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BibFile.bib
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@online{AFSC2016,
author = {Alaska Fisheries Science Center},
title = {{Assessment of the Other Rockfish stock complex in the Gulf of Alaska}},
year = 2016,
url = {https://www.afsc.noaa.gov/REFM/Docs/2016/GOAorock.pdf},
urldate = {2017-06-18}
}
@phdthesis{Abrams2014,
author = {Abrams, J.L.},
pages = {148},
school = {Humboldt State University},
title = {{The effect of local fishing pressure on the size and age structure of fishes associated with rocky habitats along California's north coast}},
year = {2014}
}
@article{Alverson1964,
author = {Alverson, D L and Pruter, a T and Ronholt, L L},
journal = {Institute of Fisheries, University of British Columbia},
title = {{A Study of Demersal Fishes and Fisheries of the Northeastern Pacific Ocean}},
year = {1964}
}
@phdthesis{Anderson1983,
author = {Anderson, TW},
school = {Fresno State University},
title = {{Identification and development of nearshore juvenile rockfishes (genus \emph{Sebastes}) in central California kelp forests}},
type = {Masters Thesis},
year = {1983}
}
@article{Beamish1979,
author = {Beamish, RJ},
journal = {Journal of the Fisheries Board of Canada},
pages = {1395--1400},
title = {{New information on the longevity of Pacific ocean perch (\emph{Sebastes alutus})}},
volume = {36},
year = {1979}
}
@article{Beyer2015,
title={Variability in rockfish (Sebastes spp.) fecundity: species contrasts, maternal size effects, and spatial differences},
author={Beyer, Sabrina G and Sogard, Susan M and Harvey, Chris J and Field, John C},
journal={Environmental biology of fishes},
volume={98},
number={1},
pages={81--100},
year={2015},
publisher={Springer}
}
@article{Bodkin1986,
author = {Bodkin, JL},
journal = {Fishery Bulletin},
pages = {799--808},
title = {{Fish assemblages in \emph{Macrocystis} and \emph{Nereocystis} kelp forests off central California.}},
volume = {84},
year = {1986}
}
@article{Botsford2002,
author = {Botsford, LW and Lawrence, CA},
journal = {Progress in Oceanography},
pages = {283--305},
title = {{Patterns of co-variability among California Current chinook salmon, coho salmon, Dungeness crab, and physical oceanographic conditions}},
volume = {53},
year = {2002}
}
@article{Bradburn2011,
title = {The 2003 to 2008 {US} {West} {Coast} bottom trawl surveys of groundfish resources off {Washington}, {Oregon}, and {California}: estimates of distribution, abundance, length, and age composition},
journal = {NOAA Technical Memorandum NMFS NOAA-TM-NMFS-NWFSC-114},
author = {Bradburn, M.J. and Keller, A.A and Horness, B.H.},
year = {2011},
pages = {323 pp.}
}
@article{Buckley1967,
author = {Buckley, R.M.},
journal = {Supplemental progress report. Department of Fisheries. State of Washington.},
title = {{1965 bottomfish sport fishery. Sport fishery investigations 1965}},
year = {1967}
}
@article{Buonaccorsi2002,
author = {Buonaccorsi, VP},
journal = {Canadian Journal of Fisheries and Aquatic Sciences},
pages = {1374--1384},
title = {{Population structure of copper rockfish (\emph{Sebastes caurinus}) reflects postglacial colonization and contemporary patterns of larval dispersal}},
volume = {59},
year = {2002}
}
@article{Buonaccorsi2004,
author = {Buonaccorsi, VP and Westerman, M and Stannard, J},
journal = {Marine Biology},
pages = {779--788},
title = {{Molecular genetic structure suggests limited larval dispersal in grass rockfish, \emph{Sebastes rastrelliger}}},
volume = {145},
year = {2004}
}
@article{Burford2008,
author = {Burford, MO and Bernardi, G},
journal = {Marine Biology},
pages = {701--717},
title = {{Incipient speciation within a subgenus of rockfish (\emph\{Sebastosomus}) provides evidence of recent radiations within an ancient species flock}},
volume = {154},
year = {2008}
}
@article{Burton1998,
author = {Burton, RS},
journal = {Evolution},
pages = {734--745},
