MANIFEST.in

include README.rst
include LICENSE.txt

# include test modules in pyemma directory
#recursive-include pyemma/msm/tests
#recursive-include pyemma/msm/io/tests
#recursive-include pyemma/msm/io/matrix/testfiles

recursive-include pyemma tests/* tests/data/*
recursive-include pyemma testfiles/*


# exclude compiled bytecode
global-exclude *.pyc
# exclude git backup files
global-exclude *.orig

# versioneer
include versioneer.py
include pyemma/_version.py

# setup stuff
include setup_util.py

# documentation
graft doc
prune doc/build
prune doc/source/generated
prune doc/source/api/generated

# ipython notebooks
#graft pyemma-ipython
#recursive-exclude pyemma-ipython .ipynb_checkpoints

# exclude git related files
recursive-exclude * git .git*

# sources of extensions (incl. cython)
recursive-include pyemma *.pyx *.h *.c

# do not include eventually present eggs (installed during setup runtime)
prune .eggs