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Any plans for multi-threading support in trimAl ? #21

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tseemann opened this issue Apr 4, 2015 · 2 comments
Open

Any plans for multi-threading support in trimAl ? #21

tseemann opened this issue Apr 4, 2015 · 2 comments
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@tseemann
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tseemann commented Apr 4, 2015

Are there any plans to support multi-threading?

I understand it is not trivial to implement, but OpenMP pragmas could make it easy to parallelize parts of the code that loop over columns because they are independent operations?

I work on DNA alignments with 5,000,000 columns and 100s of rows, and most operations are surprisingly slow.
@scapella scapella self-assigned this Apr 5, 2015
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scapella commented Apr 5, 2015

So far I haven't plan anything in this direction. However, I'm open to collaborate with you implementing this functionality.

@cahuparo
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Do you have any progress on multi-threading?

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@scapella @tseemann @cahuparo