title = {{Intraspecific phylogeography across the Point Conception biogeographic boundary}},
url = {http://www.jstor.org/stable/2411268},
volume = {52},
year = {1998}
}
@techreport{DFO2015,
author = {{Canadian Science Advisory Secretariat}},
pages = {14},
title = {{Yellowtail Rockfish (Sebastes flavidus) Stock assessment for the Coast of British Columbia, Canada}},
institution = {{Science Advisory Report 2015/010}},
year = {2015}
}
@article{Carlson1981,
author = {Carlson, HR and Straty, RR},
journal = {Marine Fisheries Review},
number = {7},
pages = {13--19},
title = {{Habitat and nursery grounds of Pacific rockfish, \emph\{Sebastes} spp., in rocky coastal areas of southeastern Alaska}},
url = {http://www.nativefishlab.net/library/textpdf/17424.pdf},
volume = {43},
year = {1981}
}
@article{CalCOFI2002,
author = {CDFG},
journal = {California Cooperative Oceanic Fisheries Investigations Reports},
keywords = {China2015},
mendeley-tags = {China2015},
pages = {13--30},
title = {{Review of Some California Fisheries for 2001: market squid, sea urchin, dungeness crab, lobster, prawn, abalone, groundfish, swordfish and shark, coastal pelagic finfish, ocean salmon, nearshore live-fish, Pacific herring, white seabass, and kelp}},
volume = {43},
year = {2002}
}
@article{Checkley2009,
author = {Checkley, DM and Barth, JA},
journal = {Progress in Oceanography},
pages = {49--64},
title = {{Patterns and processes in the California Current System}},
volume = {83},
year = {2009}
}
@book{Coleman1986,
title={The 1980 Pacific West Coast bottom trawl survey of groundfish resources: estimates of distribution, abundance, length and age composition},
author={Coleman, Brady A},
year={1986},
publisher={National Oceanic and Atmospheric Administration, National Marine Fisheries Service, Northwest and Alaska Fisheries Center, Resource Assessment and Conservation Engineering Division}
}
@article{Cope2011,
author = {Cope, Jason M and DeVore, John and Dick, E J and Ames, Kelly and Budrick, John and Erickson, Daniel L. and Grebel, Joanna and Hanshew, Gretchen and Jones, Robert and Mattes, Lynn and Niles, Corey and Williams, Sarah},
journal = {North American Journal of Fisheries Management},
pages = {589--604},
title = {{An approach to defining stock complexes for U.S. West Coast groundfishes using vulnerabilities and ecological distributions}},
volume = {31},
year = {2011}
}
@article{Cope2013,
title={Data-moderate stock assessments for brown, China, copper, sharpchin, stripetail, and yellowtail rockfishes and English and rex soles in 2013},
author={Cope, Jason and Dick, EJ and MacCall, Alec and Monk, Melissa and Soper, Braden and Wetzel, Chantel},
journal={National Oceanic and Atmospheric Administration, National Marine Fisheries Service},
year={2013}
}
@techreport{Cope2015,
address = {Portland, OR},
author = {Cope, Jason and Dick, E.J. and Maccall, Alec and Monk, Melissa and Soper, Braden and Wetzel, Chantell},
institution = {Pacific Fisheries Management Council},
keywords = {China2015},
mendeley-tags = {China2015},
pages = {298},
title = {{Data-moderate stock assessments for brown, China, copper, sharpchin, stripetail, and yellowtail rockfishes and English and rex soles in 2013}},
year = {2015}
}
@article{Cope2004,
author = {Cope, JM},
journal = {Canadian Journal of Fisheries and Aquatic Sciences},
pages = {332--342},
title = {{Population genetics and phylogeography of the blue rockfish (Sebastes mystinus) from Washington to California}},
volume = {61},
year = {2004}
}
@misc{East2012,
author = {{Data East}},
title = {{XTools Pro for ArcGIS Desktop. 9.1 (Build 956): Data East, LLC.}},
url = {http://www.xtoolspro.com/},
year = {2012}
}
@article{Dawson2001,
author = {Dawson, MN},
journal = {Journal of Biogeography},
pages = {723--736},
title = {{Phylogeography in coastal marine animals: a solution from California?}},
url = {http://onlinelibrary.wiley.com/doi/10.1046/j.1365-2699.2001.00572.x/full},
