EXCEPTION_ACCESS_VIOLATION (0xc0000005)

[UserA213]

Hi,

I am trying to run imagej with a script in spyder however I am getting this issue below. Any help would be highly appreciated.

C:\Users\userA\AppData\Local\anaconda3\envs\pyimagej\lib\site-packages\paramiko\transport.py:219: CryptographyDeprecationWarning: Blowfish has been deprecated
  "class": algorithms.Blowfish,
Failed to guess the Java version.

#
# A fatal error has been detected by the Java Runtime Environment:
#
#  EXCEPTION_ACCESS_VIOLATION (0xc0000005) at pc=0x00007ff99aca64f9, pid=16440, tid=5172
#
# JRE version:  (11.0.13+7) (build )
# Java VM: OpenJDK 64-Bit Server VM (11.0.13+7-b1751.21, mixed mode, sharing, tiered, compressed oops, g1 gc, windows-amd64)
# Problematic frame:
# C  0x00007ff99aca64f9
#
# No core dump will be written. Minidumps are not enabled by default on client versions of Windows
#
# An error report file with more information is saved as:
# C:\Users\userA\Desktop\scripts\hs_err_pid16440.log
#
#


Windows fatal exception: access violation


Main thread:
Current thread 0x00001434 (most recent call first):
  File "C:\Users\userA\AppData\Local\anaconda3\envs\pyimagej\lib\site-packages\jpype\_core.py", line 224 in startJVM
  File "C:\Users\userA\AppData\Local\anaconda3\envs\pyimagej\lib\site-packages\scyjava\_java.py", line 234 in start_jvm
  File "C:\Users\userA\AppData\Local\anaconda3\envs\pyimagej\lib\site-packages\imagej\__init__.py", line 1424 in _create_jvm
  File "C:\Users\userA\AppData\Local\anaconda3\envs\pyimagej\lib\site-packages\imagej\__init__.py", line 1200 in init
  File "c:\users\userA\desktop\scripts\stich_traction_3110.py", line 79 in <module>
  File "C:\Users\userA\AppData\Local\anaconda3\envs\pyimagej\lib\site-packages\spyder_kernels\py3compat.py", line 356 in compat_exec
  File "c:\users\userA\appdata\local\anaconda3\envs\pyimagej\lib\site-packages\spyder_kernels\customize\spydercustomize.py", line 473 in exec_code
  File "c:\users\userA\appdata\local\anaconda3\envs\pyimagej\lib\site-packages\spyder_kernels\customize\spydercustomize.py", line 615 in _exec_file
  File "c:\users\userA\appdata\local\anaconda3\envs\pyimagej\lib\site-packages\spyder_kernels\customize\spydercustomize.py", line 528 in runfile
  File "C:\Users\userA\AppData\Local\Temp\ipykernel_16440\2937552509.py", line 1 in <module>


Main thread:
Current thread 0x00001434 (most recent call first):
  File "C:\Users\userA\AppData\Local\anaconda3\envs\pyimagej\lib\site-packages\jpype\_core.py", line 224 in startJVM
  File "C:\Users\userA\AppData\Local\anaconda3\envs\pyimagej\lib\site-packages\scyjava\_java.py", line 234 in start_jvm
  File "C:\Users\userA\AppData\Local\anaconda3\envs\pyimagej\lib\site-packages\imagej\__init__.py", line 1424 in _create_jvm
  File "C:\Users\userA\AppData\Local\anaconda3\envs\pyimagej\lib\site-packages\imagej\__init__.py", line 1200 in init
  File "c:\users\userA\desktop\scripts\stich_traction_3110.py", line 79 in <module>
  File "C:\Users\userA\AppData\Local\anaconda3\envs\pyimagej\lib\site-packages\spyder_kernels\py3compat.py", line 356 in compat_exec
  File "c:\users\userA\appdata\local\anaconda3\envs\pyimagej\lib\site-packages\spyder_kernels\customize\spydercustomize.py", line 473 in exec_code
  File "c:\users\userA\appdata\local\anaconda3\envs\pyimagej\lib\site-packages\spyder_kernels\customize\spydercustomize.py", line 615 in _exec_file
  File "c:\users\userA\appdata\local\anaconda3\envs\pyimagej\lib\site-packages\spyder_kernels\customize\spydercustomize.py", line 528 in runfile
  File "C:\Users\userA\AppData\Local\Temp\ipykernel_16440\2937552509.py", line 1 in <module>

[elevans]

Hi @UserA213,

It would be helpful if you could tell us what system you're running (Windows 10? 11?), what version of PyImageJ you are using and how you installed it (i.e. did you install it via conda or from source?) and provide a minimal example that reproduces this failure.

[imagesc-bot]

This issue has been mentioned on Image.sc Forum. There might be relevant details there:

https://forum.image.sc/t/fiji-friends-weekly-dev-update-thread/103718/41