",
       "\\item W00285\n",
       "\\item W00286\n",
       "\\item W00287\n",
       "\\item W00288\n",
       "\\item W00289\n",
       "\\item W00290\n",
       "\\item W00291\n",
       "\\item W00292\n",
       "\\item W00293\n",
       "\\item W00294\n",
       "\\item W00295\n",
       "\\item W00296\n",
       "\\item W00297\n",
       "\\item W00298\n",
       "\\item W00299\n",
       "\\item W00300\n",
       "\\item W00301\n",
       "\\item W00302\n",
       "\\item W00303\n",
       "\\item W00304\n",
       "\\item W00305\n",
       "\\item W00306\n",
       "\\item W00307\n",
       "\\item W00308\n",
       "\\item W00309\n",
       "\\item W00310\n",
       "\\item W00312\n",
       "\\item W00313\n",
       "\\item W00314\n",
       "\\item W00315\n",
       "\\item W00316\n",
       "\\item W00317\n",
       "\\item W00318\n",
       "\\item W00319\n",
       "\\item W00320\n",
       "\\item W00321\n",
       "\\item W00322\n",
       "\\item W00323\n",
       "\\item W00324\n",
       "\\item W00325\n",
       "\\item W00326\n",
       "\\item W00327\n",
       "\\item W00328\n",
       "\\item W00329\n",
       "\\item W00330\n",
       "\\item W00331\n",
       "\\item W00332\n",
       "\\item W00333\n",
       "\\item W00334\n",
       "\\item W00335\n",
       "\\item W00336\n",
       "\\item W00337\n",
       "\\item W00338\n",
       "\\item W00339\n",
       "\\item W00340\n",
       "\\item W00341\n",
       "\\item W00342\n",
       "\\item W00343\n",
       "\\item W00344\n",
       "\\item W00345\n",
       "\\item W00346\n",
       "\\item W00347\n",
       "\\item W00348\n",
       "\\item W00349\n",
       "\\item W00350\n",
       "\\item W00351\n",
       "\\item W00352\n",
       "\\item W00353\n",
       "\\item W00354\n",
       "\\item W00355\n",
       "\\item W00356\n",
       "\\item W00357\n",
       "\\item W00358\n",
       "\\item W00359\n",
       "\\item W00360\n",
       "\\item W00361\n",
       "\\item W00362\n",
       "\\item W00363\n",
       "\\item W00364\n",
       "\\item W00365\n",
       "\\item W00366\n",
       "\\item W00367\n",
       "\\item W00368\n",
       "\\item W00369\n",
       "\\item W00370\n",
       "\\item W00371\n",
       "\\item W00373\n",
       "\\item W00374\n",
       "\\item W00375\n",
       "\\item W00376\n",
       "\\item W00377\n",
       "\\item W00378\n",
       "\\item W00379\n",
       "\\item W00380\n",
       "\\item W00381\n",
       "\\item W00382\n",
       "\\item W00383\n",
       "\\item W00384\n",
       "\\end{enumerate*}\n"
      ],
      "text/markdown": [
       "1. W00002\n",
       "2. W00003\n",
       "3. W00004\n",
       "4. W00005\n",
       "5. W00006\n",
       "6. W00007\n",
       "7. W00008\n",
       "8. W00009\n",
       "9. W00010\n",
       "10. W00011\n",
       "11. W00012\n",
       "12. W00013\n",
       "13. W00014\n",
       "14. W00015\n",
       "15. W00016\n",
       "16. W00017\n",
       "17. W00018\n",
       "18. W00019\n",
       "19. W00020\n",
       "20. W00021\n",
       "21. W00022\n",
       "22. W00023\n",
       "23. W00024\n",
       "24. W00025\n",
       "25. W00026\n",
       "26. W00027\n",
       "27. W00028\n",
       "28. W00029\n",
       "29. W00030\n",
       "30. W00031\n",
       "31. W00032\n",
       "32. W00033\n",
       "33. W00034\n",
       "34. W00035\n",
       "35. W00036\n",
       "36. W00037\n",
       "37. W00038\n",
       "38. W00039\n",
       "39. W00040\n",
       "40. W00041\n",
       "41. W00042\n",
       "42. W00043\n",
       "43. W00044\n",
       "44. W00045\n",
       "45. W00046\n",
       "46. W00047\n",
       "47. W00048\n",
       "48. W00049\n",
       "49. W00050\n",
       "50. W00051\n",
       "51. W00052\n",
       "52. W00053\n",
       "53. W00054\n",
       "54. W00055\n",
       "55. W00056\n",
       "56. W00057\n",
       "57. W00058\n",
       "58. W00059\n",
       "59. W00060\n",
       "60. W00061\n",
       "61. W00062\n",
       "62. W00063\n",
       "63. W00064\n",
       "64. W00065\n",
       "65. W00066\n",
       "66. W00067\n",
       "67. W00068\n",
       "68. W00069\n",
       "69. W00070\n",
       "70. W00071\n",
       "71. W00072\n",
       "72. W00073\n",
       "73. W00074\n",
       "74. W00075\n",
       "75. W00076\n",
       "76. W00077\n",
       "77. W00078\n",
       "78. W00079\n",
       "79. W00080\n",
       "80. W00081\n",
       "81. W00082\n",
       "82. W00083\n",
       "83. W00084\n",
       "84. W00085\n",
       "85. W00086\n",
       "86. W00087\n",
       "87. W00088\n",
       "88. W00089\n",
       "89. W00090\n",
       "90. W00091\n",
       "91. W00092\n",
       "92. W00093\n",
       "93. W00094\n",
       "94. W00095\n",
       "95. W00096\n",
       "96. W00097\n",
       "97. W00098\n",
       "98. W00099\n",
       "99. W00100\n",
       "100. W00101\n",
       "101. W00102\n",
       "102. W00103\n",
       "103. W00104\n",
       "104. W00105\n",
       "105. W00106\n",
       "106. W00107\n",
       "107. W00108\n",
       "108. W00109\n",
       "109. W00110\n",
       "110. W00111\n",
       "111. W00112\n",
       "112. W00113\n",
       "113. W00114\n",
       "114. W00115\n",
       "115. W00116\n",
       "116. W00117\n",
       "117. W00118\n",
       "118. W00119\n",
       "119. W00121\n",
       "120. W00122\n",
       "121. W00123\n",
       "122. W00124\n",
       "123. W00125\n",
       "124. W00126\n",
       "125. W00127\n",
       "126. W00128\n",
       "127. W00129\n",
       "128. W00130\n",
       "129. W00131\n",
       "130. W00132\n",
       "131. W00133\n",
       "132. W00134\n",
       "133. W00135\n",
       "134. W00136\n",
       "135. W00137\n",
       "136. W00138\n",
       "137. W00139\n",
       "138. W00140\n",
       "139. W00141\n",
       "140. W00142\n",
       "141. W00143\n",
       "142. W00144\n",
       "143. W00145\n",
       "144. W00146\n",
       "145. W00148\n",
       "146. W00149\n",
       "147. W00150\n",
       "148. W00151\n",
       "149. W00152\n",
       "150. W00153\n",
       "151. W00154\n",
       "152. W00155\n",
       "153. W00156\n",
       "154. W00157\n",
       "155. W00158\n",
       "156. W00159\n",
       "157. W00160\n",
       "158. W00161\n",
       "159. W00162\n",
       "160. W00163\n",
       "161. W00164\n",
       "162. W00165\n",
       "163. W00166\n",
       "164. W00167\n",
       "165. W00168\n",
       "166. W00169\n",
       "167. W00170\n",
       "168. W00171\n",
       "169. W00172\n",
       "170. W00173\n",
       "171. W00174\n",
       "172. W00175\n",
       "173. W00176\n",
       "174. W00177\n",
       "175. W00178\n",
       "176. W00179\n",
       "177. W00180\n",
       "178. W00181\n",
       "179. W00182\n",
       "180. W00183\n",
       "181. W00184\n",
       "182. W00185\n",
       "183. W00186\n",
       "184. W00187\n",
       "185. W00188\n",
       "186. W00189\n",
       "187. W00190\n",
       "188. W00191\n",
       "189. W00192\n",
       "190. W00193\n",
       "191. W00194\n",
       "192. W00195\n",
       "193. W00196\n",
       "194. W00197\n",
       "195. W00198\n",
       "196. W00199\n",
       "197. W00200\n",
       "198. W00201\n",
       "199. W00202\n",
       "200. W00203\n",
       "201. W00204\n",
       "202. W00205\n",
       "203. W00206\n",
       "204. W00207\n",
       "205. W00208\n",
       "206. W00209\n",
       "207. W00210\n",
       "208. W00211\n",
       "209. W00212\n",
       "210. W00213\n",
       "211. W00214\n",
       "212. W00215\n",
       "213. W00216\n",
       "214. W00217\n",
       "215. W00218\n",
       "216. W00220\n",
       "217. W00221\n",
       "218. W00222\n",
       "219. W00223\n",
       "220. W00224\n",
       "221. W00225\n",
       "222. W00226\n",
       "223. W00227\n",
       "224. W00228\n",
       "225. W00229\n",
       "226. W00230\n",
       "227. W00231\n",
       "228. W00232\n",
       "229. W00233\n",
       "230. W00234\n",
       "231. W00235\n",
       "232. W00236\n",
       "233. W00237\n",
       "234. W00238\n",
       "235. W00239\n",
       "236. W00241\n",
       "237. W00242\n",
       "238. W00243\n",
       "239. W00244\n",
       "240. W00245\n",
       "241. W00246\n",
       "242. W00247\n",
       "243. W00248\n",
       "244. W00249\n",
       "245. W00250\n",
       "246. W00251\n",
       "247. W00252\n",
       "248. W00253\n",
       "249. W00254\n",
       "250. W00255\n",
       "251. W00256\n",
       "252. W00257\n",
       "253. W00258\n",
       "254. W00259\n",
       "255. W00260\n",
       "256. W00261\n",
       "257. W00262\n",
       "258. W00263\n",
       "259. W00264\n",
       "260. W00265\n",
       "261. W00266\n",
       "262. W00267\n",
       "263. W00268\n",
       "264. W00269\n",
       "265. W00270\n",
       "266. W00271\n",
       "267. W00272\n",
       "268. W00273\n",
       "269. W00274\n",
       "270. W00275\n",
       "271. W00277\n",
       "272. W00278\n",
       "273. W00279\n",
       "274. W00280\n",
       "275. W00281\n",
       "276. W00282\n",
       "277. W00283\n",
       "278. W00284\n",
       "279. W00285\n",
       "280. W00286\n",
       "281. W00287\n",
       "282. W00288\n",
       "283. W00289\n",
       "284. W00290\n",
       "285. W00291\n",
       "286. W00292\n",
       "287. W00293\n",
       "288. W00294\n",
       "289. W00295\n",
       "290. W00296\n",
       "291. W00297\n",
       "292. W00298\n",
       "293. W00299\n",
       "294. W00300\n",
       "295. W00301\n",
       "296. W00302\n",
       "297. W00303\n",
       "298. W00304\n",
       "299. W00305\n",
       "300. W00306\n",
       "301. W00307\n",
       "302. W00308\n",
       "303. W00309\n",
       "304. W00310\n",
       "305. W00312\n",
       "306. W00313\n",
       "307. W00314\n",
       "308. W00315\n",
       "309. W00316\n",
       "310. W00317\n",
       "311. W00318\n",
       "312. W00319\n",
       "313. W00320\n",
       "314. W00321\n",
       "315. W00322\n",
       "316. W00323\n",
       "317. W00324\n",
       "318. W00325\n",
       "319. W00326\n",
       "320. W00327\n",
       "321. W00328\n",
       "322. W00329\n",
       "323. W00330\n",
       "324. W00331\n",
       "325. W00332\n",
       "326. W00333\n",
       "327. W00334\n",
       "328. W00335\n",
       "329. W00336\n",
       "330. W00337\n",
       "331. W00338\n",
       "332. W00339\n",
       "333. W00340\n",
       "334. W00341\n",
       "335. W00342\n",
       "336. W00343\n",
       "337. W00344\n",
       "338. W00345\n",
       "339. W00346\n",
       "340. W00347\n",
       "341. W00348\n",
       "342. W00349\n",
       "343. W00350\n",
       "344. W00351\n",
       "345. W00352\n",
       "346. W00353\n",
       "347. W00354\n",
       "348. W00355\n",
       "349. W00356\n",
       "350. W00357\n",
       "351. W00358\n",
       "352. W00359\n",
       "353. W00360\n",
       "354. W00361\n",
       "355. W00362\n",
       "356. W00363\n",
       "357. W00364\n",
       "358. W00365\n",
       "359. W00366\n",
       "360. W00367\n",
       "361. W00368\n",
       "362. W00369\n",
       "363. W00370\n",
       "364. W00371\n",
       "365. W00373\n",
       "366. W00374\n",
       "367. W00375\n",
       "368. W00376\n",
       "369. W00377\n",
       "370. W00378\n",
       "371. W00379\n",
       "372. W00380\n",
       "373. W00381\n",
       "374. W00382\n",
       "375. W00383\n",
       "376. W00384\n",
       "\n",
       "\n"
      ],
      "text/plain": [
       "  [1] W00002 W00003 W00004 W00005 W00006 W00007 W00008 W00009 W00010 W00011\n",
       " [11] W00012 W00013 W00014 W00015 W00016 W00017 W00018 W00019 W00020 W00021\n",
       " [21] W00022 W00023 W00024 W00025 W00026 W00027 W00028 W00029 W00030 W00031\n",
       " [31] W00032 W00033 W00034 W00035 W00036 W00037 W00038 W00039 W00040 W00041\n",
       " [41] W00042 W00043 W00044 W00045 W00046 W00047 W00048 W00049 W00050 W00051\n",
       " [51] W00052 W00053 W00054 W00055 W00056 W00057 W00058 W00059 W00060 W00061\n",
       " [61] W00062 W00063 W00064 W00065 W00066 W00067 W00068 W00069 W00070 W00071\n",
       " [71] W00072 W00073 W00074 W00075 W00076 W00077 W00078 W00079 W00080 W00081\n",
       " [81] W00082 W00083 W00084 W00085 W00086 W00087 W00088 W00089 W00090 W00091\n",
       " [91] W00092 W00093 W00094 W00095 W00096 W00097 W00098 W00099 W00100 W00101\n",
       "[101] W00102 W00103 W00104 W00105 W00106 W00107 W00108 W00109 W00110 W00111\n",
       "[111] W00112 W00113 W00114 W00115 W00116 W00117 W00118 W00119 W00121 W00122\n",
       "[121] W00123 W00124 W00125 W00126 W00127 W00128 W00129 W00130 W00131 W00132\n",
       "[131] W00133 W00134 W00135 W00136 W00137 W00138 W00139 W00140 W00141 W00142\n",
       "[141] W00143 W00144 W00145 W00146 W00148 W00149 W00150 W00151 W00152 W00153\n",
       "[151] W00154 W00155 W00156 W00157 W00158 W00159 W00160 W00161 W00162 W00163\n",
       "[161] W00164 W00165 W00166 W00167 W00168 W00169 W00170 W00171 W00172 W00173\n",
       "[171] W00174 W00175 W00176 W00177 W00178 W00179 W00180 W00181 W00182 W00183\n",
       "[181] W00184 W00185 W00186 W00187 W00188 W00189 W00190 W00191 W00192 W00193\n",
       "[191] W00194 W00195 W00196 W00197 W00198 W00199 W00200 W00201 W00202 W00203\n",
       "[201] W00204 W00205 W00206 W00207 W00208 W00209 W00210 W00211 W00212 W00213\n",
       "[211] W00214 W00215 W00216 W00217 W00218 W00220 W00221 W00222 W00223 W00224\n",
       "[221] W00225 W00226 W00227 W00228 W00229 W00230 W00231 W00232 W00233 W00234\n",
       "[231] W00235 W00236 W00237 W00238 W00239 W00241 W00242 W00243 W00244 W00245\n",
       "[241] W00246 W00247 W00248 W00249 W00250 W00251 W00252 W00253 W00254 W00255\n",
       "[251] W00256 W00257 W00258 W00259 W00260 W00261 W00262 W00263 W00264 W00265\n",
       "[261] W00266 W00267 W00268 W00269 W00270 W00271 W00272 W00273 W00274 W00275\n",
       "[271] W00277 W00278 W00279 W00280 W00281 W00282 W00283 W00284 W00285 W00286\n",
       "[281] W00287 W00288 W00289 W00290 W00291 W00292 W00293 W00294 W00295 W00296\n",
       "[291] W00297 W00298 W00299 W00300 W00301 W00302 W00303 W00304 W00305 W00306\n",
       "[301] W00307 W00308 W00309 W00310 W00312 W00313 W00314 W00315 W00316 W00317\n",
       "[311] W00318 W00319 W00320 W00321 W00322 W00323 W00324 W00325 W00326 W00327\n",
       "[321] W00328 W00329 W00330 W00331 W00332 W00333 W00334 W00335 W00336 W00337\n",
       "[331] W00338 W00339 W00340 W00341 W00342 W00343 W00344 W00345 W00346 W00347\n",
       "[341] W00348 W00349 W00350 W00351 W00352 W00353 W00354 W00355 W00356 W00357\n",
       "[351] W00358 W00359 W00360 W00361 W00362 W00363 W00364 W00365 W00366 W00367\n",
       "[361] W00368 W00369 W00370 W00371 W00373 W00374 W00375 W00376 W00377 W00378\n",
       "[371] W00379 W00380 W00381 W00382 W00383 W00384\n",
       "383 Levels: W00002 W00003 W00004 W00005 W00006 W00007 W00008 W00009 ... W00384"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "data$Well"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<ol class=list-inline>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li>CMPO:0000202|CMPO:0000241</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000030|CMPO:0000345|CMPO:0000202</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000345</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000241</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000202|CMPO:0000318</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000030</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000213|CMPO:0000030|CMPO:0000213|CMPO:0000140|CMPO:0000345</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000213|CMPO:0000236|CMPO:0000237</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000213</li>\n",
       "\t<li>CMPO:0000213</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li>CMPO:0000213|CMPO:0000157|CMPO:0000140|CMPO:0000346</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li>CMPO:0000157|CMPO:0000345</li>\n",
       "\t<li>CMPO:0000140|CMPO:0000345|CMPO:0000346</li>\n",
       "\t<li>CMPO:0000140</li>\n",
       "\t<li>CMPO:0000213|CMPO:0000157|CMPO:0000140</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li>CMPO:0000140</li>\n",
       "\t<li>CMPO:0000241</li>\n",
       "\t<li>CMPO:0000345</li>\n",
       "\t<li>CMPO:0000318</li>\n",
       "\t<li>CMPO:0000318</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000345</li>\n",
       "\t<li>CMPO:0000241</li>\n",
       "\t<li>CMPO:0000346</li>\n",
       "\t<li>CMPO:0000318</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000241</li>\n",
       "\t<li>CMPO:0000213|CMPO:0000157|CMPO:0000326</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000140|CMPO:0000345</li>\n",
       "\t<li>CMPO:0000157|CMPO:0000345</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000241</li>\n",
       "\t<li>CMPO:0000140|CMPO:0000346</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000318</li>\n",
       "\t<li>CMPO:0000345</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000213|CMPO:0000157</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000157|CMPO:0000344|CMPO:0000202</li>\n",
       "\t<li>CMPO:0000345</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000241|CMPO:0000346</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000319</li>\n",
       "\t<li>CMPO:0000345</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000140</li>\n",
       "\t<li>CMPO:0000346</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000213|CMPO:0000318</li>\n",
       "\t<li>CMPO:0000318</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000213</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000213|CMPO:0000157</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000237</li>\n",
       "\t<li>CMPO:0000318</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000202</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000213</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000319</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000345</li>\n",
       "\t<li>CMPO:0000345</li>\n",
       "\t<li>CMPO:0000318</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000140|CMPO:0000345|CMPO:0000202</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000237</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000345</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000236|CMPO:0000237</li>\n",
       "\t<li>CMPO:0000140|CMPO:0000237</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000213|CMPO:0000345</li>\n",
       "\t<li>CMPO:0000140</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000140|CMPO:0000318</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000345</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000213</li>\n",
       "\t<li>CMPO:0000345|CMPO:0000318</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000345|CMPO:0000318</li>\n",
       "\t<li>CMPO:0000318</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000237</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000318</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000345</li>\n",
       "\t<li>CMPO:0000030</li>\n",
       "\t<li>CMPO:0000346</li>\n",
       "\t<li>CMPO:0000140|CMPO:0000318</li>\n",
       "\t<li>CMPO:0000319</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000318</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000213</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000346</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000345</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000213|CMPO:0000318</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000318</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000345</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000140</li>\n",
       "\t<li>CMPO:0000319</li>\n",
       "\t<li>CMPO:0000345</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000140</li>\n",
       "\t<li>CMPO:0000345</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000202</li>\n",
       "\t<li>CMPO:0000202</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000030|CMPO:0000345</li>\n",
       "\t<li>CMPO:0000345</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li>CMPO:0000157</li>\n",
       "\t<li>CMPO:0000213</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000157|CMPO:0000345</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000307|CMPO:0000348|CMPO:0000030|CMPO:0000318</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000241</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000157|CMPO:0000345</li>\n",
       "\t<li>CMPO:0000237</li>\n",
       "\t<li>CMPO:0000345</li>\n",