volume = {28},
year = {2001}
}
@article{Dick2010,
author = {Dick, E J and MacCall, Alec D.},
journal = {NOAA Technical Memorandum NMFS NOAA-TM-NMFS-SWFSC-460},
title = {{Estimates of sustainable yield for 50 data-poor stocks in the Pacific Coast Groundfish Fishery Management Plan}},
year = {2010}
}
@article{Dick2011,
author = {Dick, E. J. and MacCall, Alec D.},
issn = {01657836},
journal = {Fisheries Research},
keywords = {Data-poor stock assessment,Depletion-Corrected Average Catch,Monte Carlo methods,Stochastic stock reduction analysis},
number = {2},
pages = {331--341},
title = {{Depletion-Based Stock Reduction Analysis: A catch-based method for determining sustainable yields for data-poor fish stocks}},
volume = {110},
year = {2011}
}
@techreport{Dick2010,
author = {Dick E. J. and MacCall A. D.},
booktitle = {NOAA Technical Memorandum NMFS},
institution = {Department of Commerce},
number = {NOAA-TM-NM FS-SWFSC-460},
pages = {208},
title = {{Estimates of sustainable yield for 50 data-poor stocks in the Pacific coast groundfish fishery management plan}},
year = {2010}
}
@phdthesis{Dick2009,
author = {Dick, E.J.},
school = {University of California Santa Cruz},
title = {{Modeling the reproductive potential of rockfishes (\emph{Sebastes} spp.)}},
type = {PhD Dissertation},
year = {2009}
}
@article{Dick2017,
title={A meta-analysis of fecundity in rockfishes (genus Sebastes)},
author={Dick, EJ and Beyer, Sabrina and Mangel, Marc and Ralston, Stephen},
journal={Fisheries Research},
volume={187},
pages={73--85},
year={2017},
publisher={Elsevier}
}
@article{Douglas1998,
author = {Douglas, D.A.},
journal = {Oregon Deptartment of Fish and Wildlife. Marine Program Data Series Report.},
title = {{Species composition of rockfish catches by Oregon trawlers, 1963-93}},
year = {1998}
}
@article{Drake2013,
author = {Drake, PT and Edwards, CA},
journal = {Journal of Marine Research},
pages = {317--350},
title = {{Influence of larval behavior on transport and population connectivity in a realistic simulation of the California Current System}},
volume = {71},
year = {2013}
}
@article{Echeverria1987,
author = {Echeverria, T.W.},
journal = {Fishery Bulletin},
pages = {229--250},
title = {{Thirty-four species of California rockfishes: maturity and seasonality of reproduction}},
volume = {85},
year = {1987}
}
@article{Eldridge1991,
title={Reproductive performance of yellowtail rockfish, Sebastes flavidus},
author={Eldridge, Maxwell B and Whipple, Jeannette A and Bowers, Michael J and Jarvis, Brian M and Gold, Jordan},
journal={Environmental biology of fishes},
volume={30},
number={1},
pages={91--102},
year={1991},
publisher={Springer}
}
@article{Field2005,
author = {Field, JC and Ralston, S},
journal = {Canadian Journal of Fisheries and Aquatic Sciences},
pages = {2199--2210},
title = {{Spatial variability in rockfish (Sebastes spp.) recruitment events in the California Current System}},
volume = {62},
year = {2005}
}
@article{FishBull1936,
title={Cabrilla and grouper},
author={FishBull},
journal={The Commercial Fish Catch of California for the Year 1935. California Fish Game Fishery Bulletin},
volume={49},
year={1936}
}
@article{Fisk1993,
author = {Fisk, MR and Duncan, RA and Fox, CG and Witter, JB},
journal = {Marine Geophysical Researches},
pages = {283--296},
title = {{Emergence and petrology of the Mendocino Ridge}},
volume = {15},
year = {1993}
}
@article{Fournier2012,
title={AD Model Builder: using automatic differentiation for statistical inference of highly parameterized complex nonlinear models},
author={Fournier, David A and Skaug, Hans J and Ancheta, Johnoel and Ianelli, James and Magnusson, Arni and Maunder, Mark N and Nielsen, Anders and Sibert, John},
journal={Optimization Methods and Software},
volume={27},
number={2},
pages={233--249},
year={2012},
publisher={Taylor \& Francis}
}
@article{Fraidenburg1980,
