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NGLview for QM analysis

This notebook introduces some relevant features of NGLview useful to analyze QM calculations. In this case, Psi4 is used in order to generate the QM data.

Requirements

The notebook has been tested with python3.7. Older versions may not work.

The following packages are used, which can be installed through ´conda´:

  • nglview

    conda install -c conda-forge nglview

  • ASE

    conda install -c conda-forge ase

  • psi4

    conda install -c psi4 psi4

  • ipywidgets

    conda install -c conda-forge ipywidgets

  • matplotlib

    conda install -c conda-forge matplotlib

  • ipympl

    conda install -c conda-forge ipympl

License

Copyright 2021 Javier Cerezo, [email protected]

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.