       "\t<li>CMPO:0000030|CMPO:0000213</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000346</li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li>CMPO:0000140</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000140</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000345</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000213|CMPO:0000346</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000345</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000345</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000140|CMPO:0000345</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000345</li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000346</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000140</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li></li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li>CMPO:0000345</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000140|CMPO:0000345</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000346</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000345</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000345|CMPO:0000346</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li>CMPO:0000237|CMPO:0000346</li>\n",
       "\t<li>CMPO:0000140</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000346</li>\n",
       "\t<li>CMPO:0000346</li>\n",
       "\t<li>CMPO:0000345</li>\n",
       "\t<li></li>\n",
       "\t<li>CMPO:0000030</li>\n",
       "\t<li>CMPO:0000202|CMPO:0000346</li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li>CMPO:0000346|CMPO:0000346</li>\n",
       "\t<li></li>\n",
       "</ol>\n"
      ],
      "text/latex": [
       "\\begin{enumerate*}\n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item CMPO:0000202\\textbar{}CMPO:0000241\n",
       "\\item \n",
       "\\item CMPO:0000030\\textbar{}CMPO:0000345\\textbar{}CMPO:0000202\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000345\n",
       "\\item \n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item \n",
       "\\item CMPO:0000241\n",
       "\\item \n",
       "\\item CMPO:0000202\\textbar{}CMPO:0000318\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000030\n",
       "\\item \n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000213\\textbar{}CMPO:0000030\\textbar{}CMPO:0000213\\textbar{}CMPO:0000140\\textbar{}CMPO:0000345\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000213\\textbar{}CMPO:0000236\\textbar{}CMPO:0000237\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000213\n",
       "\\item CMPO:0000213\n",
       "\\item \n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item CMPO:0000213\\textbar{}CMPO:0000157\\textbar{}CMPO:0000140\\textbar{}CMPO:0000346\n",
       "\\item \n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item CMPO:0000157\\textbar{}CMPO:0000345\n",
       "\\item CMPO:0000140\\textbar{}CMPO:0000345\\textbar{}CMPO:0000346\n",
       "\\item CMPO:0000140\n",
       "\\item CMPO:0000213\\textbar{}CMPO:0000157\\textbar{}CMPO:0000140\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item CMPO:0000140\n",
       "\\item CMPO:0000241\n",
       "\\item CMPO:0000345\n",
       "\\item CMPO:0000318\n",
       "\\item CMPO:0000318\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000345\n",
       "\\item CMPO:0000241\n",
       "\\item CMPO:0000346\n",
       "\\item CMPO:0000318\n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000241\n",
       "\\item CMPO:0000213\\textbar{}CMPO:0000157\\textbar{}CMPO:0000326\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000140\\textbar{}CMPO:0000345\n",
       "\\item CMPO:0000157\\textbar{}CMPO:0000345\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000241\n",
       "\\item CMPO:0000140\\textbar{}CMPO:0000346\n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000318\n",
       "\\item CMPO:0000345\n",
       "\\item \n",
       "\\item CMPO:0000213\\textbar{}CMPO:0000157\n",
       "\\item \n",
       "\\item CMPO:0000157\\textbar{}CMPO:0000344\\textbar{}CMPO:0000202\n",
       "\\item CMPO:0000345\n",
       "\\item \n",
       "\\item CMPO:0000241\\textbar{}CMPO:0000346\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000319\n",
       "\\item CMPO:0000345\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000140\n",
       "\\item CMPO:0000346\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000213\\textbar{}CMPO:0000318\n",
       "\\item CMPO:0000318\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000213\n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000213\\textbar{}CMPO:0000157\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000237\n",
       "\\item CMPO:0000318\n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000202\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000213\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000319\n",
       "\\item \n",
       "\\item CMPO:0000345\n",
       "\\item CMPO:0000345\n",
       "\\item CMPO:0000318\n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000140\\textbar{}CMPO:0000345\\textbar{}CMPO:0000202\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000237\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000345\n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000236\\textbar{}CMPO:0000237\n",
       "\\item CMPO:0000140\\textbar{}CMPO:0000237\n",
       "\\item \n",
       "\\item CMPO:0000213\\textbar{}CMPO:0000345\n",
       "\\item CMPO:0000140\n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000140\\textbar{}CMPO:0000318\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000345\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000213\n",
       "\\item CMPO:0000345\\textbar{}CMPO:0000318\n",
       "\\item \n",
       "\\item CMPO:0000345\\textbar{}CMPO:0000318\n",
       "\\item CMPO:0000318\n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000237\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000318\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000345\n",
       "\\item CMPO:0000030\n",
       "\\item CMPO:0000346\n",
       "\\item CMPO:0000140\\textbar{}CMPO:0000318\n",
       "\\item CMPO:0000319\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000318\n",
       "\\item \n",
       "\\item CMPO:0000213\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000346\n",
       "\\item \n",
       "\\item CMPO:0000345\n",
       "\\item \n",
       "\\item CMPO:0000213\\textbar{}CMPO:0000318\n",
       "\\item \n",
       "\\item CMPO:0000318\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000345\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000140\n",
       "\\item CMPO:0000319\n",
       "\\item CMPO:0000345\n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000140\n",
       "\\item CMPO:0000345\n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000202\n",
       "\\item CMPO:0000202\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000030\\textbar{}CMPO:0000345\n",
       "\\item CMPO:0000345\n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item CMPO:0000157\n",
       "\\item CMPO:0000213\n",
       "\\item \n",
       "\\item CMPO:0000157\\textbar{}CMPO:0000345\n",
       "\\item \n",
       "\\item CMPO:0000307\\textbar{}CMPO:0000348\\textbar{}CMPO:0000030\\textbar{}CMPO:0000318\n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000241\n",
       "\\item \n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000157\\textbar{}CMPO:0000345\n",
       "\\item CMPO:0000237\n",
       "\\item CMPO:0000345\n",
       "\\item CMPO:0000030\\textbar{}CMPO:0000213\n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000346\n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item CMPO:0000140\n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000140\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000345\n",
       "\\item \n",
       "\\item CMPO:0000213\\textbar{}CMPO:0000346\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000345\n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000345\n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000140\\textbar{}CMPO:0000345\n",
       "\\item \n",
       "\\item CMPO:0000345\n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000346\n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000140\n",
       "\\item \n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item \n",
       "\\item \n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item CMPO:0000345\n",
       "\\item \n",
       "\\item CMPO:0000140\\textbar{}CMPO:0000345\n",
       "\\item \n",
       "\\item CMPO:0000346\n",
       "\\item \n",
       "\\item CMPO:0000345\n",
       "\\item \n",
       "\\item CMPO:0000345\\textbar{}CMPO:0000346\n",
       "\\item \n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item CMPO:0000237\\textbar{}CMPO:0000346\n",
       "\\item CMPO:0000140\n",
       "\\item \n",
       "\\item CMPO:0000346\n",
       "\\item CMPO:0000346\n",
       "\\item CMPO:0000345\n",
       "\\item \n",
       "\\item CMPO:0000030\n",
       "\\item CMPO:0000202\\textbar{}CMPO:0000346\n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item CMPO:0000346\\textbar{}CMPO:0000346\n",
       "\\item \n",
       "\\end{enumerate*}\n"
      ],
      "text/markdown": [
       "1. CMPO:0000346|CMPO:0000346\n",
       "2. CMPO:0000346|CMPO:0000346\n",
       "3. CMPO:0000346|CMPO:0000346\n",
       "4. CMPO:0000202|CMPO:0000241\n",
       "5. \n",
       "6. CMPO:0000030|CMPO:0000345|CMPO:0000202\n",
       "7. \n",
       "8. \n",
       "9. \n",
       "10. \n",
       "11. \n",
       "12. CMPO:0000345\n",
       "13. \n",
       "14. CMPO:0000346|CMPO:0000346\n",
       "15. \n",
       "16. CMPO:0000241\n",
       "17. \n",
       "18. CMPO:0000202|CMPO:0000318\n",
       "19. \n",
       "20. \n",
       "21. \n",
       "22. \n",
       "23. CMPO:0000030\n",
       "24. \n",
       "25. CMPO:0000346|CMPO:0000346\n",
       "26. \n",
       "27. \n",
       "28. CMPO:0000213|CMPO:0000030|CMPO:0000213|CMPO:0000140|CMPO:0000345\n",
       "29. \n",
       "30. \n",
       "31. \n",
       "32. \n",
       "33. \n",
       "34. \n",
       "35. \n",
       "36. \n",
       "37. CMPO:0000213|CMPO:0000236|CMPO:0000237\n",
       "38. \n",
       "39. \n",
       "40. \n",
       "41. \n",
       "42. \n",
       "43. \n",
       "44. \n",
       "45. CMPO:0000213\n",
       "46. CMPO:0000213\n",
       "47. \n",
       "48. CMPO:0000346|CMPO:0000346\n",
       "49. CMPO:0000213|CMPO:0000157|CMPO:0000140|CMPO:0000346\n",
       "50. \n",
       "51. CMPO:0000346|CMPO:0000346\n",
       "52. CMPO:0000157|CMPO:0000345\n",
       "53. CMPO:0000140|CMPO:0000345|CMPO:0000346\n",
       "54. CMPO:0000140\n",
       "55. CMPO:0000213|CMPO:0000157|CMPO:0000140\n",
       "56. \n",
       "57. \n",
       "58. \n",
       "59. \n",
       "60. \n",
       "61. \n",
       "62. CMPO:0000346|CMPO:0000346\n",
       "63. CMPO:0000140\n",
       "64. CMPO:0000241\n",
       "65. CMPO:0000345\n",
       "66. CMPO:0000318\n",
       "67. CMPO:0000318\n",
       "68. \n",
       "69. \n",
       "70. \n",
       "71. \n",
       "72. \n",
       "73. CMPO:0000346|CMPO:0000346\n",
       "74. \n",
       "75. \n",
       "76. \n",
       "77. CMPO:0000345\n",
       "78. CMPO:0000241\n",
       "79. CMPO:0000346\n",
       "80. CMPO:0000318\n",
       "81. \n",
       "82. \n",
       "83. CMPO:0000241\n",
       "84. CMPO:0000213|CMPO:0000157|CMPO:0000326\n",
       "85. \n",
       "86. \n",
       "87. \n",
       "88. \n",
       "89. CMPO:0000140|CMPO:0000345\n",
       "90. CMPO:0000157|CMPO:0000345\n",
       "91. \n",
       "92. \n",
       "93. \n",
       "94. \n",
       "95. \n",
       "96. \n",
       "97. \n",
       "98. CMPO:0000241\n",
       "99. CMPO:0000140|CMPO:0000346\n",
       "100. \n",
       "101. \n",
       "102. CMPO:0000318\n",
       "103. CMPO:0000345\n",
       "104. \n",
       "105. CMPO:0000213|CMPO:0000157\n",
       "106. \n",
       "107. CMPO:0000157|CMPO:0000344|CMPO:0000202\n",
       "108. CMPO:0000345\n",
       "109. \n",
       "110. CMPO:0000241|CMPO:0000346\n",
       "111. \n",
       "112. \n",
       "113. \n",
       "114. CMPO:0000319\n",
       "115. CMPO:0000345\n",
       "116. \n",
       "117. \n",
       "118. \n",
       "119. \n",
       "120. CMPO:0000140\n",
       "121. CMPO:0000346\n",
       "122. \n",
       "123. \n",
       "124. \n",
       "125. \n",
       "126. \n",
       "127. \n",
       "128. \n",
       "129. CMPO:0000213|CMPO:0000318\n",
       "130. CMPO:0000318\n",
       "131. \n",
       "132. \n",
       "133. \n",
       "134. \n",
       "135. CMPO:0000213\n",
       "136. \n",
       "137. \n",
       "138. CMPO:0000213|CMPO:0000157\n",
       "139. \n",
       "140. \n",
       "141. \n",
       "142. \n",
       "143. \n",
       "144. CMPO:0000237\n",
       "145. CMPO:0000318\n",
       "146. \n",
       "147. \n",
       "148. CMPO:0000202\n",
       "149. \n",
       "150. \n",
       "151. \n",
       "152. \n",
       "153. CMPO:0000213\n",
       "154. \n",
       "155. \n",
       "156. \n",
       "157. \n",
       "158. CMPO:0000319\n",
       "159. \n",
       "160. CMPO:0000345\n",
       "161. CMPO:0000345\n",
       "162. CMPO:0000318\n",
       "163. \n",
       "164. \n",
       "165. CMPO:0000140|CMPO:0000345|CMPO:0000202\n",
       "166. \n",
       "167. \n",
       "168. \n",
       "169. \n",
       "170. CMPO:0000237\n",
       "171. \n",
       "172. \n",
       "173. \n",
       "174. \n",
       "175. CMPO:0000345\n",
       "176. \n",
       "177. \n",
       "178. CMPO:0000236|CMPO:0000237\n",
       "179. CMPO:0000140|CMPO:0000237\n",
       "180. \n",
       "181. CMPO:0000213|CMPO:0000345\n",
       "182. CMPO:0000140\n",
       "183. \n",
       "184. \n",
       "185. CMPO:0000140|CMPO:0000318\n",
       "186. \n",
       "187. \n",
       "188. \n",
       "189. \n",
       "190. \n",
       "191. CMPO:0000345\n",
       "192. \n",
       "193. \n",
       "194. \n",
       "195. \n",
       "196. \n",
       "197. \n",
       "198. \n",
       "199. \n",
       "200. \n",
       "201. \n",
       "202. \n",
       "203. \n",
       "204. CMPO:0000213\n",
       "205. CMPO:0000345|CMPO:0000318\n",
       "206. \n",
       "207. CMPO:0000345|CMPO:0000318\n",
       "208. CMPO:0000318\n",
       "209. \n",
       "210. \n",
       "211. CMPO:0000237\n",
       "212. \n",
       "213. \n",
       "214. \n",
       "215. \n",
       "216. CMPO:0000318\n",
       "217. \n",
       "218. \n",
       "219. \n",
       "220. \n",
       "221. CMPO:0000345\n",
       "222. CMPO:0000030\n",
       "223. CMPO:0000346\n",
       "224. CMPO:0000140|CMPO:0000318\n",
       "225. CMPO:0000319\n",
       "226. \n",
       "227. \n",
       "228. \n",
       "229. \n",
       "230. \n",
       "231. \n",
       "232. \n",
       "233. \n",
       "234. \n",
       "235. \n",
       "236. \n",
       "237. \n",
       "238. CMPO:0000318\n",
       "239. \n",
       "240. CMPO:0000213\n",
       "241. \n",
       "242. \n",
       "243. \n",
       "244. CMPO:0000346\n",
       "245. \n",
       "246. CMPO:0000345\n",
       "247. \n",
       "248. CMPO:0000213|CMPO:0000318\n",
       "249. \n",
       "250. CMPO:0000318\n",
       "251. \n",
       "252. \n",
       "253. \n",
       "254. \n",
       "255. \n",
       "256. \n",
       "257. \n",
       "258. \n",
       "259. \n",
       "260. \n",
       "261. CMPO:0000345\n",
       "262. \n",
       "263. \n",
       "264. \n",
       "265. \n",
       "266. CMPO:0000140\n",
       "267. CMPO:0000319\n",
       "268. CMPO:0000345\n",
       "269. \n",
       "270. \n",
       "271. CMPO:0000140\n",
       "272. CMPO:0000345\n",
       "273. \n",
       "274. \n",
       "275. CMPO:0000202\n",
       "276. CMPO:0000202\n",
       "277. \n",
       "278. \n",
       "279. \n",
       "280. CMPO:0000030|CMPO:0000345\n",
       "281. CMPO:0000345\n",
       "282. \n",
       "283. \n",
       "284. CMPO:0000346|CMPO:0000346\n",
       "285. CMPO:0000157\n",
       "286. CMPO:0000213\n",
       "287. \n",
       "288. CMPO:0000157|CMPO:0000345\n",
       "289. \n",
       "290. CMPO:0000307|CMPO:0000348|CMPO:0000030|CMPO:0000318\n",
       "291. \n",
       "292. \n",
       "293. CMPO:0000241\n",
       "294. \n",
       "295. CMPO:0000346|CMPO:0000346\n",
       "296. \n",
       "297. \n",
       "298. CMPO:0000346|CMPO:0000346\n",
       "299. \n",
       "300. \n",
       "301. CMPO:0000157|CMPO:0000345\n",
       "302. CMPO:0000237\n",
       "303. CMPO:0000345\n",
       "304. CMPO:0000030|CMPO:0000213\n",
       "305. \n",
       "306. \n",
       "307. CMPO:0000346\n",
       "308. CMPO:0000346|CMPO:0000346\n",
       "309. CMPO:0000140\n",
       "310. \n",
       "311. \n",
       "312. CMPO:0000140\n",
       "313. \n",
       "314. \n",
       "315. \n",
       "316. CMPO:0000345\n",
       "317. \n",
       "318. CMPO:0000213|CMPO:0000346\n",
       "319. \n",
       "320. \n",
       "321. \n",
       "322. CMPO:0000345\n",
       "323. \n",
       "324. \n",
       "325. CMPO:0000345\n",
       "326. \n",
       "327. \n",
       "328. CMPO:0000140|CMPO:0000345\n",
       "329. \n",
       "330. CMPO:0000345\n",
       "331. CMPO:0000346|CMPO:0000346\n",
       "332. \n",
       "333. \n",
       "334. \n",
       "335. \n",
       "336. \n",
       "337. CMPO:0000346\n",
       "338. \n",
       "339. \n",
       "340. CMPO:0000140\n",
       "341. \n",
       "342. CMPO:0000346|CMPO:0000346\n",
       "343. \n",
       "344. \n",
       "345. CMPO:0000346|CMPO:0000346\n",
       "346. CMPO:0000345\n",
       "347. \n",
       "348. CMPO:0000140|CMPO:0000345\n",
       "349. \n",
       "350. CMPO:0000346\n",
       "351. \n",
       "352. CMPO:0000345\n",
       "353. \n",
       "354. CMPO:0000345|CMPO:0000346\n",
       "355. \n",
       "356. CMPO:0000346|CMPO:0000346\n",
       "357. CMPO:0000237|CMPO:0000346\n",
       "358. CMPO:0000140\n",
       "359. \n",
       "360. CMPO:0000346\n",
       "361. CMPO:0000346\n",
       "362. CMPO:0000345\n",
       "363. \n",
       "364. CMPO:0000030\n",
       "365. CMPO:0000202|CMPO:0000346\n",
       "366. CMPO:0000346|CMPO:0000346\n",
       "367. CMPO:0000346|CMPO:0000346\n",
       "368. CMPO:0000346|CMPO:0000346\n",
       "369. CMPO:0000346|CMPO:0000346\n",
       "370. CMPO:0000346|CMPO:0000346\n",
       "371. CMPO:0000346|CMPO:0000346\n",
       "372. CMPO:0000346|CMPO:0000346\n",
       "373. CMPO:0000346|CMPO:0000346\n",
       "374. CMPO:0000346|CMPO:0000346\n",
       "375. CMPO:0000346|CMPO:0000346\n",
       "376. \n",
       "\n",
       "\n"
      ],
      "text/plain": [
       "  [1] CMPO:0000346|CMPO:0000346                                       \n",
       "  [2] CMPO:0000346|CMPO:0000346                                       \n",
       "  [3] CMPO:0000346|CMPO:0000346                                       \n",
       "  [4] CMPO:0000202|CMPO:0000241                                       \n",
       "  [5]                                                                 \n",
       "  [6] CMPO:0000030|CMPO:0000345|CMPO:0000202                          \n",
       "  [7]                                                                 \n",
       "  [8]                                                                 \n",
       "  [9]                                                                 \n",
       " [10]                                                                 \n",
       " [11]                                                                 \n",
       " [12] CMPO:0000345                                                    \n",
       " [13]                                                                 \n",
       " [14] CMPO:0000346|CMPO:0000346                                       \n",
       " [15]                                                                 \n",
       " [16] CMPO:0000241                                                    \n",
       " [17]                                                                 \n",
       " [18] CMPO:0000202|CMPO:0000318                                       \n",
       " [19]                                                                 \n",
       " [20]                                                                 \n",
       " [21]                                                                 \n",
       " [22]                                                                 \n",
       " [23] CMPO:0000030                                                    \n",
       " [24]                                                                 \n",
       " [25] CMPO:0000346|CMPO:0000346                                       \n",
       " [26]                                                                 \n",
       " [27]                                                                 \n",
       " [28] CMPO:0000213|CMPO:0000030|CMPO:0000213|CMPO:0000140|CMPO:0000345\n",
       " [29]                                                                 \n",
       " [30]                                                                 \n",
       " [31]                                                                 \n",
       " [32]                                                                 \n",
       " [33]                                                                 \n",
       " [34]                                                                 \n",
       " [35]                                                                 \n",