title={Yellowtail Rockfish, Sebastes-flavidus, Length and Age Composition Off California, Oregon, and Washington in 1977},
author={Fraidenburg, ME},
journal={Marine Fisheries Review},
volume={42},
number={3-4},
pages={54--56},
year={1980},
publisher={Natl Marine Fisheries qervice Scientific Subl Office 7600 Sand Point Way NE bin c15700, Seattle, WA 98115}
}
@article{Francis2011,
author = {Francis, R.I.C.C.},
journal = {Canadian Journal of Fisheries and Aquatic Sciencies},
pages = {1124--1138},
title = {{Data weighting in statistical fisheries stock assessment models}},
volume = {68},
year = {2011}
}
@article{Francis2009,
author = {Francis, RC and Little, JE and Bloeser, JA},
journal = {A report to the Lensfest Ocean Program at The Pew Charitable Trust},
title = {{Matching spatial scales of ecology, economy, and management for groundfish of the U.S. West Coast marine ecosystem: a state of the science review}},
year = {2009}
}
@misc{Goldfinger2014,
author = {Goldfinger, Chris and Henkel, Sarah and Romsos, Chris and {Andrea Havron}, Brandi Black},
pages = {161},
publisher = {US Dept. of the Interior, Bureau of Ocean Energy Management, Pacific OCS Region. OCS Study BOEM 2014-662},
title = {{Benthic habitat characterization offshore the Pacific Northwest volume 1: evaluation of continental shelf feology}},
year = {2014}
}
@article{Gottscho2014,
author = {Gottscho, AD},
journal = {Biological Reviews},
pages = {1--21},
title = {{Zoogeography of the San Andreas Fault system: Great Pacific Fracture Zones correspond with spatially concordant phylogeographic boundaries in western North}},
volume = {2014},
year = {2014}
}
@article{Greene1999,
author = {Greene, H. Gary and Yoklavich, Mary M. and Starr, Richard M. and O'Connell, Victoria M. and Wakefield, W. Waldo and Sullivan, Deidre E. and McRea, James E. and Cailliet, Gregor M.},
journal = {Oceanologica Acta},
keywords = {Benthic,Fisheries management,Habitat,Universal classification},
pages = {663--678},
title = {{A classification scheme for deep seafloor habitats}},
volume = {22},
year = {1999}
}
@book{Gunderson1980,
title = {Distribution and abundance of rockfish off {Washington}, {Oregon} and {California} during 1977},
url = {http://spo.nmfs.noaa.gov/mfr423-4/mfr423-42.pdf},
urldate = {2017-02-28},
publisher = {Northwest and Alaska Fisheries Center, National Marine Fisheries Service},
author = {Gunderson, Donald Raymond and Sample, Terrance M.},
year = {1980},
}
@article{Hamel2015,
title = {A method for calculating a meta-analytical prior for the natural mortality rate using multiple life history correlates},
volume = {72},
issn = {1054-3139, 1095-9289},
url = {http://icesjms.oxfordjournals.org/content/72/1/62},
doi = {10.1093/icesjms/fsu131},
language = {en},
number = {1},
urldate = {2016-10-16},
journal = {ICES Journal of Marine Science: Journal du Conseil},
author = {Hamel, Owen S.},
month = jan,
year = {2015},
pages = {62--69},
}
@article{Hanan2012,
author = {Hanan, DA and Curry, BE},
journal = {Open Fish Science Journal},
pages = {30--43},
title = {{Long-term movement patterns and habitat use of nearshore groundfish: tag-recapture in central and southern California waters}},
volume = {5},
year = {2012}
}
@article{Hannah2011a,
author = {Hannah, R.W. and Blume, M.T.O.},
journal = {Oregon Department of Fish and Wildlife Information Reports Number 2011-01},
title = {{Maturity of female quillback (\emph\{Sebastes maliger}) and china rockfish (\emph{S. nebulosus}) from Oregon waters based on histological evaluation of ovaries}},
year = {2011}
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@article{Hannah2011,
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urldate = {2016-07-11},
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@article{Thorson2017b,
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@article{Thorson_geostatistical_2015,
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