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downsamoling.sh error #5

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songxh1996 opened this issue Apr 22, 2024 · 0 comments
Open

downsamoling.sh error #5

songxh1996 opened this issue Apr 22, 2024 · 0 comments

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@songxh1996
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hello,When I run the following command, I get an error. I can't get the final bam file, am I missing some key steps?

sh downsampling.sh D2pime.bam .bam 0.1 0.2 0.3 0.4 0.8 0.9
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
(standard_in) 1: syntax error
(standard_in) 1: syntax error
1263900 2527800 3791701 5055601 10111203 11375103
[E::sam_parse1] unrecognized type 2
[W::sam_read1] Parse error at line 29
[main_samview] truncated file.
[E::sam_parse1] unrecognized type 2
[W::sam_read1] Parse error at line 29
[main_samview] truncated file.
[E::sam_parse1] unrecognized type 2
[W::sam_read1] Parse error at line 29
[main_samview] truncated file.
[E::sam_parse1] unrecognized type 2
[W::sam_read1] Parse error at line 29
[main_samview] truncated file.
[E::sam_parse1] unrecognized type 2
[W::sam_read1] Parse error at line 29
[main_samview] truncated file.
[E::sam_parse1] unrecognized type 2
[W::sam_read1] Parse error at line 29
[main_samview] truncated file.

、、、
D2pime.bam
D2pime.name.sorted.0.1.coord.sorted.bam
D2pime.name.sorted.0.1.coord.sorted.bam.bai
D2pime.name.sorted.0.1.sam
D2pime.name.sorted.0.2.coord.sorted.bam
D2pime.name.sorted.0.2.coord.sorted.bam.bai
D2pime.name.sorted.0.2.sam
D2pime.name.sorted.0.3.coord.sorted.bam
D2pime.name.sorted.0.3.coord.sorted.bam.bai
D2pime.name.sorted.0.3.sam
D2pime.name.sorted.0.4.coord.sorted.bam
D2pime.name.sorted.0.4.coord.sorted.bam.bai
D2pime.name.sorted.0.4.sam
D2pime.name.sorted.0.8.coord.sorted.bam
D2pime.name.sorted.0.8.coord.sorted.bam.bai
D2pime.name.sorted.0.8.sam
D2pime.name.sorted.0.9.coord.sorted.bam
D2pime.name.sorted.0.9.coord.sorted.bam.bai
D2pime.name.sorted.0.9.sam
D2pime.name.sorted.oneliner.sam
D2pime.name.sorted.sam
D2pime.name.sorted.sam.header
downsampling.sh
、、、

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