       " [36]                                                                 \n",
       " [37] CMPO:0000213|CMPO:0000236|CMPO:0000237                          \n",
       " [38]                                                                 \n",
       " [39]                                                                 \n",
       " [40]                                                                 \n",
       " [41]                                                                 \n",
       " [42]                                                                 \n",
       " [43]                                                                 \n",
       " [44]                                                                 \n",
       " [45] CMPO:0000213                                                    \n",
       " [46] CMPO:0000213                                                    \n",
       " [47]                                                                 \n",
       " [48] CMPO:0000346|CMPO:0000346                                       \n",
       " [49] CMPO:0000213|CMPO:0000157|CMPO:0000140|CMPO:0000346             \n",
       " [50]                                                                 \n",
       " [51] CMPO:0000346|CMPO:0000346                                       \n",
       " [52] CMPO:0000157|CMPO:0000345                                       \n",
       " [53] CMPO:0000140|CMPO:0000345|CMPO:0000346                          \n",
       " [54] CMPO:0000140                                                    \n",
       " [55] CMPO:0000213|CMPO:0000157|CMPO:0000140                          \n",
       " [56]                                                                 \n",
       " [57]                                                                 \n",
       " [58]                                                                 \n",
       " [59]                                                                 \n",
       " [60]                                                                 \n",
       " [61]                                                                 \n",
       " [62] CMPO:0000346|CMPO:0000346                                       \n",
       " [63] CMPO:0000140                                                    \n",
       " [64] CMPO:0000241                                                    \n",
       " [65] CMPO:0000345                                                    \n",
       " [66] CMPO:0000318                                                    \n",
       " [67] CMPO:0000318                                                    \n",
       " [68]                                                                 \n",
       " [69]                                                                 \n",
       " [70]                                                                 \n",
       " [71]                                                                 \n",
       " [72]                                                                 \n",
       " [73] CMPO:0000346|CMPO:0000346                                       \n",
       " [74]                                                                 \n",
       " [75]                                                                 \n",
       " [76]                                                                 \n",
       " [77] CMPO:0000345                                                    \n",
       " [78] CMPO:0000241                                                    \n",
       " [79] CMPO:0000346                                                    \n",
       " [80] CMPO:0000318                                                    \n",
       " [81]                                                                 \n",
       " [82]                                                                 \n",
       " [83] CMPO:0000241                                                    \n",
       " [84] CMPO:0000213|CMPO:0000157|CMPO:0000326                          \n",
       " [85]                                                                 \n",
       " [86]                                                                 \n",
       " [87]                                                                 \n",
       " [88]                                                                 \n",
       " [89] CMPO:0000140|CMPO:0000345                                       \n",
       " [90] CMPO:0000157|CMPO:0000345                                       \n",
       " [91]                                                                 \n",
       " [92]                                                                 \n",
       " [93]                                                                 \n",
       " [94]                                                                 \n",
       " [95]                                                                 \n",
       " [96]                                                                 \n",
       " [97]                                                                 \n",
       " [98] CMPO:0000241                                                    \n",
       " [99] CMPO:0000140|CMPO:0000346                                       \n",
       "[100]                                                                 \n",
       "[101]                                                                 \n",
       "[102] CMPO:0000318                                                    \n",
       "[103] CMPO:0000345                                                    \n",
       "[104]                                                                 \n",
       "[105] CMPO:0000213|CMPO:0000157                                       \n",
       "[106]                                                                 \n",
       "[107] CMPO:0000157|CMPO:0000344|CMPO:0000202                          \n",
       "[108] CMPO:0000345                                                    \n",
       "[109]                                                                 \n",
       "[110] CMPO:0000241|CMPO:0000346                                       \n",
       "[111]                                                                 \n",
       "[112]                                                                 \n",
       "[113]                                                                 \n",
       "[114] CMPO:0000319                                                    \n",
       "[115] CMPO:0000345                                                    \n",
       "[116]                                                                 \n",
       "[117]                                                                 \n",
       "[118]                                                                 \n",
       "[119]                                                                 \n",
       "[120] CMPO:0000140                                                    \n",
       "[121] CMPO:0000346                                                    \n",
       "[122]                                                                 \n",
       "[123]                                                                 \n",
       "[124]                                                                 \n",
       "[125]                                                                 \n",
       "[126]                                                                 \n",
       "[127]                                                                 \n",
       "[128]                                                                 \n",
       "[129] CMPO:0000213|CMPO:0000318                                       \n",
       "[130] CMPO:0000318                                                    \n",
       "[131]                                                                 \n",
       "[132]                                                                 \n",
       "[133]                                                                 \n",
       "[134]                                                                 \n",
       "[135] CMPO:0000213                                                    \n",
       "[136]                                                                 \n",
       "[137]                                                                 \n",
       "[138] CMPO:0000213|CMPO:0000157                                       \n",
       "[139]                                                                 \n",
       "[140]                                                                 \n",
       "[141]                                                                 \n",
       "[142]                                                                 \n",
       "[143]                                                                 \n",
       "[144] CMPO:0000237                                                    \n",
       "[145] CMPO:0000318                                                    \n",
       "[146]                                                                 \n",
       "[147]                                                                 \n",
       "[148] CMPO:0000202                                                    \n",
       "[149]                                                                 \n",
       "[150]                                                                 \n",
       "[151]                                                                 \n",
       "[152]                                                                 \n",
       "[153] CMPO:0000213                                                    \n",
       "[154]                                                                 \n",
       "[155]                                                                 \n",
       "[156]                                                                 \n",
       "[157]                                                                 \n",
       "[158] CMPO:0000319                                                    \n",
       "[159]                                                                 \n",
       "[160] CMPO:0000345                                                    \n",
       "[161] CMPO:0000345                                                    \n",
       "[162] CMPO:0000318                                                    \n",
       "[163]                                                                 \n",
       "[164]                                                                 \n",
       "[165] CMPO:0000140|CMPO:0000345|CMPO:0000202                          \n",
       "[166]                                                                 \n",
       "[167]                                                                 \n",
       "[168]                                                                 \n",
       "[169]                                                                 \n",
       "[170] CMPO:0000237                                                    \n",
       "[171]                                                                 \n",
       "[172]                                                                 \n",
       "[173]                                                                 \n",
       "[174]                                                                 \n",
       "[175] CMPO:0000345                                                    \n",
       "[176]                                                                 \n",
       "[177]                                                                 \n",
       "[178] CMPO:0000236|CMPO:0000237                                       \n",
       "[179] CMPO:0000140|CMPO:0000237                                       \n",
       "[180]                                                                 \n",
       "[181] CMPO:0000213|CMPO:0000345                                       \n",
       "[182] CMPO:0000140                                                    \n",
       "[183]                                                                 \n",
       "[184]                                                                 \n",
       "[185] CMPO:0000140|CMPO:0000318                                       \n",
       "[186]                                                                 \n",
       "[187]                                                                 \n",
       "[188]                                                                 \n",
       "[189]                                                                 \n",
       "[190]                                                                 \n",
       "[191] CMPO:0000345                                                    \n",
       "[192]                                                                 \n",
       "[193]                                                                 \n",
       "[194]                                                                 \n",
       "[195]                                                                 \n",
       "[196]                                                                 \n",
       "[197]                                                                 \n",
       "[198]                                                                 \n",
       "[199]                                                                 \n",
       "[200]                                                                 \n",
       "[201]                                                                 \n",
       "[202]                                                                 \n",
       "[203]                                                                 \n",
       "[204] CMPO:0000213                                                    \n",
       "[205] CMPO:0000345|CMPO:0000318                                       \n",
       "[206]                                                                 \n",
       "[207] CMPO:0000345|CMPO:0000318                                       \n",
       "[208] CMPO:0000318                                                    \n",
       "[209]                                                                 \n",
       "[210]                                                                 \n",
       "[211] CMPO:0000237                                                    \n",
       "[212]                                                                 \n",
       "[213]                                                                 \n",
       "[214]                                                                 \n",
       "[215]                                                                 \n",
       "[216] CMPO:0000318                                                    \n",
       "[217]                                                                 \n",
       "[218]                                                                 \n",
       "[219]                                                                 \n",
       "[220]                                                                 \n",
       "[221] CMPO:0000345                                                    \n",
       "[222] CMPO:0000030                                                    \n",
       "[223] CMPO:0000346                                                    \n",
       "[224] CMPO:0000140|CMPO:0000318                                       \n",
       "[225] CMPO:0000319                                                    \n",
       "[226]                                                                 \n",
       "[227]                                                                 \n",
       "[228]                                                                 \n",
       "[229]                                                                 \n",
       "[230]                                                                 \n",
       "[231]                                                                 \n",
       "[232]                                                                 \n",
       "[233]                                                                 \n",
       "[234]                                                                 \n",
       "[235]                                                                 \n",
       "[236]                                                                 \n",
       "[237]                                                                 \n",
       "[238] CMPO:0000318                                                    \n",
       "[239]                                                                 \n",
       "[240] CMPO:0000213                                                    \n",
       "[241]                                                                 \n",
       "[242]                                                                 \n",
       "[243]                                                                 \n",
       "[244] CMPO:0000346                                                    \n",
       "[245]                                                                 \n",
       "[246] CMPO:0000345                                                    \n",
       "[247]                                                                 \n",
       "[248] CMPO:0000213|CMPO:0000318                                       \n",
       "[249]                                                                 \n",
       "[250] CMPO:0000318                                                    \n",
       "[251]                                                                 \n",
       "[252]                                                                 \n",
       "[253]                                                                 \n",
       "[254]                                                                 \n",
       "[255]                                                                 \n",
       "[256]                                                                 \n",
       "[257]                                                                 \n",
       "[258]                                                                 \n",
       "[259]                                                                 \n",
       "[260]                                                                 \n",
       "[261] CMPO:0000345                                                    \n",
       "[262]                                                                 \n",
       "[263]                                                                 \n",
       "[264]                                                                 \n",
       "[265]                                                                 \n",
       "[266] CMPO:0000140                                                    \n",
       "[267] CMPO:0000319                                                    \n",
       "[268] CMPO:0000345                                                    \n",
       "[269]                                                                 \n",
       "[270]                                                                 \n",
       "[271] CMPO:0000140                                                    \n",
       "[272] CMPO:0000345                                                    \n",
       "[273]                                                                 \n",
       "[274]                                                                 \n",
       "[275] CMPO:0000202                                                    \n",
       "[276] CMPO:0000202                                                    \n",
       "[277]                                                                 \n",
       "[278]                                                                 \n",
       "[279]                                                                 \n",
       "[280] CMPO:0000030|CMPO:0000345                                       \n",
       "[281] CMPO:0000345                                                    \n",
       "[282]                                                                 \n",
       "[283]                                                                 \n",
       "[284] CMPO:0000346|CMPO:0000346                                       \n",
       "[285] CMPO:0000157                                                    \n",
       "[286] CMPO:0000213                                                    \n",
       "[287]                                                                 \n",
       "[288] CMPO:0000157|CMPO:0000345                                       \n",
       "[289]                                                                 \n",
       "[290] CMPO:0000307|CMPO:0000348|CMPO:0000030|CMPO:0000318             \n",
