author: 赵华男 | ZHAO Hua-nan
email: [email protected]
snakepipes_ATAC-seq is a standard snakemake pipeline for ATAC-seq sequencing data
conda env create -f conda_env.yml# run Jupyter notebook to abtain the config
# run this cmd
# or
# open notebook and run all cells
runipy step.01.GetFileName.ipynb
# dry run for test
snakemake -pr -j 10 -s step.02.Snakefile.smk.py -n
# run calculation
snakemake -pr -j 10 -s step.02.Snakefile.smk.py