       "[291]                                                                 \n",
       "[292]                                                                 \n",
       "[293] CMPO:0000241                                                    \n",
       "[294]                                                                 \n",
       "[295] CMPO:0000346|CMPO:0000346                                       \n",
       "[296]                                                                 \n",
       "[297]                                                                 \n",
       "[298] CMPO:0000346|CMPO:0000346                                       \n",
       "[299]                                                                 \n",
       "[300]                                                                 \n",
       "[301] CMPO:0000157|CMPO:0000345                                       \n",
       "[302] CMPO:0000237                                                    \n",
       "[303] CMPO:0000345                                                    \n",
       "[304] CMPO:0000030|CMPO:0000213                                       \n",
       "[305]                                                                 \n",
       "[306]                                                                 \n",
       "[307] CMPO:0000346                                                    \n",
       "[308] CMPO:0000346|CMPO:0000346                                       \n",
       "[309] CMPO:0000140                                                    \n",
       "[310]                                                                 \n",
       "[311]                                                                 \n",
       "[312] CMPO:0000140                                                    \n",
       "[313]                                                                 \n",
       "[314]                                                                 \n",
       "[315]                                                                 \n",
       "[316] CMPO:0000345                                                    \n",
       "[317]                                                                 \n",
       "[318] CMPO:0000213|CMPO:0000346                                       \n",
       "[319]                                                                 \n",
       "[320]                                                                 \n",
       "[321]                                                                 \n",
       "[322] CMPO:0000345                                                    \n",
       "[323]                                                                 \n",
       "[324]                                                                 \n",
       "[325] CMPO:0000345                                                    \n",
       "[326]                                                                 \n",
       "[327]                                                                 \n",
       "[328] CMPO:0000140|CMPO:0000345                                       \n",
       "[329]                                                                 \n",
       "[330] CMPO:0000345                                                    \n",
       "[331] CMPO:0000346|CMPO:0000346                                       \n",
       "[332]                                                                 \n",
       "[333]                                                                 \n",
       "[334]                                                                 \n",
       "[335]                                                                 \n",
       "[336]                                                                 \n",
       "[337] CMPO:0000346                                                    \n",
       "[338]                                                                 \n",
       "[339]                                                                 \n",
       "[340] CMPO:0000140                                                    \n",
       "[341]                                                                 \n",
       "[342] CMPO:0000346|CMPO:0000346                                       \n",
       "[343]                                                                 \n",
       "[344]                                                                 \n",
       "[345] CMPO:0000346|CMPO:0000346                                       \n",
       "[346] CMPO:0000345                                                    \n",
       "[347]                                                                 \n",
       "[348] CMPO:0000140|CMPO:0000345                                       \n",
       "[349]                                                                 \n",
       "[350] CMPO:0000346                                                    \n",
       "[351]                                                                 \n",
       "[352] CMPO:0000345                                                    \n",
       "[353]                                                                 \n",
       "[354] CMPO:0000345|CMPO:0000346                                       \n",
       "[355]                                                                 \n",
       "[356] CMPO:0000346|CMPO:0000346                                       \n",
       "[357] CMPO:0000237|CMPO:0000346                                       \n",
       "[358] CMPO:0000140                                                    \n",
       "[359]                                                                 \n",
       "[360] CMPO:0000346                                                    \n",
       "[361] CMPO:0000346                                                    \n",
       "[362] CMPO:0000345                                                    \n",
       "[363]                                                                 \n",
       "[364] CMPO:0000030                                                    \n",
       "[365] CMPO:0000202|CMPO:0000346                                       \n",
       "[366] CMPO:0000346|CMPO:0000346                                       \n",
       "[367] CMPO:0000346|CMPO:0000346                                       \n",
       "[368] CMPO:0000346|CMPO:0000346                                       \n",
       "[369] CMPO:0000346|CMPO:0000346                                       \n",
       "[370] CMPO:0000346|CMPO:0000346                                       \n",
       "[371] CMPO:0000346|CMPO:0000346                                       \n",
       "[372] CMPO:0000346|CMPO:0000346                                       \n",
       "[373] CMPO:0000346|CMPO:0000346                                       \n",
       "[374] CMPO:0000346|CMPO:0000346                                       \n",
       "[375] CMPO:0000346|CMPO:0000346                                       \n",
       "[376]                                                                 \n",
       "77 Levels:  CMPO:0000030 ... CMPO:0000346|CMPO:0000346|CMPO:0000319"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "data$`CMPO ID(s)`"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
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       "\t<li>target</li>\n",
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       "\t<li>target</li>\n",
       "\t<li>target</li>\n",
       "\t<li>target</li>\n",
       "\t<li>target</li>\n",
       "\t<li>target</li>\n",
       "\t<li>target</li>\n",
       "\t<li>target</li>\n",
       "\t<li>target</li>\n",
       "\t<li>target</li>\n",
       "\t<li>target</li>\n",
       "\t<li>target</li>\n",
       "\t<li>target</li>\n",
       "\t<li>target</li>\n",
       "\t<li>target</li>\n",
       "\t<li>target</li>\n",
       "\t<li>target</li>\n",
       "\t<li>target</li>\n",
       "\t<li>target</li>\n",
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       "\t<li>target</li>\n",
       "\t<li>target</li>\n",
       "\t<li>target</li>\n",
       "\t<li>target</li>\n",
       "</ol>\n"
      ],
      "text/latex": [
       "\\begin{enumerate*}\n",
       "\\item target\n",
       "\\item target\n",
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       "\\item notarget\n",
       "\\item target\n",
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       "\\end{enumerate*}\n"
      ],
      "text/markdown": [
       "1. target\n",
       "2. target\n",
       "3. target\n",
       "4. notarget\n",
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       "\n",
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      ],
      "text/plain": [
       "  [1] target   target   target   notarget target   target   target   target  \n",
       "  [9] target   target   target   notarget target   notarget target   target  \n",
       " [17] target   target   target   target   target   target   target   target  \n",
       " [25] notarget target   target   target   target   target   notarget target  \n",
       " [33] target   target   target   target   target   target   target   target  \n",
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       " [57] target   target   target   target   target   notarget target   notarget\n",
       " [65] target   target   target   target   target   target   target   target  \n",
       " [73] notarget target   target   target   target   target   target   target  \n",
       " [81] target   target   target   target   target   notarget target   notarget\n",
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       "[169] target   target   target   target   target   target   notarget target  \n",
       "[177] target   notarget target   target   target   target   target   target  \n",
       "[185] target   target   target   notarget target   notarget target   target  \n",
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       "[217] target   target   target   target   target   target   target   target  \n",
       "[225] target   notarget target   target   notarget target   target   target  \n",
       "[233] target   target   target   target   target   target   target   notarget\n",
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       "[297] target   notarget target   target   target   target   target   notarget\n",
       "[305] target   target   target   notarget target   target   target   target  \n",
       "[313] target   target   target   target   target   target   target   target  \n",
       "[321] target   notarget target   target   target   target   target   target  \n",
       "[329] target   target   target   target   target   target   target   target  \n",
       "[337] target   target   target   target   target   target   target   target  \n",
       "[345] notarget target   target   target   target   target   target   target  \n",
       "[353] target   target   target   target   target   target   target   target  \n",
       "[361] target   target   target   target   target   target   target   target  \n",
       "[369] target   target   target   target   target   target   target   target  \n",
       "Levels: notarget target"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "data$class"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "NULL"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "data$`Edge Features () [0]`"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<table>\n",
       "<thead><tr><th></th><th scope=col>Edge Features () [0]</th><th scope=col>Edge Features () [1]</th><th scope=col>Edge Features () [2]</th><th scope=col>Edge Features () [3]</th><th scope=col>Edge Features () [4]</th></tr></thead>\n",
       "<tbody>\n",
       "\t<tr><th scope=row>1</th><td> 72881     </td><td>0.002463829</td><td>0.007256078</td><td>0.005992716</td><td>0.01192322 </td></tr>\n",
       "\t<tr><th scope=row>11</th><td>133875     </td><td>0.004032808</td><td>0.008914484</td><td>0.005692489</td><td>0.01932862 </td></tr>\n",
       "\t<tr><th scope=row>21</th><td>107581     </td><td>0.007088513</td><td>0.006449634</td><td>0.006486054</td><td>0.01309865 </td></tr>\n",
       "</tbody>\n",
       "</table>\n"
      ],
      "text/latex": [
       "\\begin{tabular}{r|lllll}\n",
       "  & Edge Features () {[}0{]} & Edge Features () {[}1{]} & Edge Features () {[}2{]} & Edge Features () {[}3{]} & Edge Features () {[}4{]}\\\\\n",
       "\\hline\n",
       "\t1 &  72881      & 0.002463829 & 0.007256078 & 0.005992716 & 0.01192322 \\\\\n",
       "\t11 & 133875      & 0.004032808 & 0.008914484 & 0.005692489 & 0.01932862 \\\\\n",
       "\t21 & 107581      & 0.007088513 & 0.006449634 & 0.006486054 & 0.01309865 \\\\\n",
       "\\end{tabular}\n"
      ],
      "text/markdown": [
       "\n",
       "| <!--/--> | Edge Features () [0] | Edge Features () [1] | Edge Features () [2] | Edge Features () [3] | Edge Features () [4] | \n",
       "|---|---|---|\n",
       "| 1 |  72881      | 0.002463829 | 0.007256078 | 0.005992716 | 0.01192322  | \n",
       "| 11 | 133875      | 0.004032808 | 0.008914484 | 0.005692489 | 0.01932862  | \n",
       "| 21 | 107581      | 0.007088513 | 0.006449634 | 0.006486054 | 0.01309865  | \n",
       "\n",
       "\n"
      ],
      "text/plain": [
       "   Edge Features () [0] Edge Features () [1] Edge Features () [2]\n",
       "1   72881               0.002463829          0.007256078         \n",
       "11 133875               0.004032808          0.008914484         \n",
       "21 107581               0.007088513          0.006449634         \n",
       "   Edge Features () [3] Edge Features () [4]\n",
       "1  0.005992716          0.01192322          \n",
       "11 0.005692489          0.01932862          \n",
       "21 0.006486054          0.01309865          "
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "originalFeatures[1:3,1:5]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 14,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<table>\n",
       "<thead><tr><th></th><th scope=col>class</th><th scope=col>PC1</th><th scope=col>PC2</th><th scope=col>PC3</th></tr></thead>\n",
       "<tbody>\n",
       "\t<tr><th scope=row>1</th><td>target    </td><td>-2.297227 </td><td> 3.0719257</td><td>7.171821  </td></tr>\n",
       "\t<tr><th scope=row>11</th><td>target    </td><td>-2.837090 </td><td>-1.6041712</td><td>5.607867  </td></tr>\n",
       "\t<tr><th scope=row>21</th><td>target    </td><td>-2.550193 </td><td> 0.3354151</td><td>7.985194  </td></tr>\n",
       "</tbody>\n",
       "</table>\n"
      ],
      "text/latex": [
       "\\begin{tabular}{r|llll}\n",
       "  & class & PC1 & PC2 & PC3\\\\\n",
       "\\hline\n",
       "\t1 & target     & -2.297227  &  3.0719257 & 7.171821  \\\\\n",
       "\t11 & target     & -2.837090  & -1.6041712 & 5.607867  \\\\\n",
       "\t21 & target     & -2.550193  &  0.3354151 & 7.985194  \\\\\n",
       "\\end{tabular}\n"
      ],
      "text/markdown": [
       "\n",
       "| <!--/--> | class | PC1 | PC2 | PC3 | \n",
       "|---|---|---|\n",
       "| 1 | target     | -2.297227  |  3.0719257 | 7.171821   | \n",
       "| 11 | target     | -2.837090  | -1.6041712 | 5.607867   | \n",
       "| 21 | target     | -2.550193  |  0.3354151 | 7.985194   | \n",
       "\n",
       "\n"
      ],
      "text/plain": [
       "   class  PC1       PC2        PC3     \n",
       "1  target -2.297227  3.0719257 7.171821\n",
       "11 target -2.837090 -1.6041712 5.607867\n",
       "21 target -2.550193  0.3354151 7.985194"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "data[1:3,14:17]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 15,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "----------------------------------------------------\n",
       "Gaussian finite mixture model fitted by EM algorithm \n",
       "----------------------------------------------------\n",
       "\n",
       "Mclust EVE (ellipsoidal, equal volume and orientation) model with 2 components:\n",
       "\n",
       " log.likelihood  n df       BIC       ICL\n",
       "      -530.0159 24 85 -1330.166 -1330.167\n",
       "\n",
       "Clustering table:\n",
       " 1  2 \n",
       "14 10 "
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "summary(cc_gmm)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<table>\n",
       "<tbody>\n",
       "\t<tr><th scope=row>INPP5F_213187_W00002</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>G6PC3_105918_W00003</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>INCENP_28431_W00004**********</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>ABCC3_118151_W00006</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>INPP5A_16501_W00007</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>LHPP_105893_W00008</th><td>NaN</td><td>NaN</td></tr>\n",
       "</tbody>\n",
       "</table>\n"
      ],
      "text/latex": [
       "\\begin{tabular}{r|ll}\n",
       "\tINPP5F\\_213187\\_W00002 & NaN & NaN\\\\\n",
       "\tG6PC3\\_105918\\_W00003 & NaN & NaN\\\\\n",
       "\tINCENP\\_28431\\_W00004********** & NaN & NaN\\\\\n",
       "\tABCC3\\_118151\\_W00006 & NaN & NaN\\\\\n",
       "\tINPP5A\\_16501\\_W00007 & NaN & NaN\\\\\n",
       "\tLHPP\\_105893\\_W00008 & NaN & NaN\\\\\n",
       "\\end{tabular}\n"
      ],
      "text/markdown": [
       "\n",
       "| INPP5F_213187_W00002 | NaN | NaN | \n",
       "| G6PC3_105918_W00003 | NaN | NaN | \n",
       "| INCENP_28431_W00004********** | NaN | NaN | \n",
       "| ABCC3_118151_W00006 | NaN | NaN | \n",
       "| INPP5A_16501_W00007 | NaN | NaN | \n",
       "| LHPP_105893_W00008 | NaN | NaN | \n",
       "\n",
       "\n"
      ],
      "text/plain": [
       "                              [,1] [,2]\n",
       "INPP5F_213187_W00002          NaN  NaN \n",
       "G6PC3_105918_W00003           NaN  NaN \n",
       "INCENP_28431_W00004********** NaN  NaN \n",
       "ABCC3_118151_W00006           NaN  NaN \n",
       "INPP5A_16501_W00007           NaN  NaN \n",
       "LHPP_105893_W00008            NaN  NaN "
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "head(probs)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 17,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "List of 2\n",
      " $ classification: int(0) \n",
      " $ z             : num [1:352, 1:2] NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN ...\n",
      "  ..- attr(*, \"logarithm\")= logi FALSE\n",
      "  ..- attr(*, \"modelName\")= chr \"EVE\"\n",
      "  ..- attr(*, \"returnCode\")= num 0\n",
      "  ..- attr(*, \"dimnames\")=List of 2\n",
      "  .. ..$ : chr [1:352] \"INPP5F_213187_W00002\" \"G6PC3_105918_W00003\" \"INCENP_28431_W00004**********\" \"ABCC3_118151_W00006\" ...\n",
      "  .. ..$ : NULL\n"
     ]
    }
   ],
   "source": [
    "str(pred_testImages)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 18,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<table>\n",
       "<thead><tr><th></th><th scope=col>PC1</th><th scope=col>PC2</th><th scope=col>PC3</th><th scope=col>PC4</th></tr></thead>\n",
       "<tbody>\n",
       "\t<tr><th scope=row>INPP5F_213187_W00002</th><td>-2.297227  </td><td> 3.0719257 </td><td> 7.171821  </td><td> 1.85954551</td></tr>\n",
       "\t<tr><th scope=row>G6PC3_105918_W00003</th><td>-2.837090  </td><td>-1.6041712 </td><td> 5.607867  </td><td>-0.46411312</td></tr>\n",
       "\t<tr><th scope=row>INCENP_28431_W00004**********</th><td>-2.550193  </td><td> 0.3354151 </td><td> 7.985194  </td><td>-0.03021414</td></tr>\n",
       "\t<tr><th scope=row>ABCC3_118151_W00006</th><td> 1.276704  </td><td> 0.5269571 </td><td>14.153152  </td><td> 1.02379846</td></tr>\n",
       "\t<tr><th scope=row>INPP5A_16501_W00007</th><td>-0.302787  </td><td> 1.8147123 </td><td> 6.233111  </td><td> 3.21074432</td></tr>\n",
       "</tbody>\n",
       "</table>\n"
      ],
      "text/latex": [
       "\\begin{tabular}{r|llll}\n",
       "  & PC1 & PC2 & PC3 & PC4\\\\\n",
       "\\hline\n",
       "\tINPP5F\\_213187\\_W00002 & -2.297227   &  3.0719257  &  7.171821   &  1.85954551\\\\\n",
       "\tG6PC3\\_105918\\_W00003 & -2.837090   & -1.6041712  &  5.607867   & -0.46411312\\\\\n",
       "\tINCENP\\_28431\\_W00004********** & -2.550193   &  0.3354151  &  7.985194   & -0.03021414\\\\\n",
       "\tABCC3\\_118151\\_W00006 &  1.276704   &  0.5269571  & 14.153152   &  1.02379846\\\\\n",
       "\tINPP5A\\_16501\\_W00007 & -0.302787   &  1.8147123  &  6.233111   &  3.21074432\\\\\n",
       "\\end{tabular}\n"
      ],
      "text/markdown": [
       "\n",
       "| <!--/--> | PC1 | PC2 | PC3 | PC4 | \n",
       "|---|---|---|---|---|\n",
       "| INPP5F_213187_W00002 | -2.297227   |  3.0719257  |  7.171821   |  1.85954551 | \n",
       "| G6PC3_105918_W00003 | -2.837090   | -1.6041712  |  5.607867   | -0.46411312 | \n",
       "| INCENP_28431_W00004********** | -2.550193   |  0.3354151  |  7.985194   | -0.03021414 | \n",
       "| ABCC3_118151_W00006 |  1.276704   |  0.5269571  | 14.153152   |  1.02379846 | \n",
       "| INPP5A_16501_W00007 | -0.302787   |  1.8147123  |  6.233111   |  3.21074432 | \n",
       "\n",
       "\n"
      ],
      "text/plain": [
       "                              PC1       PC2        PC3       PC4        \n",
       "INPP5F_213187_W00002          -2.297227  3.0719257  7.171821  1.85954551\n",
       "G6PC3_105918_W00003           -2.837090 -1.6041712  5.607867 -0.46411312\n",
       "INCENP_28431_W00004********** -2.550193  0.3354151  7.985194 -0.03021414\n",
       "ABCC3_118151_W00006            1.276704  0.5269571 14.153152  1.02379846\n",
       "INPP5A_16501_W00007           -0.302787  1.8147123  6.233111  3.21074432"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "testClassFeatures[1:5,1:4]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 19,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<dl>\n",
       "\t<dt>$classification</dt>\n",
       "\t\t<dd></dd>\n",
       "\t<dt>$z</dt>\n",
       "\t\t<dd><table>\n",
       "<tbody>\n",
       "\t<tr><th scope=row>INPP5F_213187_W00002</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>G6PC3_105918_W00003</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>INCENP_28431_W00004**********</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>ABCC3_118151_W00006</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>INPP5A_16501_W00007</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>LHPP_105893_W00008</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>MTMR2_104914_W00009</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>ABCG1_118198_W00010</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>ABCG5_118181_W00011</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>ADCK1_118176_W00012</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>ABCB6_118166_W00014</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>PPP2CA_104510_W00016</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>PPP2R5E_104845_W00017</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>ABCC5_117360_W00018</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>XK_118947_W00019</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>ABCC9_117366_W00020</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>MTMR4_104749_W00021</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>RNGTT_104682_W00022</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>MTMR8_104925_W00023</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>OGDHL_109063_W00024</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>ENPP5_29405_W00025</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>SLC7A9_115995_W00027</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>ECHS1_107311_W00028</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>PPP2R2B_104997_W00029</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>LMTK2_104894_W00030</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>PPP2R5A_105855_W00031</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>ECI2_107957_W00033</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>RTN4IP1_109799_W00034</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>PFKFB1_105826_W00035</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>SSH1_104935_W00036</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>⋮</th><td>⋮</td><td>⋮</td></tr>\n",
       "\t<tr><th scope=row>ALOX12B_2305_W00354</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>CYP4F3_106315_W00355</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>CYP11B1_112623_W00356</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>AMACR_113443_W00357</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>BANK1_109020_W00358</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>SCP2D1_110435_W00359</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>SLC18A2_120102_W00360</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>SGPP1_104956_W00361</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>CYP8B1_107399_W00362</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>COPB1_24546_W00363</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>CYP7B1_107546_W00364</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>DUSP1_104722_W00365</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>DUSP13_6555_W00366</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>INPP5F_213185_W00367</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>CYP27B1_2466_W00368</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>SLC1A5_117350_W00369</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>SLC18A3_120103_W00370</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>CYP2J2_106227_W00371</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>SSH1_104936_W00373</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>SYNJ1_104703_W00374</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>TPTE2_36400_W00375</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>SLC7A7_117207_W00376</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>CYP17A1_2348_W00377</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>CYP20A1_110400_W00378</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>DUSP22_104938_W00379</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>DUSP6_105820_W00380</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>ABCB10_117449_W00381</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>SLC16A8_120130_W00382</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>ATP9A_120157_W00383</th><td>NaN</td><td>NaN</td></tr>\n",
       "\t<tr><th scope=row>ATP8B1_119994_W00384</th><td>NaN</td><td>NaN</td></tr>\n",
       "</tbody>\n",
       "</table>\n",
       "</dd>\n",
       "</dl>\n"
      ],
      "text/latex": [
       "\\begin{description}\n",
       "\\item[\\$classification] \n",
       "\\item[\\$z] \\begin{tabular}{r|ll}\n",
       "\tINPP5F\\_213187\\_W00002 & NaN & NaN\\\\\n",
       "\tG6PC3\\_105918\\_W00003 & NaN & NaN\\\\\n",
       "\tINCENP\\_28431\\_W00004********** & NaN & NaN\\\\\n",
       "\tABCC3\\_118151\\_W00006 & NaN & NaN\\\\\n",
       "\tINPP5A\\_16501\\_W00007 & NaN & NaN\\\\\n",
       "\tLHPP\\_105893\\_W00008 & NaN & NaN\\\\\n",
       "\tMTMR2\\_104914\\_W00009 & NaN & NaN\\\\\n",
       "\tABCG1\\_118198\\_W00010 & NaN & NaN\\\\\n",
       "\tABCG5\\_118181\\_W00011 & NaN & NaN\\\\\n",
       "\tADCK1\\_118176\\_W00012 & NaN & NaN\\\\\n",
       "\tABCB6\\_118166\\_W00014 & NaN & NaN\\\\\n",
       "\tPPP2CA\\_104510\\_W00016 & NaN & NaN\\\\\n",
       "\tPPP2R5E\\_104845\\_W00017 & NaN & NaN\\\\\n",
       "\tABCC5\\_117360\\_W00018 & NaN & NaN\\\\\n",
       "\tXK\\_118947\\_W00019 & NaN & NaN\\\\\n",
       "\tABCC9\\_117366\\_W00020 & NaN & NaN\\\\\n",
       "\tMTMR4\\_104749\\_W00021 & NaN & NaN\\\\\n",
       "\tRNGTT\\_104682\\_W00022 & NaN & NaN\\\\\n",
       "\tMTMR8\\_104925\\_W00023 & NaN & NaN\\\\\n",
       "\tOGDHL\\_109063\\_W00024 & NaN & NaN\\\\\n",
       "\tENPP5\\_29405\\_W00025 & NaN & NaN\\\\\n",
       "\tSLC7A9\\_115995\\_W00027 & NaN & NaN\\\\\n",
       "\tECHS1\\_107311\\_W00028 & NaN & NaN\\\\\n",
       "\tPPP2R2B\\_104997\\_W00029 & NaN & NaN\\\\\n",
       "\tLMTK2\\_104894\\_W00030 & NaN & NaN\\\\\n",
       "\tPPP2R5A\\_105855\\_W00031 & NaN & NaN\\\\\n",
       "\tECI2\\_107957\\_W00033 & NaN & NaN\\\\\n",
       "\tRTN4IP1\\_109799\\_W00034 & NaN & NaN\\\\\n",
       "\tPFKFB1\\_105826\\_W00035 & NaN & NaN\\\\\n",
       "\tSSH1\\_104935\\_W00036 & NaN & NaN\\\\\n",
       "\t⋮ & ⋮ & ⋮\\\\\n",
       "\tALOX12B\\_2305\\_W00354 & NaN & NaN\\\\\n",
       "\tCYP4F3\\_106315\\_W00355 & NaN & NaN\\\\\n",
       "\tCYP11B1\\_112623\\_W00356 & NaN & NaN\\\\\n",
       "\tAMACR\\_113443\\_W00357 & NaN & NaN\\\\\n",
       "\tBANK1\\_109020\\_W00358 & NaN & NaN\\\\\n",
       "\tSCP2D1\\_110435\\_W00359 & NaN & NaN\\\\\n",
       "\tSLC18A2\\_120102\\_W00360 & NaN & NaN\\\\\n",
       "\tSGPP1\\_104956\\_W00361 & NaN & NaN\\\\\n",
       "\tCYP8B1\\_107399\\_W00362 & NaN & NaN\\\\\n",
       "\tCOPB1\\_24546\\_W00363 & NaN & NaN\\\\\n",
       "\tCYP7B1\\_107546\\_W00364 & NaN & NaN\\\\\n",
       "\tDUSP1\\_104722\\_W00365 & NaN & NaN\\\\\n",
       "\tDUSP13\\_6555\\_W00366 & NaN & NaN\\\\\n",
       "\tINPP5F\\_213185\\_W00367 & NaN & NaN\\\\\n",
       "\tCYP27B1\\_2466\\_W00368 & NaN & NaN\\\\\n",
       "\tSLC1A5\\_117350\\_W00369 & NaN & NaN\\\\\n",
       "\tSLC18A3\\_120103\\_W00370 & NaN & NaN\\\\\n",
       "\tCYP2J2\\_106227\\_W00371 & NaN & NaN\\\\\n",
       "\tSSH1\\_104936\\_W00373 & NaN & NaN\\\\\n",
       "\tSYNJ1\\_104703\\_W00374 & NaN & NaN\\\\\n",
       "\tTPTE2\\_36400\\_W00375 & NaN & NaN\\\\\n",
       "\tSLC7A7\\_117207\\_W00376 & NaN & NaN\\\\\n",
       "\tCYP17A1\\_2348\\_W00377 & NaN & NaN\\\\\n",
       "\tCYP20A1\\_110400\\_W00378 & NaN & NaN\\\\\n",
       "\tDUSP22\\_104938\\_W00379 & NaN & NaN\\\\\n",
       "\tDUSP6\\_105820\\_W00380 & NaN & NaN\\\\\n",
       "\tABCB10\\_117449\\_W00381 & NaN & NaN\\\\\n",
       "\tSLC16A8\\_120130\\_W00382 & NaN & NaN\\\\\n",
       "\tATP9A\\_120157\\_W00383 & NaN & NaN\\\\\n",
       "\tATP8B1\\_119994\\_W00384 & NaN & NaN\\\\\n",
       "\\end{tabular}\n",
       "\n",
       "\\end{description}\n"
      ],
      "text/markdown": [
       "$classification\n",
       ":   \n",
       "$z\n",
       ":   \n",
       "| INPP5F_213187_W00002 | NaN | NaN | \n",
       "| G6PC3_105918_W00003 | NaN | NaN | \n",
       "| INCENP_28431_W00004********** | NaN | NaN | \n",
       "| ABCC3_118151_W00006 | NaN | NaN | \n",
       "| INPP5A_16501_W00007 | NaN | NaN | \n",
       "| LHPP_105893_W00008 | NaN | NaN | \n",
       "| MTMR2_104914_W00009 | NaN | NaN | \n",
       "| ABCG1_118198_W00010 | NaN | NaN | \n",
       "| ABCG5_118181_W00011 | NaN | NaN | \n",
       "| ADCK1_118176_W00012 | NaN | NaN | \n",
       "| ABCB6_118166_W00014 | NaN | NaN | \n",
       "| PPP2CA_104510_W00016 | NaN | NaN | \n",
       "| PPP2R5E_104845_W00017 | NaN | NaN | \n",
       "| ABCC5_117360_W00018 | NaN | NaN | \n",
       "| XK_118947_W00019 | NaN | NaN | \n",
       "| ABCC9_117366_W00020 | NaN | NaN | \n",
       "| MTMR4_104749_W00021 | NaN | NaN | \n",
       "| RNGTT_104682_W00022 | NaN | NaN | \n",
       "| MTMR8_104925_W00023 | NaN | NaN | \n",
       "| OGDHL_109063_W00024 | NaN | NaN | \n",
       "| ENPP5_29405_W00025 | NaN | NaN | \n",
       "| SLC7A9_115995_W00027 | NaN | NaN | \n",
       "| ECHS1_107311_W00028 | NaN | NaN | \n",
       "| PPP2R2B_104997_W00029 | NaN | NaN | \n",
       "| LMTK2_104894_W00030 | NaN | NaN | \n",
       "| PPP2R5A_105855_W00031 | NaN | NaN | \n",
       "| ECI2_107957_W00033 | NaN | NaN | \n",
       "| RTN4IP1_109799_W00034 | NaN | NaN | \n",
       "| PFKFB1_105826_W00035 | NaN | NaN | \n",
       "| SSH1_104935_W00036 | NaN | NaN | \n",
       "| ⋮ | ⋮ | ⋮ | \n",
       "| ALOX12B_2305_W00354 | NaN | NaN | \n",
       "| CYP4F3_106315_W00355 | NaN | NaN | \n",
       "| CYP11B1_112623_W00356 | NaN | NaN | \n",
       "| AMACR_113443_W00357 | NaN | NaN | \n",
       "| BANK1_109020_W00358 | NaN | NaN | \n",
       "| SCP2D1_110435_W00359 | NaN | NaN | \n",
       "| SLC18A2_120102_W00360 | NaN | NaN | \n",
       "| SGPP1_104956_W00361 | NaN | NaN | \n",
       "| CYP8B1_107399_W00362 | NaN | NaN | \n",
       "| COPB1_24546_W00363 | NaN | NaN | \n",
       "| CYP7B1_107546_W00364 | NaN | NaN | \n",
       "| DUSP1_104722_W00365 | NaN | NaN | \n",
       "| DUSP13_6555_W00366 | NaN | NaN | \n",
       "| INPP5F_213185_W00367 | NaN | NaN | \n",
       "| CYP27B1_2466_W00368 | NaN | NaN | \n",
       "| SLC1A5_117350_W00369 | NaN | NaN | \n",
       "| SLC18A3_120103_W00370 | NaN | NaN | \n",
       "| CYP2J2_106227_W00371 | NaN | NaN | \n",
       "| SSH1_104936_W00373 | NaN | NaN | \n",
       "| SYNJ1_104703_W00374 | NaN | NaN | \n",
       "| TPTE2_36400_W00375 | NaN | NaN | \n",
       "| SLC7A7_117207_W00376 | NaN | NaN | \n",
       "| CYP17A1_2348_W00377 | NaN | NaN | \n",
       "| CYP20A1_110400_W00378 | NaN | NaN | \n",
       "| DUSP22_104938_W00379 | NaN | NaN | \n",
       "| DUSP6_105820_W00380 | NaN | NaN | \n",
       "| ABCB10_117449_W00381 | NaN | NaN | \n",
       "| SLC16A8_120130_W00382 | NaN | NaN | \n",
       "| ATP9A_120157_W00383 | NaN | NaN | \n",
       "| ATP8B1_119994_W00384 | NaN | NaN | \n",
       "\n",
       "\n",
       "\n",
       "\n",
       "\n"
      ],
      "text/plain": [
       "$classification\n",
       "integer(0)\n",
       "\n",
       "$z\n",
       "                              [,1] [,2]\n",
       "INPP5F_213187_W00002           NaN  NaN\n",
       "G6PC3_105918_W00003            NaN  NaN\n",
       "INCENP_28431_W00004**********  NaN  NaN\n",
       "ABCC3_118151_W00006            NaN  NaN\n",
       "INPP5A_16501_W00007            NaN  NaN\n",
       "LHPP_105893_W00008             NaN  NaN\n",
       "MTMR2_104914_W00009            NaN  NaN\n",
       "ABCG1_118198_W00010            NaN  NaN\n",
       "ABCG5_118181_W00011            NaN  NaN\n",
       "ADCK1_118176_W00012            NaN  NaN\n",
       "ABCB6_118166_W00014            NaN  NaN\n",
       "PPP2CA_104510_W00016           NaN  NaN\n",
       "PPP2R5E_104845_W00017          NaN  NaN\n",
       "ABCC5_117360_W00018            NaN  NaN\n",
       "XK_118947_W00019               NaN  NaN\n",
       "ABCC9_117366_W00020            NaN  NaN\n",
       "MTMR4_104749_W00021            NaN  NaN\n",
       "RNGTT_104682_W00022            NaN  NaN\n",
       "MTMR8_104925_W00023            NaN  NaN\n",
       "OGDHL_109063_W00024            NaN  NaN\n",
       "ENPP5_29405_W00025             NaN  NaN\n",
       "SLC7A9_115995_W00027           NaN  NaN\n",
       "ECHS1_107311_W00028            NaN  NaN\n",
       "PPP2R2B_104997_W00029          NaN  NaN\n",
       "LMTK2_104894_W00030            NaN  NaN\n",
       "PPP2R5A_105855_W00031          NaN  NaN\n",
       "ECI2_107957_W00033             NaN  NaN\n",
       "RTN4IP1_109799_W00034          NaN  NaN\n",
       "PFKFB1_105826_W00035           NaN  NaN\n",
       "SSH1_104935_W00036             NaN  NaN\n",
       "PPP2R1A_2161_W00037            NaN  NaN\n",
       "G6PC_104440_W00038             NaN  NaN\n",
       "IMPA1_104774_W00039            NaN  NaN\n",
       "ABCC11_118186_W00040           NaN  NaN\n",
       "VAT1L_109304_W00041            NaN  NaN\n",
       "ABCF2_117367_W00042            NaN  NaN\n",
       "PPP4R1_104763_W00043           NaN  NaN\n",
       "PPP5C_105859_W00044            NaN  NaN\n",
       "PFKFB4_104735_W00045           NaN  NaN\n",
       "UBE2G1_107081_W00046           NaN  NaN\n",
       "VCL_108453_W00047              NaN  NaN\n",
       "ABCG1_118197_W00048            NaN  NaN\n",
       "INCENP_28431_W00049**********  NaN  NaN\n",
       "TPTE_2157_W00050               NaN  NaN\n",
       "PLPP1_104989_W00051            NaN  NaN\n",
       "INCENP_28431_W00052**********  NaN  NaN\n",
       "CYP1B1_105952_W00053           NaN  NaN\n",
       "SLC7A13_116557_W00054          NaN  NaN\n",
       "TPTE2_122520_W00055            NaN  NaN\n",
       "ACPP_104467_W00056             NaN  NaN\n",
       "CYP11A1_106232_W00057          NaN  NaN\n",
       "CYP4F8_2516_W00058             NaN  NaN\n",
       "ALOX5AP_44891_W00059           NaN  NaN\n",
       "SLC22A1_117136_W00060          NaN  NaN\n",
       "CYP19A1_105950_W00061          NaN  NaN\n",
       "CYP51A1_106241_W00062          NaN  NaN\n",
       "PPM1A_104943_W00064            NaN  NaN\n",
       "SLC7A5_118944_W00066           NaN  NaN\n",
       "CYP24A1_106234_W00067          NaN  NaN\n",
       "CYP26A1_106237_W00068          NaN  NaN\n",
       "CYP4F8_2341_W00069             NaN  NaN\n",
       "ABCA12_117782_W00070           NaN  NaN\n",
       "PROSER1_109611_W00071          NaN  NaN\n",
       "SLC1A7_117409_W00072           NaN  NaN\n",
       "PPM1E_104886_W00073            NaN  NaN\n",
       "SLC2A2_116828_W00075           NaN  NaN\n",
       "CYP2C9_2370_W00076             NaN  NaN\n",
       "CDC14A_105907_W00077           NaN  NaN\n",
       "DUSP10_104865_W00078           NaN  NaN\n",
       "DUSP14_105864_W00079           NaN  NaN\n",
       "WWOX_214545_W00080             NaN  NaN\n",
       "SLC22A15_117570_W00081         NaN  NaN\n",
       "SLC19A2_117431_W00082          NaN  NaN\n",
       "HSDL2_109746_W00083            NaN  NaN\n",
       "SLC7A8_115931_W00084           NaN  NaN\n",
       "PPM1L_104979_W00085            NaN  NaN\n",
       "SSH3_104931_W00086             NaN  NaN\n",
       "CYP7A1_106229_W00088           NaN  NaN\n",
       "CYP8B1_107400_W00090           NaN  NaN\n",
       "DUSP19_104970_W00091           NaN  NaN\n",
       "DUSP23_105880_W00092           NaN  NaN\n",
       "ABCA9_117717_W00093            NaN  NaN\n",
       "SLC22A13_117242_W00094         NaN  NaN\n",
       "ATP8A1_117384_W00095           NaN  NaN\n",
       "ANK2_106391_W00096             NaN  NaN\n",
       "PPP1R8_104975_W00097           NaN  NaN\n",
       "MTMR7_213211_W00098            NaN  NaN\n",
       "PPM1B_105827_W00099            NaN  NaN\n",
       "CDYL2_110148_W00100            NaN  NaN\n",
       "ABCC2_118135_W00101            NaN  NaN\n",
       "ABCC4_117378_W00102            NaN  NaN\n",
       "PPP2R5A_105856_W00103          NaN  NaN\n",
       "PPP2R5D_104837_W00104          NaN  NaN\n",
       "PPP6C_104527_W00105            NaN  NaN\n",
       "ME3_108082_W00106              NaN  NaN\n",
       "ABCG8_118183_W00107            NaN  NaN\n",
       "OFD1_107188_W00108             NaN  NaN\n",
       "DCXR_113520_W00109             NaN  NaN\n",
       "DECR1_106432_W00110            NaN  NaN\n",
       "DUT_104493_W00111              NaN  NaN\n",
       "ENPP3_104757_W00112            NaN  NaN\n",
       "PPP2R1B_105001_W00113          NaN  NaN\n",
       "SLC25A2_116433_W00114          NaN  NaN\n",
       "ABCC6_118143_W00115            NaN  NaN\n",
       "HAO1_108958_W00116             NaN  NaN\n",
       "PSPH_15074_W00117              NaN  NaN\n",
       "MTMR6_104743_W00118            NaN  NaN\n",
       "OCRL_104450_W00119             NaN  NaN\n",
       "EPM2A_104789_W00121            NaN  NaN\n",
       "ABCB8_118172_W00122            NaN  NaN\n",
       "ABCB9_117833_W00123            NaN  NaN\n",
       "ABCC1_118158_W00124            NaN  NaN\n",
       "PPP3CB_104946_W00125           NaN  NaN\n",
       "PPP2R3A_104525_W00126          NaN  NaN\n",
       "PPP3R2_104982_W00127           NaN  NaN\n",
       "ABCD2_118162_W00128            NaN  NaN\n",
       "PECR_109110_W00129             NaN  NaN\n",
       "SERPINA4_107987_W00130         NaN  NaN\n",
       "PPP3R2_104983_W00131           NaN  NaN\n",
       "PFKFB2_104811_W00132           NaN  NaN\n",
       "PPP2R1B_105002_W00133          NaN  NaN\n",
       "G6PC2_105889_W00134            NaN  NaN\n",
       "IMPA2_104871_W00135            NaN  NaN\n",
       "ABCC12_118188_W00136           NaN  NaN\n",
       "ABCD4_118161_W00137            NaN  NaN\n",
       "ABCF3_117564_W00138            NaN  NaN\n",
       "PPP4R2_45870_W00139            NaN  NaN\n",
       "STYXL1_104908_W00140           NaN  NaN\n",
       "SSH3_104930_W00141             NaN  NaN\n",
       "CYP3A4_43605_W00142            NaN  NaN\n",
       "ZADH2_113948_W00143            NaN  NaN\n",
       "CYP51A1_106243_W00144          NaN  NaN\n",
       "INPP5J_104878_W00145           NaN  NaN\n",
       "PPP6C_104531_W00146            NaN  NaN\n",
       "CYP26B1_109197_W00148          NaN  NaN\n",
       "SLC7A2_115322_W00149           NaN  NaN\n",
       "ABCB7_118154_W00150            NaN  NaN\n",
       "ACP1_105845_W00151             NaN  NaN\n",
       "ACPT_35097_W00152              NaN  NaN\n",
       "CYP21A2_106128_W00153          NaN  NaN\n",
       "SLC7A10_118945_W00154          NaN  NaN\n",
       "SLC15A1_119985_W00155          NaN  NaN\n",
       "SLC1A3_117230_W00156           NaN  NaN\n",
       "CYP19A1_105951_W00157          NaN  NaN\n",
       "ABCF3_117565_W00158            NaN  NaN\n",
       "PLPP2_104992_W00159            NaN  NaN\n",
       "PTEN_122504_W00160             NaN  NaN\n",
       "ALPP_10044_W00161              NaN  NaN\n",
       "CYP2A7_44772_W00163            NaN  NaN\n",
       "ABCA9_117715_W00164            NaN  NaN\n",
       "CYP4X1_110412_W00165           NaN  NaN\n",
       "ABCA13_117773_W00166           NaN  NaN\n",
       "ABCA4_118133_W00167            NaN  NaN\n",
       "SLC20A2_120010_W00168          NaN  NaN\n",
       "RNGTT_104685_W00169            NaN  NaN\n",
       "CYP2C8_106224_W00170           NaN  NaN\n",
       "CYP11B2_2444_W00171            NaN  NaN\n",
       "CYP21A2_106126_W00172          NaN  NaN\n",
       "CDC14B_35174_W00173            NaN  NaN\n",
       "DUSP11_104665_W00174           NaN  NaN\n",
       "DUSP15_105914_W00175           NaN  NaN\n",
       "CYP2J2_106226_W00176           NaN  NaN\n",
       "SLC22A16_117702_W00177         NaN  NaN\n",
       "CBR4_109804_W00179             NaN  NaN\n",
       "ABCA8_118171_W00180            NaN  NaN\n",
       "STYX_104981_W00182             NaN  NaN\n",
       "PPP1R1B_6374_W00183            NaN  NaN\n",
       "SLC7A11_116004_W00184          NaN  NaN\n",
       "POR_9337_W00185                NaN  NaN\n",
       "CYP27A1_8915_W00186            NaN  NaN\n",
       "DUSP2_5082_W00187              NaN  NaN\n",
       "DUSP3_104715_W00188            NaN  NaN\n",
       "CDYL_107549_W00189             NaN  NaN\n",
       "SLC22A12_117748_W00190         NaN  NaN\n",
       "ATP8B2_117613_W00192           NaN  NaN\n",
       "PPP4C_4441_W00194              NaN  NaN\n",
       "PPM1B_122528_W00195            NaN  NaN\n",
       "CRYZ_106607_W00196             NaN  NaN\n",
       "KDSR_106666_W00197             NaN  NaN\n",
       "GMPR_113350_W00198             NaN  NaN\n",
       "INPPL1_104490_W00199           NaN  NaN\n",
       "PPP2CB_104717_W00200           NaN  NaN\n",
       "PPP2R5D_104839_W00201          NaN  NaN\n",
       "ALDH16A1_110271_W00202         NaN  NaN\n",
       "DHRS11_109534_W00203           NaN  NaN\n",
       "RAD50_117373_W00204            NaN  NaN\n",
       "ABCB5_117803_W00205            NaN  NaN\n",
       "ENPP1_104797_W00207            NaN  NaN\n",
       "PPP2CB_5044_W00208             NaN  NaN\n",
       "PPP2R2A_105831_W00209          NaN  NaN\n",
       "CYP11B2_2258_W00210            NaN  NaN\n",
       "GPD1L_108679_W00211            NaN  NaN\n",
       "HAO2_108886_W00212             NaN  NaN\n",
       "PPP3CA_104459_W00213           NaN  NaN\n",
       "PPP3CC_104782_W00214           NaN  NaN\n",
       "INPP5K_104922_W00215           NaN  NaN\n",
       "PAM_106323_W00216              NaN  NaN\n",
       "FBP1_8709_W00217               NaN  NaN\n",
       "DHRS7B_108739_W00218           NaN  NaN\n",
       "FANCA_105965_W00220            NaN  NaN\n",
       "PPP2R2C_104939_W00221          NaN  NaN\n",
       "PPP2R4_104994_W00222           NaN  NaN\n",
       "PLPPR2_104949_W00223           NaN  NaN\n",
       "ABCD3_118145_W00224            NaN  NaN\n",
       "QDPR_112596_W00225             NaN  NaN\n",
       "SPR_106984_W00226              NaN  NaN\n",
       "PPP4C_105835_W00227            NaN  NaN\n",
       "PPP4R2_41379_W00228            NaN  NaN\n",
       "PPP2R2A_104516_W00229          NaN  NaN\n",
       "PPP2R2C_104940_W00231          NaN  NaN\n",
       "ECHDC2_113566_W00232           NaN  NaN\n",
       "ME1_106787_W00234              NaN  NaN\n",
       "PPP2R5B_104834_W00235          NaN  NaN\n",
       "MTM1_104442_W00236             NaN  NaN\n",
       "PHOSPHO1_105924_W00237         NaN  NaN\n",
       "VAT1_113309_W00238             NaN  NaN\n",
       "CYP3A43_109498_W00239          NaN  NaN\n",
       "SYNJ1_104702_W00241            NaN  NaN\n",
       "PPA1_105887_W00242             NaN  NaN\n",
       "PSPH_105851_W00243             NaN  NaN\n",
       "CYP2D6_4097_W00244             NaN  NaN\n",
       "CYP4X1_110411_W00246           NaN  NaN\n",
       "ACP5_10211_W00247              NaN  NaN\n",
       "ACYP2_43735_W00248             NaN  NaN\n",
       "SLC7A4_115483_W00249           NaN  NaN\n",
       "CYP1A2_2364_W00250             NaN  NaN\n",
       "SLC15A2_117627_W00251          NaN  NaN\n",
       "SLC1A4_117114_W00252           NaN  NaN\n",
       "CYP1A1_106124_W00253           NaN  NaN\n",
       "CYP1A1_106125_W00254           NaN  NaN\n",
       "PPEF1_104828_W00255            NaN  NaN\n",
       "PPM1D_104669_W00256            NaN  NaN\n",
       "ALPPL2_46389_W00257            NaN  NaN\n",
       "CYP11A1_9008_W00258            NaN  NaN\n",
       "CYP2B6_2367_W00259             NaN  NaN\n",
       "ABCB6_117364_W00260            NaN  NaN\n",
       "CYP4Z1_110416_W00261           NaN  NaN\n",
       "AUH_112790_W00262              NaN  NaN\n",
       "ABCA5_117577_W00263            NaN  NaN\n",
       "SLC18A1_119959_W00264          NaN  NaN\n",
       "PPM1F_104879_W00265            NaN  NaN\n",
       "CYP2F1_4024_W00266             NaN  NaN\n",
       "CYP1A2_106222_W00267           NaN  NaN\n",
       "TBXAS1_2301_W00268             NaN  NaN\n",
       "CTDP1_5492_W00269              NaN  NaN\n",
       "DUSP12_105865_W00270           NaN  NaN\n",
       "DUSP18_38928_W00271            NaN  NaN\n",
       "CYP26A1_106236_W00272          NaN  NaN\n",
       "SLC17A1_117305_W00273          NaN  NaN\n",
       "SLC17A8_117742_W00274          NaN  NaN\n",
       "ABCA7_117591_W00275            NaN  NaN\n",
       "PPP1CA_41691_W00277            NaN  NaN\n",
       "PPP1CB_104504_W00278           NaN  NaN\n",
       "TPTE_2244_W00279               NaN  NaN\n",
       "ALOX15_2486_W00280             NaN  NaN\n",
       "CYP7B1_107548_W00281           NaN  NaN\n",
       "CYP2E1_3927_W00282             NaN  NaN\n",
       "DUSP21_104947_W00283           NaN  NaN\n",
       "DUSP4_104476_W00284            NaN  NaN\n",
       "ABCB1_118139_W00285            NaN  NaN\n",
       "SLC22A14_117277_W00286         NaN  NaN\n",
       "ATP8B3_120072_W00287           NaN  NaN\n",
       "TSPO_120088_W00288             NaN  NaN\n",
       "INPP5E_28158_W00289            NaN  NaN\n",
       "KIF11_14851_W00290**********   NaN  NaN\n",
       "CANT1_104977_W00291            NaN  NaN\n",
       "ABCB4_109171_W00292            NaN  NaN\n",
       "GMIP_108902_W00293             NaN  NaN\n",
       "GMPR2_108904_W00294            NaN  NaN\n",
       "ITPA_104960_W00295             NaN  NaN\n",
       "PPP2R1A_2069_W00296            NaN  NaN\n",
       "PPP2R5E_104843_W00297          NaN  NaN\n",
       "ABCG4_118179_W00298            NaN  NaN\n",
       "GLYR1_109777_W00299            NaN  NaN\n",
       "TAP1_116872_W00300             NaN  NaN\n",
       "KIF11_14851_W00301**********   NaN  NaN\n",
       "ABCB7_117249_W00302            NaN  NaN\n",
       "ENPP2_104803_W00303            NaN  NaN\n",
       "PPP3CA_104457_W00305           NaN  NaN\n",
       "CYP2S1_6265_W00306             NaN  NaN\n",
       "GRHPR_108297_W00307            NaN  NaN\n",
       "ABCD1_118129_W00308            NaN  NaN\n",
       "PPP3CB_104944_W00309           NaN  NaN\n",
       "CYP39A1_108905_W00312          NaN  NaN\n",
       "FBP2_104694_W00313             NaN  NaN\n",
       "CYP2R1_30968_W00314            NaN  NaN\n",
       "FASN_107317_W00316             NaN  NaN\n",
       "PPP3CC_104784_W00317           NaN  NaN\n",
       "PPP3R1_104466_W00318           NaN  NaN\n",
       "DUSP26_105899_W00319           NaN  NaN\n",
       "ITGB3_106001_W00320            NaN  NaN\n",
       "HSD17B6_107223_W00321          NaN  NaN\n",
       "TP53I3_107569_W00322           NaN  NaN\n",
       "PPP4R1_104761_W00323           NaN  NaN\n",
       "PFKFB3_104731_W00324           NaN  NaN\n",
       "PPP2R2B_104998_W00325          NaN  NaN\n",
       "ILKAP_1592_W00326              NaN  NaN\n",
       "INPP4B_104700_W00327           NaN  NaN\n",
       "ACAD11_113765_W00328           NaN  NaN\n",
       "ME2_106789_W00330              NaN  NaN\n",
       "PPP2R5C_105833_W00331          NaN  NaN\n",
       "MTMR1_104689_W00332            NaN  NaN\n",
       "STYX_6884_W00333               NaN  NaN\n",
       "VAV3_107956_W00334             NaN  NaN\n",
       "SLC7A4_115484_W00335           NaN  NaN\n",
       "CYP3A5_2460_W00336             NaN  NaN\n",
       "SYNJ2_104706_W00337            NaN  NaN\n",
       "KIF11_14851_W00338**********   NaN  NaN\n",
       "PLPP3_104679_W00339            NaN  NaN\n",
       "CYP26B1_109198_W00340          NaN  NaN\n",
       "CYP2C18_2459_W00341            NaN  NaN\n",
       "CYP11B1_122451_W00342          NaN  NaN\n",
       "ACP6_104918_W00343             NaN  NaN\n",
       "ALPI_10133_W00344              NaN  NaN\n",
       "CYP4F3_106313_W00345           NaN  NaN\n",
       "SLC2A3_18786_W00346            NaN  NaN\n",
       "SLC14A2_120015_W00347          NaN  NaN\n",
       "SLC1A6_117301_W00348           NaN  NaN\n",
       "KIF11_14851_W00349**********   NaN  NaN\n",
       "CYP2A6_2365_W00350             NaN  NaN\n",
       "PPEF2_104821_W00351            NaN  NaN\n",
       "CANT1_105920_W00353            NaN  NaN\n",
       "ALOX12B_2305_W00354            NaN  NaN\n",
       "CYP4F3_106315_W00355           NaN  NaN\n",
       "CYP11B1_112623_W00356          NaN  NaN\n",
       "AMACR_113443_W00357            NaN  NaN\n",
       "BANK1_109020_W00358            NaN  NaN\n",
       "SCP2D1_110435_W00359           NaN  NaN\n",
       "SLC18A2_120102_W00360          NaN  NaN\n",
       "SGPP1_104956_W00361            NaN  NaN\n",
       "CYP8B1_107399_W00362           NaN  NaN\n",
       "COPB1_24546_W00363             NaN  NaN\n",
       "CYP7B1_107546_W00364           NaN  NaN\n",
       "DUSP1_104722_W00365            NaN  NaN\n",
       "DUSP13_6555_W00366             NaN  NaN\n",
       "INPP5F_213185_W00367           NaN  NaN\n",
       "CYP27B1_2466_W00368            NaN  NaN\n",
       "SLC1A5_117350_W00369           NaN  NaN\n",
       "SLC18A3_120103_W00370          NaN  NaN\n",
       "CYP2J2_106227_W00371           NaN  NaN\n",
       "SSH1_104936_W00373             NaN  NaN\n",
       "SYNJ1_104703_W00374            NaN  NaN\n",
       "TPTE2_36400_W00375             NaN  NaN\n",
       "SLC7A7_117207_W00376           NaN  NaN\n",
       "CYP17A1_2348_W00377            NaN  NaN\n",
       "CYP20A1_110400_W00378          NaN  NaN\n",
       "DUSP22_104938_W00379           NaN  NaN\n",
       "DUSP6_105820_W00380            NaN  NaN\n",
       "ABCB10_117449_W00381           NaN  NaN\n",
       "SLC16A8_120130_W00382          NaN  NaN\n",
       "ATP9A_120157_W00383            NaN  NaN\n",
       "ATP8B1_119994_W00384           NaN  NaN\n",
       "attr(,\"logarithm\")\n",
       "[1] FALSE\n",
       "attr(,\"modelName\")\n",
       "[1] \"EVE\"\n",
       "attr(,\"returnCode\")\n",
       "[1] 0\n"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "(pred_testImages <- predict.Mclust(cc_gmm, testClassFeatures))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 20,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [],
      "text/latex": [],
      "text/markdown": [],
      "text/plain": [
       "integer(0)"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "pred_testImages$classification"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 21,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "[1] ‘5.1’"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "packageVersion(\"mclust\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 27,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "also installing the dependencies ‘viridisLite’, ‘htmlwidgets’, ‘hexbin’, ‘gridExtra’\n",
      "\n",
      "Updating HTML index of packages in '.Library'\n",
      "Making 'packages.html' ... done\n"
     ]
    }
   ],
   "source": [
    "install.packages(c(\"plotly\", \"viridis\", \"ggplot2\"))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 28,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "\n",
      "\n",
      "processing file: pipeline.Rmd\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "\r",
      "  |                                                                       \r",
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      "  |                                                                       \r",
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      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.                                                                |   2%\n",
      "label: unnamed-chunk-1 (with options) \n",
      "List of 2\n",
      " $ echo   : symbol F\n",
      " $ warning: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |..                                                               |   3%\n",
      "   inline R code fragments\n",
      "\n",
      "\r",
      "  |                                                                       \r",
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      "label: unnamed-chunk-2 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
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      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |....                                                             |   6%\n",
      "label: unnamed-chunk-3 (with options) \n",
      "List of 3\n",
      " $ echo   : symbol F\n",
      " $ message: symbol F\n",
      " $ warning: symbol F\n",
      "\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "\n",
      "Attaching package: 'plotly'\n",
      "\n",
      "The following object is masked from 'package:ggplot2':\n",
      "\n",
      "    last_plot\n",
      "\n",
      "The following object is masked from 'package:stats':\n",
      "\n",
      "    filter\n",
      "\n",
      "The following object is masked from 'package:graphics':\n",
      "\n",
      "    layout\n",
      "\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "\r",
      "  |                                                                       \r",
      "  |.....                                                            |   7%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.....                                                            |   8%\n",
      "label: unnamed-chunk-4 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |......                                                           |   9%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.......                                                          |  10%\n",
      "label: unnamed-chunk-5 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
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      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
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      "label: unnamed-chunk-6 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.........                                                        |  14%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.........                                                        |  15%\n",
      "label: unnamed-chunk-7 (with options) \n",
      "List of 2\n",
      " $ message: symbol F\n",
      " $ echo   : symbol F\n",
      "\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Loading required package: dplyr\n",
      "\n",
      "Attaching package: 'dplyr'\n",
      "\n",
      "The following objects are masked from 'package:stats':\n",
      "\n",
      "    filter, lag\n",
      "\n",
      "The following objects are masked from 'package:base':\n",
      "\n",
      "    intersect, setdiff, setequal, union\n",
      "\n",
      "Joining, by = c(\"Well\", \"Plate\", \"rep\", \"specificCMPO\", \"specificName\", \"siRNA\", \"EnsemblID\", \"symbol\", \"CMPO term(s)\", \"CMPO ID(s)\", \"IC\", \"tag\", \"class\", \"Edge Features () [0]\", \"Edge Features () [1]\", \"Edge Features () [2]\", \"Edge Features () [3]\", \"Edge Features () [4]\", \"Edge Features () [5]\", \"Edge Features () [6]\", \"Edge Features () [7]\", \"Edge Features () [8]\", \"Edge Features () [9]\", \"Edge Features () [10]\", \"Edge Features () [11]\", \"Edge Features () [12]\", \"Edge Features () [13]\", \"Edge Features () [14]\", \"Edge Features () [15]\", \"Edge Features () [16]\", \"Edge Features () [17]\", \"Edge Features () [18]\", \"Edge Features () [19]\", \"Edge Features () [20]\", \"Edge Features () [21]\", \"Edge Features () [22]\", \"Edge Features () [23]\", \"Edge Features () [24]\", \"Edge Features () [25]\", \"Edge Features () [26]\", \"Edge Features () [27]\", \"Otsu Object Features () [0]\", \"Otsu Object Features () [1]\", \"Otsu Object Features () [2]\", \"Otsu Object Features () [3]\", \"Otsu Object Features () [4]\", \"Otsu Object Features () [5]\", \"Otsu Object Features () [6]\", \"Otsu Object Features () [7]\", \"Otsu Object Features () [8]\", \"Otsu Object Features () [9]\", \"Otsu Object Features () [10]\", \"Otsu Object Features () [11]\", \"Otsu Object Features () [12]\", \"Otsu Object Features () [13]\", \"Otsu Object Features () [14]\", \"Otsu Object Features () [15]\", \"Otsu Object Features () [16]\", \"Otsu Object Features () [17]\", \"Otsu Object Features () [18]\", \"Otsu Object Features () [19]\", \"Otsu Object Features () [20]\", \"Otsu Object Features () [21]\", \"Otsu Object Features () [22]\", \"Otsu Object Features () [23]\", \"Otsu Object Features () [24]\", \"Otsu Object Features () [25]\", \"Otsu Object Features () [26]\", \"Otsu Object Features () [27]\", \"Otsu Object Features () [28]\", \"Otsu Object Features () [29]\", \"Otsu Object Features () [30]\", \"Otsu Object Features () [31]\", \"Otsu Object Features () [32]\", \"Otsu Object Features () [33]\", \"Inverse-Otsu Object Features () [0]\", \"Inverse-Otsu Object Features () [1]\", \"Inverse-Otsu Object Features () [2]\", \"Inverse-Otsu Object Features () [3]\", \"Inverse-Otsu Object Features () [4]\", \"Inverse-Otsu Object Features () [5]\", \"Inverse-Otsu Object Features () [6]\", \"Inverse-Otsu Object Features () [7]\", \"Inverse-Otsu Object Features () [8]\", \"Inverse-Otsu Object Features () [9]\", \"Inverse-Otsu Object Features () [10]\", \"Inverse-Otsu Object Features () [11]\", \"Inverse-Otsu Object Features () [12]\", \"Inverse-Otsu Object Features () [13]\", \"Inverse-Otsu Object Features () [14]\", \"Inverse-Otsu Object Features () [15]\", \"Inverse-Otsu Object Features () [16]\", \"Inverse-Otsu Object Features () [17]\", \"Inverse-Otsu Object Features () [18]\", \"Inverse-Otsu Object Features () [19]\", \"Inverse-Otsu Object Features () [20]\", \"Inverse-Otsu Object Features () [21]\", \"Inverse-Otsu Object Features () [22]\", \"Inverse-Otsu Object Features () [23]\", \"Inverse-Otsu Object Features () [24]\", \"Inverse-Otsu Object Features () [25]\", \"Inverse-Otsu Object Features () [26]\", \"Inverse-Otsu Object Features () [27]\", \"Inverse-Otsu Object Features () [28]\", \"Inverse-Otsu Object Features () [29]\", \"Inverse-Otsu Object Features () [30]\", \"Inverse-Otsu Object Features () [31]\", \"Inverse-Otsu Object Features () [32]\", \"Inverse-Otsu Object Features () [33]\", \"Gabor Textures () [0]\", \"Gabor Textures () [1]\", \"Gabor Textures () [2]\", \"Gabor Textures () [3]\", \"Gabor Textures () [4]\", \"Gabor Textures () [5]\", \"Gabor Textures () [6]\", \"Chebyshev-Fourier Coefficients () [0]\", \"Chebyshev-Fourier Coefficients () [1]\", \"Chebyshev-Fourier Coefficients () [2]\", \"Chebyshev-Fourier Coefficients () [3]\", \"Chebyshev-Fourier Coefficients () [4]\", \"Chebyshev-Fourier Coefficients () [5]\", \"Chebyshev-Fourier Coefficients () [6]\", \"Chebyshev-Fourier Coefficients () [7]\", \"Chebyshev-Fourier Coefficients () [8]\", \"Chebyshev-Fourier Coefficients () [9]\", \"Chebyshev-Fourier Coefficients () [10]\", \"Chebyshev-Fourier Coefficients () [11]\", \"Chebyshev-Fourier Coefficients () [12]\", \"Chebyshev-Fourier Coefficients () [13]\", \"Chebyshev-Fourier Coefficients () [14]\", \"Chebyshev-Fourier Coefficients () [15]\", \"Chebyshev-Fourier Coefficients () [16]\", \"Chebyshev-Fourier Coefficients () [17]\", \"Chebyshev-Fourier Coefficients () [18]\", \"Chebyshev-Fourier Coefficients () [19]\", \"Chebyshev-Fourier Coefficients () [20]\", \"Chebyshev-Fourier Coefficients () [21]\", \"Chebyshev-Fourier Coefficients () [22]\", \"Chebyshev-Fourier Coefficients () [23]\", \"Chebyshev-Fourier Coefficients () [24]\", \"Chebyshev-Fourier Coefficients () [25]\", \"Chebyshev-Fourier Coefficients () [26]\", \"Chebyshev-Fourier Coefficients () [27]\", \"Chebyshev-Fourier Coefficients () [28]\", \"Chebyshev-Fourier Coefficients () [29]\", \"Chebyshev-Fourier Coefficients () [30]\", \"Chebyshev-Fourier Coefficients () [31]\", \"Chebyshev Coefficients () [0]\", \"Chebyshev Coefficients () [1]\", \"Chebyshev Coefficients () [2]\", \"Chebyshev Coefficients () [3]\", \"Chebyshev Coefficients () [4]\", \"Chebyshev Coefficients () [5]\", \"Chebyshev Coefficients () [6]\", \"Chebyshev Coefficients () [7]\", \"Chebyshev Coefficients () [8]\", \"Chebyshev Coefficients () [9]\", \"Chebyshev Coefficients () [10]\", \"Chebyshev Coefficients () [11]\", \"Chebyshev Coefficients () [12]\", \"Chebyshev Coefficients () [13]\", \"Chebyshev Coefficients () [14]\", \"Chebyshev Coefficients () [15]\", \"Chebyshev Coefficients () [16]\", \"Chebyshev Coefficients () [17]\", \"Chebyshev Coefficients () [18]\", \"Chebyshev Coefficients () [19]\", \"Chebyshev Coefficients () [20]\", \"Chebyshev Coefficients () [21]\", \"Chebyshev Coefficients () [22]\", \"Chebyshev Coefficients () [23]\", \"Chebyshev Coefficients () [24]\", \"Chebyshev Coefficients () [25]\", \"Chebyshev Coefficients () [26]\", \"Chebyshev Coefficients () [27]\", \"Chebyshev Coefficients () [28]\", \"Chebyshev Coefficients () [29]\", \"Chebyshev Coefficients () [30]\", \"Chebyshev Coefficients () [31]\", \"Zernike Coefficients () [0]\", \"Zernike Coefficients () [1]\", \"Zernike Coefficients () [2]\", \"Zernike Coefficients () [3]\", \"Zernike Coefficients () [4]\", \"Zernike Coefficients () [5]\", \"Zernike Coefficients () [6]\", \"Zernike Coefficients () [7]\", \"Zernike Coefficients () [8]\", \"Zernike Coefficients () [9]\", \"Zernike Coefficients () [10]\", \"Zernike Coefficients () [11]\", \"Zernike Coefficients () [12]\", \"Zernike Coefficients () [13]\", \"Zernike Coefficients () [14]\", \"Zernike Coefficients () [15]\", \"Zernike Coefficients () [16]\", \"Zernike Coefficients () [17]\", \"Zernike Coefficients () [18]\", \"Zernike Coefficients () [19]\", \"Zernike Coefficients () [20]\", \"Zernike Coefficients () [21]\", \"Zernike Coefficients () [22]\", \"Zernike Coefficients () [23]\", \"Zernike Coefficients () [24]\", \"Zernike Coefficients () [25]\", \"Zernike Coefficients () [26]\", \"Zernike Coefficients () [27]\", \"Zernike Coefficients () [28]\", \"Zernike Coefficients () [29]\", \"Zernike Coefficients () [30]\", \"Zernike Coefficients () [31]\", \"Zernike Coefficients () [32]\", \"Zernike Coefficients () [33]\", \"Zernike Coefficients () [34]\", \"Zernike Coefficients () [35]\", \"Zernike Coefficients () [36]\", \"Zernike Coefficients () [37]\", \"Zernike Coefficients () [38]\", \"Zernike Coefficients () [39]\", \"Zernike Coefficients () [40]\", \"Zernike Coefficients () [41]\", \"Zernike Coefficients () [42]\", \"Zernike Coefficients () [43]\", \"Zernike Coefficients () [44]\", \"Zernike Coefficients () [45]\", \"Zernike Coefficients () [46]\", \"Zernike Coefficients () [47]\", \"Zernike Coefficients () [48]\", \"Zernike Coefficients () [49]\", \"Zernike Coefficients () [50]\", \"Zernike Coefficients () [51]\", \"Zernike Coefficients () [52]\", \"Zernike Coefficients () [53]\", \"Zernike Coefficients () [54]\", \"Zernike Coefficients () [55]\", \"Zernike Coefficients () [56]\", \"Zernike Coefficients () [57]\", \"Zernike Coefficients () [58]\", \"Zernike Coefficients () [59]\", \"Zernike Coefficients () [60]\", \"Zernike Coefficients () [61]\", \"Zernike Coefficients () [62]\", \"Zernike Coefficients () [63]\", \"Zernike Coefficients () [64]\", \"Zernike Coefficients () [65]\", \"Zernike Coefficients () [66]\", \"Zernike Coefficients () [67]\", \"Zernike Coefficients () [68]\", \"Zernike Coefficients () [69]\", \"Zernike Coefficients () [70]\", \"Zernike Coefficients () [71]\", \"Comb Moments () [0]\", \"Comb Moments () [1]\", \"Comb Moments () [2]\", \"Comb Moments () [3]\", \"Comb Moments () [4]\", \"Comb Moments () [5]\", \"Comb Moments () [6]\", \"Comb Moments () [7]\", \"Comb Moments () [8]\", \"Comb Moments () [9]\", \"Comb Moments () [10]\", \"Comb Moments () [11]\", \"Comb Moments () [12]\", \"Comb Moments () [13]\", \"Comb Moments () [14]\", \"Comb Moments () [15]\", \"Comb Moments () [16]\", \"Comb Moments () [17]\", \"Comb Moments () [18]\", \"Comb Moments () [19]\", \"Comb Moments () [20]\", \"Comb Moments () [21]\", \"Comb Moments () [22]\", \"Comb Moments () [23]\", \"Comb Moments () [24]\", \"Comb Moments () [25]\", \"Comb Moments () [26]\", \"Comb Moments () [27]\", \"Comb Moments () [28]\", \"Comb Moments () [29]\", \"Comb Moments () [30]\", \"Comb Moments () [31]\", \"Comb Moments () [32]\", \"Comb Moments () [33]\", \"Comb Moments () [34]\", \"Comb Moments () [35]\", \"Comb Moments () [36]\", \"Comb Moments () [37]\", \"Comb Moments () [38]\", \"Comb Moments () [39]\", \"Comb Moments () [40]\", \"Comb Moments () [41]\", \"Comb Moments () [42]\", \"Comb Moments () [43]\", \"Comb Moments () [44]\", \"Comb Moments () [45]\", \"Comb Moments () [46]\", \"Comb Moments () [47]\", \"Haralick Textures () [0]\", \"Haralick Textures () [1]\", \"Haralick Textures () [2]\", \"Haralick Textures () [3]\", \"Haralick Textures () [4]\", \"Haralick Textures () [5]\", \"Haralick Textures () [6]\", \"Haralick Textures () [7]\", \"Haralick Textures () [8]\", \"Haralick Textures () [9]\", \"Haralick Textures () [10]\", \"Haralick Textures () [11]\", \"Haralick Textures () [12]\", \"Haralick Textures () [13]\", \"Haralick Textures () [14]\", \"Haralick Textures () [15]\", \"Haralick Textures () [16]\", \"Haralick Textures () [17]\", \"Haralick Textures () [18]\", \"Haralick Textures () [19]\", \"Haralick Textures () [20]\", \"Haralick Textures () [21]\", \"Haralick Textures () [22]\", \"Haralick Textures () [23]\", \"Haralick Textures () [24]\", \"Haralick Textures () [25]\", \"Haralick Textures () [26]\", \"Haralick Textures () [27]\", \"Multiscale Histograms () [0]\", \"Multiscale Histograms () [1]\", \"Multiscale Histograms () [2]\", \"Multiscale Histograms () [3]\", \"Multiscale Histograms () [4]\", \"Multiscale Histograms () [5]\", \"Multiscale 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(Edge ())) [20]\", \"Haralick Textures (Fourier (Edge ())) [21]\", \"Haralick Textures (Fourier (Edge ())) [22]\", \"Haralick Textures (Fourier (Edge ())) [23]\", \"Haralick Textures (Fourier (Edge ())) [24]\", \"Haralick Textures (Fourier (Edge ())) [25]\", \"Haralick Textures (Fourier (Edge ())) [26]\", \"Haralick Textures (Fourier (Edge ())) [27]\", \"Multiscale Histograms (Fourier (Edge ())) [0]\", \"Multiscale Histograms (Fourier (Edge ())) [1]\", \"Multiscale Histograms (Fourier (Edge ())) [2]\", \"Multiscale Histograms (Fourier (Edge ())) [3]\", \"Multiscale Histograms (Fourier (Edge ())) [4]\", \"Multiscale Histograms (Fourier (Edge ())) [5]\", \"Multiscale Histograms (Fourier (Edge ())) [6]\", \"Multiscale Histograms (Fourier (Edge ())) [7]\", \"Multiscale Histograms (Fourier (Edge ())) [8]\", \"Multiscale Histograms (Fourier (Edge ())) [9]\", \"Multiscale Histograms (Fourier (Edge ())) [10]\", \"Multiscale Histograms (Fourier (Edge ())) [11]\", \"Multiscale Histograms (Fourier (Edge ())) [12]\", \"Multiscale Histograms (Fourier (Edge ())) [13]\", \"Multiscale Histograms (Fourier (Edge ())) [14]\", \"Multiscale Histograms (Fourier (Edge ())) [15]\", \"Multiscale Histograms (Fourier (Edge ())) [16]\", \"Multiscale Histograms (Fourier (Edge ())) [17]\", \"Multiscale Histograms (Fourier (Edge ())) [18]\", \"Multiscale Histograms (Fourier (Edge ())) [19]\", \"Multiscale Histograms (Fourier (Edge ())) [20]\", \"Multiscale Histograms (Fourier (Edge ())) [21]\", \"Multiscale Histograms (Fourier (Edge ())) [22]\", \"Multiscale Histograms (Fourier (Edge ())) [23]\", \"Tamura Textures (Fourier (Edge ())) [0]\", \"Tamura Textures (Fourier (Edge ())) [1]\", \"Tamura Textures (Fourier (Edge ())) [2]\", \"Tamura Textures (Fourier (Edge ())) [3]\", \"Tamura Textures (Fourier (Edge ())) [4]\", \"Tamura Textures (Fourier (Edge ())) [5]\", \"Radon Coefficients (Fourier (Edge ())) [0]\", \"Radon Coefficients (Fourier (Edge ())) [1]\", \"Radon Coefficients (Fourier (Edge ())) [2]\", \"Radon Coefficients (Fourier (Edge ())) [3]\", \"Radon Coefficients (Fourier (Edge ())) [4]\", \"Radon Coefficients (Fourier (Edge ())) [5]\", \"Radon Coefficients (Fourier (Edge ())) [6]\", \"Radon Coefficients (Fourier (Edge ())) [7]\", \"Radon Coefficients (Fourier (Edge ())) [8]\", \"Radon Coefficients (Fourier (Edge ())) [9]\", \"Radon Coefficients (Fourier (Edge ())) [10]\", \"Radon Coefficients (Fourier (Edge ())) [11]\", \"Fractal Features (Fourier (Edge ())) [0]\", \"Fractal Features (Fourier (Edge ())) [1]\", \"Fractal Features (Fourier (Edge ())) [2]\", \"Fractal Features (Fourier (Edge ())) [3]\", \"Fractal Features (Fourier (Edge ())) [4]\", \"Fractal Features (Fourier (Edge ())) [5]\", \"Fractal Features (Fourier (Edge ())) [6]\", \"Fractal Features (Fourier (Edge ())) [7]\", \"Fractal Features (Fourier (Edge ())) [8]\", \"Fractal Features (Fourier (Edge ())) [9]\", \"Fractal Features (Fourier (Edge ())) [10]\", \"Fractal Features (Fourier (Edge ())) [11]\", \"Fractal Features (Fourier (Edge ())) [12]\", \"Fractal Features (Fourier (Edge ())) [13]\", \"Fractal Features (Fourier (Edge ())) [14]\", \"Fractal Features (Fourier (Edge ())) [15]\", \"Fractal Features (Fourier (Edge ())) [16]\", \"Fractal Features (Fourier (Edge ())) [17]\", \"Fractal Features (Fourier (Edge ())) [18]\", \"Fractal Features (Fourier (Edge ())) [19]\", \"Pixel Intensity Statistics (Fourier (Edge ())) [0]\", \"Pixel Intensity Statistics (Fourier (Edge ())) [1]\", \"Pixel Intensity Statistics (Fourier (Edge ())) [2]\", \"Pixel Intensity Statistics (Fourier (Edge ())) [3]\", \"Pixel Intensity Statistics (Fourier (Edge ())) [4]\", \"Gini Coefficient (Fourier (Edge ())) [0]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [0]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [1]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [2]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [3]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [4]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [5]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [6]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [7]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [8]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [9]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [10]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [11]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [12]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [13]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [14]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [15]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [16]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [17]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [18]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [19]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [20]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [21]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [22]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [23]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [24]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [25]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [26]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [27]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [28]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [29]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [30]\", \"Chebyshev-Fourier Coefficients (Wavelet (Edge ())) [31]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [0]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [1]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [2]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [3]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [4]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [5]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [6]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [7]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [8]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [9]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [10]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [11]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [12]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [13]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [14]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [15]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [16]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [17]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [18]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [19]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [20]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [21]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [22]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [23]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [24]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [25]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [26]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [27]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [28]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [29]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [30]\", \"Chebyshev Coefficients (Wavelet (Edge ())) [31]\", \"Zernike Coefficients (Wavelet (Edge ())) [0]\", \"Zernike Coefficients (Wavelet (Edge ())) [1]\", \"Zernike Coefficients (Wavelet (Edge ())) [2]\", \"Zernike Coefficients (Wavelet (Edge ())) [3]\", \"Zernike Coefficients (Wavelet (Edge ())) [4]\", \"Zernike Coefficients (Wavelet (Edge ())) [5]\", \"Zernike Coefficients (Wavelet (Edge ())) [6]\", \"Zernike Coefficients (Wavelet (Edge ())) [7]\", \"Zernike Coefficients (Wavelet (Edge ())) [8]\", \"Zernike Coefficients (Wavelet (Edge ())) [9]\", \"Zernike Coefficients (Wavelet (Edge ())) [10]\", \"Zernike Coefficients (Wavelet (Edge ())) [11]\", \"Zernike Coefficients (Wavelet (Edge ())) [12]\", \"Zernike Coefficients (Wavelet (Edge ())) [13]\", \"Zernike Coefficients (Wavelet (Edge ())) [14]\", \"Zernike Coefficients (Wavelet (Edge ())) [15]\", \"Zernike Coefficients (Wavelet (Edge ())) [16]\", \"Zernike Coefficients (Wavelet (Edge ())) [17]\", \"Zernike Coefficients (Wavelet (Edge ())) [18]\", \"Zernike Coefficients (Wavelet (Edge ())) [19]\", \"Zernike Coefficients (Wavelet (Edge ())) [20]\", \"Zernike Coefficients (Wavelet (Edge ())) [21]\", \"Zernike Coefficients (Wavelet (Edge ())) [22]\", \"Zernike Coefficients (Wavelet (Edge ())) [23]\", \"Zernike Coefficients (Wavelet (Edge ())) [24]\", \"Zernike Coefficients (Wavelet (Edge ())) [25]\", \"Zernike Coefficients (Wavelet (Edge ())) [26]\", \"Zernike Coefficients (Wavelet (Edge ())) [27]\", \"Zernike Coefficients (Wavelet (Edge ())) [28]\", \"Zernike Coefficients (Wavelet (Edge ())) [29]\", \"Zernike Coefficients (Wavelet (Edge ())) [30]\", \"Zernike Coefficients (Wavelet (Edge ())) [31]\", \"Zernike Coefficients (Wavelet (Edge ())) [32]\", \"Zernike Coefficients (Wavelet (Edge ())) [33]\", \"Zernike Coefficients (Wavelet (Edge ())) [34]\", \"Zernike Coefficients (Wavelet (Edge ())) [35]\", \"Zernike Coefficients (Wavelet (Edge ())) [36]\", \"Zernike Coefficients (Wavelet (Edge ())) [37]\", \"Zernike Coefficients (Wavelet (Edge ())) [38]\", \"Zernike Coefficients (Wavelet (Edge ())) [39]\", \"Zernike Coefficients (Wavelet (Edge ())) [40]\", \"Zernike Coefficients (Wavelet (Edge ())) [41]\", \"Zernike Coefficients (Wavelet (Edge ())) [42]\", \"Zernike Coefficients (Wavelet (Edge ())) [43]\", \"Zernike Coefficients (Wavelet (Edge ())) [44]\", \"Zernike Coefficients (Wavelet (Edge ())) [45]\", \"Zernike Coefficients (Wavelet (Edge ())) [46]\", \"Zernike Coefficients (Wavelet (Edge ())) [47]\", \"Zernike Coefficients (Wavelet (Edge ())) [48]\", \"Zernike Coefficients (Wavelet (Edge ())) [49]\", \"Zernike Coefficients (Wavelet (Edge ())) [50]\", \"Zernike Coefficients (Wavelet (Edge ())) [51]\", \"Zernike Coefficients (Wavelet (Edge ())) [52]\", \"Zernike Coefficients (Wavelet (Edge ())) [53]\", \"Zernike Coefficients (Wavelet (Edge ())) [54]\", \"Zernike Coefficients (Wavelet (Edge ())) [55]\", \"Zernike Coefficients (Wavelet (Edge ())) [56]\", \"Zernike Coefficients (Wavelet (Edge ())) [57]\", \"Zernike Coefficients (Wavelet (Edge ())) [58]\", \"Zernike Coefficients (Wavelet (Edge ())) [59]\", \"Zernike Coefficients (Wavelet (Edge ())) [60]\", \"Zernike Coefficients (Wavelet (Edge ())) [61]\", \"Zernike Coefficients (Wavelet (Edge ())) [62]\", \"Zernike Coefficients (Wavelet (Edge ())) [63]\", \"Zernike Coefficients (Wavelet (Edge ())) [64]\", \"Zernike Coefficients (Wavelet (Edge ())) [65]\", \"Zernike Coefficients (Wavelet (Edge ())) [66]\", \"Zernike Coefficients (Wavelet (Edge ())) [67]\", \"Zernike Coefficients (Wavelet (Edge ())) [68]\", \"Zernike Coefficients (Wavelet (Edge ())) [69]\", \"Zernike Coefficients (Wavelet (Edge ())) [70]\", \"Zernike Coefficients (Wavelet (Edge ())) [71]\", \"Comb Moments (Wavelet (Edge ())) [0]\", \"Comb Moments (Wavelet (Edge ())) [1]\", \"Comb Moments (Wavelet (Edge ())) [2]\", \"Comb Moments (Wavelet (Edge ())) [3]\", \"Comb Moments (Wavelet (Edge ())) [4]\", \"Comb Moments (Wavelet (Edge ())) [5]\", \"Comb Moments (Wavelet (Edge ())) [6]\", \"Comb Moments (Wavelet (Edge ())) [7]\", \"Comb Moments (Wavelet (Edge ())) [8]\", \"Comb Moments (Wavelet (Edge ())) [9]\", \"Comb Moments (Wavelet (Edge ())) [10]\", \"Comb Moments (Wavelet (Edge ())) [11]\", \"Comb Moments (Wavelet (Edge ())) [12]\", \"Comb Moments (Wavelet (Edge ())) [13]\", \"Comb Moments (Wavelet (Edge ())) [14]\", \"Comb Moments (Wavelet (Edge ())) [15]\", \"Comb Moments (Wavelet (Edge ())) [16]\", \"Comb Moments (Wavelet (Edge ())) [17]\", \"Comb Moments (Wavelet (Edge ())) [18]\", \"Comb Moments (Wavelet (Edge ())) [19]\", \"Comb Moments (Wavelet (Edge ())) [20]\", \"Comb Moments (Wavelet (Edge ())) [21]\", \"Comb Moments (Wavelet (Edge ())) [22]\", \"Comb Moments (Wavelet (Edge ())) [23]\", \"Comb Moments (Wavelet (Edge ())) [24]\", \"Comb Moments (Wavelet (Edge ())) [25]\", \"Comb Moments (Wavelet (Edge ())) [26]\", \"Comb Moments (Wavelet (Edge ())) [27]\", \"Comb Moments (Wavelet (Edge ())) [28]\", \"Comb Moments (Wavelet (Edge ())) [29]\", \"Comb Moments (Wavelet (Edge ())) [30]\", \"Comb Moments (Wavelet (Edge ())) [31]\", \"Comb Moments (Wavelet (Edge ())) [32]\", \"Comb Moments (Wavelet (Edge ())) [33]\", \"Comb Moments (Wavelet (Edge ())) [34]\", \"Comb Moments (Wavelet (Edge ())) [35]\", \"Comb Moments (Wavelet (Edge ())) [36]\", \"Comb Moments (Wavelet (Edge ())) [37]\", \"Comb Moments (Wavelet (Edge ())) [38]\", \"Comb Moments (Wavelet (Edge ())) [39]\", \"Comb Moments (Wavelet (Edge ())) [40]\", \"Comb Moments (Wavelet (Edge ())) [41]\", \"Comb Moments (Wavelet (Edge ())) [42]\", \"Comb Moments (Wavelet (Edge ())) [43]\", \"Comb Moments (Wavelet (Edge ())) [44]\", \"Comb Moments (Wavelet (Edge ())) [45]\", \"Comb Moments (Wavelet (Edge ())) [46]\", \"Comb Moments (Wavelet (Edge ())) [47]\", \"Haralick Textures (Wavelet (Edge ())) [0]\", \"Haralick Textures (Wavelet (Edge ())) [1]\", \"Haralick Textures (Wavelet (Edge ())) [2]\", \"Haralick Textures (Wavelet (Edge ())) [3]\", \"Haralick Textures (Wavelet (Edge ())) [4]\", \"Haralick Textures (Wavelet (Edge ())) [5]\", \"Haralick Textures (Wavelet (Edge ())) [6]\", \"Haralick Textures (Wavelet (Edge ())) [7]\", \"Haralick Textures (Wavelet (Edge ())) [8]\", \"Haralick Textures (Wavelet (Edge ())) [9]\", \"Haralick Textures (Wavelet (Edge ())) [10]\", \"Haralick Textures (Wavelet (Edge ())) [11]\", \"Haralick Textures (Wavelet (Edge ())) [12]\", \"Haralick Textures (Wavelet (Edge ())) [13]\", \"Haralick Textures (Wavelet (Edge ())) [14]\", \"Haralick Textures (Wavelet (Edge ())) [15]\", \"Haralick Textures (Wavelet (Edge ())) [16]\", \"Haralick Textures (Wavelet (Edge ())) [17]\", \"Haralick Textures (Wavelet (Edge ())) [18]\", \"Haralick Textures (Wavelet (Edge ())) [19]\", \"Haralick Textures (Wavelet (Edge ())) [20]\", \"Haralick Textures (Wavelet (Edge ())) [21]\", \"Haralick Textures (Wavelet (Edge ())) [22]\", \"Haralick Textures (Wavelet (Edge ())) [23]\", \"Haralick Textures (Wavelet (Edge ())) [24]\", \"Haralick Textures (Wavelet (Edge ())) [25]\", \"Haralick Textures (Wavelet (Edge ())) [26]\", \"Haralick Textures (Wavelet (Edge ())) [27]\", \"Multiscale Histograms (Wavelet (Edge ())) [0]\", \"Multiscale Histograms (Wavelet (Edge ())) [1]\", \"Multiscale Histograms (Wavelet (Edge ())) [2]\", \"Multiscale Histograms (Wavelet (Edge ())) [3]\", \"Multiscale Histograms (Wavelet (Edge ())) [4]\", \"Multiscale Histograms (Wavelet (Edge ())) [5]\", \"Multiscale Histograms (Wavelet (Edge ())) [6]\", \"Multiscale Histograms (Wavelet (Edge ())) [7]\", \"Multiscale Histograms (Wavelet (Edge ())) [8]\", \"Multiscale Histograms (Wavelet (Edge ())) [9]\", \"Multiscale Histograms (Wavelet (Edge ())) [10]\", \"Multiscale Histograms (Wavelet (Edge ())) [11]\", \"Multiscale Histograms (Wavelet (Edge ())) [12]\", \"Multiscale Histograms (Wavelet (Edge ())) [13]\", \"Multiscale Histograms (Wavelet (Edge ())) [14]\", \"Multiscale Histograms (Wavelet (Edge ())) [15]\", \"Multiscale Histograms (Wavelet (Edge ())) [16]\", \"Multiscale Histograms (Wavelet (Edge ())) [17]\", \"Multiscale Histograms (Wavelet (Edge ())) [18]\", \"Multiscale Histograms (Wavelet (Edge ())) [19]\", \"Multiscale Histograms (Wavelet (Edge ())) [20]\", \"Multiscale Histograms (Wavelet (Edge ())) [21]\", \"Multiscale Histograms (Wavelet (Edge ())) [22]\", \"Multiscale Histograms (Wavelet (Edge ())) [23]\", \"Tamura Textures (Wavelet (Edge ())) [0]\", \"Tamura Textures (Wavelet (Edge ())) [1]\", \"Tamura Textures (Wavelet (Edge ())) [2]\", \"Tamura Textures (Wavelet (Edge ())) [3]\", \"Tamura Textures (Wavelet (Edge ())) [4]\", \"Tamura Textures (Wavelet (Edge ())) [5]\", \"Radon Coefficients (Wavelet (Edge ())) [0]\", \"Radon Coefficients (Wavelet (Edge ())) [1]\", \"Radon Coefficients (Wavelet (Edge ())) [2]\", \"Radon Coefficients (Wavelet (Edge ())) [3]\", \"Radon Coefficients (Wavelet (Edge ())) [4]\", \"Radon Coefficients (Wavelet (Edge ())) [5]\", \"Radon Coefficients (Wavelet (Edge ())) [6]\", \"Radon Coefficients (Wavelet (Edge ())) [7]\", \"Radon Coefficients (Wavelet (Edge ())) [8]\", \"Radon Coefficients (Wavelet (Edge ())) [9]\", \"Radon Coefficients (Wavelet (Edge ())) [10]\", \"Radon Coefficients (Wavelet (Edge ())) [11]\", \"Fractal Features (Wavelet (Edge ())) [0]\", \"Fractal Features (Wavelet (Edge ())) [1]\", \"Fractal Features (Wavelet (Edge ())) [2]\", \"Fractal Features (Wavelet (Edge ())) [3]\", \"Fractal Features (Wavelet (Edge ())) [4]\", \"Fractal Features (Wavelet (Edge ())) [5]\", \"Fractal Features (Wavelet (Edge ())) [6]\", \"Fractal Features (Wavelet (Edge ())) [7]\", \"Fractal Features (Wavelet (Edge ())) [8]\", \"Fractal Features (Wavelet (Edge ())) [9]\", \"Fractal Features (Wavelet (Edge ())) [10]\", \"Fractal Features (Wavelet (Edge ())) [11]\", \"Fractal Features (Wavelet (Edge ())) [12]\", \"Fractal Features (Wavelet (Edge ())) [13]\", \"Fractal Features (Wavelet (Edge ())) [14]\", \"Fractal Features (Wavelet (Edge ())) [15]\", \"Fractal Features (Wavelet (Edge ())) [16]\", \"Fractal Features (Wavelet (Edge ())) [17]\", \"Fractal Features (Wavelet (Edge ())) [18]\", \"Fractal Features (Wavelet (Edge ())) [19]\", \"Pixel Intensity Statistics (Wavelet (Edge ())) [0]\", \"Pixel Intensity Statistics (Wavelet (Edge ())) [1]\", \"Pixel Intensity Statistics (Wavelet (Edge ())) [2]\", \"Pixel Intensity Statistics (Wavelet (Edge ())) [3]\", \"Pixel Intensity Statistics (Wavelet (Edge ())) [4]\", \"Gini Coefficient (Wavelet (Edge ())) [0]\")\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "\r",
      "  |                                                                       \r",
      "  |..........                                                       |  16%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |...........                                                      |  17%\n",
      "label: unnamed-chunk-8 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |............                                                     |  18%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |............                                                     |  19%\n",
      "label: unnamed-chunk-9 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.............                                                    |  20%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |..............                                                   |  21%\n",
      "label: unnamed-chunk-10 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |..............                                                   |  22%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |...............                                                  |  23%\n",
      "label: unnamed-chunk-11 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |................                                                 |  24%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |................                                                 |  25%\n",
      "label: unnamed-chunk-12 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.................                                                |  26%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |..................                                               |  27%\n",
      "label: unnamed-chunk-13 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |..................                                               |  28%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |...................                                              |  29%\n",
      "label: unnamed-chunk-14 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |....................                                             |  30%\n",
      "   inline R code fragments\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |....................                                             |  31%\n",
      "label: unnamed-chunk-15 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.....................                                            |  32%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |......................                                           |  33%\n",
      "label: unnamed-chunk-16 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |......................                                           |  34%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.......................                                          |  35%\n",
      "label: unnamed-chunk-17 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |........................                                         |  36%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |........................                                         |  38%\n",
      "label: unnamed-chunk-18 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.........................                                        |  39%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |..........................                                       |  40%\n",
      "label: unnamed-chunk-19 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |..........................                                       |  41%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |...........................                                      |  42%\n",
      "label: unnamed-chunk-20 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |............................                                     |  43%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |............................                                     |  44%\n",
      "label: unnamed-chunk-21 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.............................                                    |  45%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |..............................                                   |  46%\n",
      "label: unnamed-chunk-22 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |..............................                                   |  47%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |...............................                                  |  48%\n",
      "label: unnamed-chunk-23 (with options) \n",
      "List of 4\n",
      " $ fig.height: num 4\n",
      " $ fig.width : num 8\n",
      " $ message   : symbol F\n",
      " $ echo      : symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |................................                                 |  49%\n",
      "   inline R code fragments\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |................................                                 |  50%\n",
      "label: unnamed-chunk-24 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.................................                                |  51%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |..................................                               |  52%\n",
      "label: unnamed-chunk-25 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |...................................                              |  53%\n",
      "   inline R code fragments\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |...................................                              |  54%\n",
      "label: unnamed-chunk-26 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |....................................                             |  55%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.....................................                            |  56%\n",
      "label: unnamed-chunk-27 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.....................................                            |  57%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |......................................                           |  58%\n",
      "label: unnamed-chunk-28 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.......................................                          |  59%\n",
      "   inline R code fragments\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.......................................                          |  60%\n",
      "label: unnamed-chunk-29\n",
      "\r",
      "  |                                                                       \r",
      "  |........................................                         |  61%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.........................................                        |  62%\n",
      "label: unnamed-chunk-30\n",
      "\r",
      "  |                                                                       \r",
      "  |.........................................                        |  64%\n",
      "   inline R code fragments\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |..........................................                       |  65%\n",
      "label: unnamed-chunk-31 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |...........................................                      |  66%\n",
      "   inline R code fragments\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |...........................................                      |  67%\n",
      "label: unnamed-chunk-32 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |............................................                     |  68%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.............................................                    |  69%\n",
      "label: unnamed-chunk-33 (with options) \n",
      "List of 2\n",
      " $ echo   : symbol F\n",
      " $ message: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.............................................                    |  70%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |..............................................                   |  71%\n",
      "label: unnamed-chunk-34 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |...............................................                  |  72%\n",
      "   inline R code fragments\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |...............................................                  |  73%\n",
      "label: unnamed-chunk-35 (with options) \n",
      "List of 4\n",
      " $ fig.height: num 3\n",
      " $ fig.width : num 9\n",
      " $ message   : symbol F\n",
      " $ echo      : symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |................................................                 |  74%\n",
      "   inline R code fragments\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.................................................                |  75%\n",
      "label: unnamed-chunk-36\n",
      "\r",
      "  |                                                                       \r",
      "  |.................................................                |  76%\n",
      "   inline R code fragments\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |..................................................               |  77%\n",
      "label: unnamed-chunk-37 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |...................................................              |  78%\n",
      "   inline R code fragments\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |...................................................              |  79%\n",
      "label: unnamed-chunk-38\n",
      "\r",
      "  |                                                                       \r",
      "  |....................................................             |  80%\n",
      "   inline R code fragments\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.....................................................            |  81%\n",
      "label: unnamed-chunk-39 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.....................................................            |  82%\n",
      "   inline R code fragments\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |......................................................           |  83%\n",
      "label: unnamed-chunk-40\n",
      "\r",
      "  |                                                                       \r",
      "  |.......................................................          |  84%\n",
      "   inline R code fragments\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |........................................................         |  85%\n",
      "label: unnamed-chunk-41 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |........................................................         |  86%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.........................................................        |  88%\n",
      "label: unnamed-chunk-42 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |..........................................................       |  89%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |..........................................................       |  90%\n",
      "label: unnamed-chunk-43 (with options) \n",
      "List of 3\n",
      " $ fig.height: num 10\n",
      " $ fig.width : num 10\n",
      " $ echo      : symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |...........................................................      |  91%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |............................................................     |  92%\n",
      "label: unnamed-chunk-44 (with options) \n",
      "List of 1\n",
      " $ echo: symbol F\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |............................................................     |  93%\n",
      "  ordinary text without R code\n",
      "\n",
      "\r",
      "  |                                                                       \r",
      "  |.............................................................    |  94%\n",
      "label: unnamed-chunk-45 (with options) \n",
      "List of 3\n",
      " $ echo   : symbol F\n",
      " $ warning: symbol F\n",
      " $ message: symbol F\n",
      "\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Quitting from lines 422-424 (pipeline.Rmd) \n"
     ]
    },
    {
     "ename": "ERROR",
     "evalue": "Error in library(lsa, quietly = T): there is no package called 'lsa'\n",
     "output_type": "error",
     "traceback": [
      "Error in library(lsa, quietly = T): there is no package called 'lsa'\nTraceback:\n",
      "1. rmarkdown::render(\"pipeline.Rmd\")",
      "2. knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet, \n .     encoding = encoding)",
      "3. process_file(text, output)",
      "4. withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), \n .     error = function(e) {\n .         setwd(wd)\n .         cat(res, sep = \"\\n\", file = output %n% \"\")\n .         message(\"Quitting from lines \", paste(current_lines(i), \n .             collapse = \"-\"), \" (\", knit_concord$get(\"infile\"), \n .             \") \")\n .     })",
      "5. process_group(group)",
      "6. process_group.block(group)",
      "7. call_block(x)",
      "8. block_exec(params)",
      "9. in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE, \n .     keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), \n .     stop_on_error = if (options$error && options$include) 0L else 2L, \n .     output_handler = knit_handlers(options$render, options)))",
      "10. evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), \n  .     keep_message = !isFALSE(options$message), stop_on_error = if (options$error && \n  .         options$include) 0L else 2L, output_handler = knit_handlers(options$render, \n  .         options))",
      "11. evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, \n  .     debug = debug, last = i == length(out), use_try = stop_on_error != \n  .         2L, keep_warning = keep_warning, keep_message = keep_message, \n  .     output_handler = output_handler, include_timing = include_timing)",
      "12. timing_fn(handle(ev <- withCallingHandlers(withVisible(eval(expr, \n  .     envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)))",
      "13. handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, \n  .     enclos)), warning = wHandler, error = eHandler, message = mHandler))",
      "14. withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, \n  .     error = eHandler, message = mHandler)",
      "15. withVisible(eval(expr, envir, enclos))",
      "16. eval(expr, envir, enclos)",
      "17. eval(expr, envir, enclos)",
      "18. measures.get_cosineSimilarityMatrix(features)",
      "19. library(lsa, quietly = T)",
      "20. stop(txt, domain = NA)"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "\n"
     ]
    }
   ],
   "source": [
    "rmarkdown::render('pipeline.Rmd')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 29,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "195"
      ],
      "text/latex": [
       "195"
      ],
      "text/markdown": [
       "195"
      ],
      "text/plain": [
       "[1] 195"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "nrow(data)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 30,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "\n",
       " CTRL   MIT OTHER   SEC NO_PH \n",
       "    0    29    43    12   111 "
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "table(data$tag)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 31,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "\n",
       "                  abnormal chromosome segregation phenotype \n",
       "                                                          0 \n",
       "                           abnormal nucleus shape phenotype \n",
       "                                                          0 \n",
       "     absence of mitotic chromosome decondensation phenotype \n",
       "                                                          0 \n",
       "                              graped micronucleus phenotype \n",
       "                                                          0 \n",
       "              mitotic metaphase plate congression phenotype \n",
       "                                                          0 \n",
       "                                                   notarget \n",
       "                                                          0 \n",
       "                             prometaphase delayed phenotype \n",
       "                                                          0 \n",
       "               strong decrease in rate of protein secretion \n",
       "                                                          0 \n",
       "                                       cell death phenotype \n",
       "                                                          2 \n",
       "                           increased cell movement distance \n",
       "                                                          2 \n",
       "                                metaphase delayed phenotype \n",
       "                                                          2 \n",
       "                 mild decrease in rate of protein secretion \n",
       "                                                          2 \n",
       "                              increased cell movement speed \n",
       "                                                          3 \n",
       "                                   binuclear cell phenotype \n",
       "                                                          6 \n",
       "                                        proliferating cells \n",
       "                                                          8 \n",
       "                                  mitosis delayed phenotype \n",
       "                                                          9 \n",
       "decreased rate of intracellular protein transport phenotype \n",
       "                                                         10 \n",
       "                           increased nucleus size phenotype \n",
       "                                                         12 \n",
       "       increased variability of nuclear shape in population \n",
       "                                                         28 \n",
       "                                                nophenotype \n",
       "                                                        111 "
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "utils.sort_vector(table(data$specificName))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Warning message in normalizePath(path, winslash = winslash, mustWork = mustWork):\n",
      "“path[1]=\"test_HDF5.Rmd\": No such file or directory”"
     ]
    },
    {
     "ename": "ERROR",
     "evalue": "Error in tools::file_path_as_absolute(input): file 'test_HDF5.Rmd' does not exist\n",
     "output_type": "error",
     "traceback": [
      "Error in tools::file_path_as_absolute(input): file 'test_HDF5.Rmd' does not exist\nTraceback:\n",
      "1. rmarkdown::render(\"test_HDF5.Rmd\")",
      "2. setwd(dirname(tools::file_path_as_absolute(input)))",
      "3. dirname(tools::file_path_as_absolute(input))",
      "4. tools::file_path_as_absolute(input)",
      "5. stop(gettextf(\"file '%s' does not exist\", x), domain = NA)"
     ]
    }
   ],
   "source": [
    "rmarkdown::render('test_HDF5.Rmd')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "\n",
      "\n",
      "processing file: test_HDF5.Rmd\n"
     ]
    }
   ],
   "source": [
    "rmarkdown::render('test_HDF5.Rmd')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "filename"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": []
  }
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