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hello,When I run the following command, I get an error. I can't get the final bam file, am I missing some key steps?
sh downsampling.sh D2pime.bam .bam 0.1 0.2 0.3 0.4 0.8 0.9 [bam_sort_core] merging from 0 files and 8 in-memory blocks... (standard_in) 1: syntax error (standard_in) 1: syntax error 1263900 2527800 3791701 5055601 10111203 11375103 [E::sam_parse1] unrecognized type 2 [W::sam_read1] Parse error at line 29 [main_samview] truncated file. [E::sam_parse1] unrecognized type 2 [W::sam_read1] Parse error at line 29 [main_samview] truncated file. [E::sam_parse1] unrecognized type 2 [W::sam_read1] Parse error at line 29 [main_samview] truncated file. [E::sam_parse1] unrecognized type 2 [W::sam_read1] Parse error at line 29 [main_samview] truncated file. [E::sam_parse1] unrecognized type 2 [W::sam_read1] Parse error at line 29 [main_samview] truncated file. [E::sam_parse1] unrecognized type 2 [W::sam_read1] Parse error at line 29 [main_samview] truncated file.
、、、 D2pime.bam D2pime.name.sorted.0.1.coord.sorted.bam D2pime.name.sorted.0.1.coord.sorted.bam.bai D2pime.name.sorted.0.1.sam D2pime.name.sorted.0.2.coord.sorted.bam D2pime.name.sorted.0.2.coord.sorted.bam.bai D2pime.name.sorted.0.2.sam D2pime.name.sorted.0.3.coord.sorted.bam D2pime.name.sorted.0.3.coord.sorted.bam.bai D2pime.name.sorted.0.3.sam D2pime.name.sorted.0.4.coord.sorted.bam D2pime.name.sorted.0.4.coord.sorted.bam.bai D2pime.name.sorted.0.4.sam D2pime.name.sorted.0.8.coord.sorted.bam D2pime.name.sorted.0.8.coord.sorted.bam.bai D2pime.name.sorted.0.8.sam D2pime.name.sorted.0.9.coord.sorted.bam D2pime.name.sorted.0.9.coord.sorted.bam.bai D2pime.name.sorted.0.9.sam D2pime.name.sorted.oneliner.sam D2pime.name.sorted.sam D2pime.name.sorted.sam.header downsampling.sh 、、、
The text was updated successfully, but these errors were encountered:
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hello,When I run the following command, I get an error. I can't get the final bam file, am I missing some key steps?
sh downsampling.sh D2pime.bam .bam 0.1 0.2 0.3 0.4 0.8 0.9
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
(standard_in) 1: syntax error
(standard_in) 1: syntax error
1263900 2527800 3791701 5055601 10111203 11375103
[E::sam_parse1] unrecognized type 2
[W::sam_read1] Parse error at line 29
[main_samview] truncated file.
[E::sam_parse1] unrecognized type 2
[W::sam_read1] Parse error at line 29
[main_samview] truncated file.
[E::sam_parse1] unrecognized type 2
[W::sam_read1] Parse error at line 29
[main_samview] truncated file.
[E::sam_parse1] unrecognized type 2
[W::sam_read1] Parse error at line 29
[main_samview] truncated file.
[E::sam_parse1] unrecognized type 2
[W::sam_read1] Parse error at line 29
[main_samview] truncated file.
[E::sam_parse1] unrecognized type 2
[W::sam_read1] Parse error at line 29
[main_samview] truncated file.
、、、
D2pime.bam
D2pime.name.sorted.0.1.coord.sorted.bam
D2pime.name.sorted.0.1.coord.sorted.bam.bai
D2pime.name.sorted.0.1.sam
D2pime.name.sorted.0.2.coord.sorted.bam
D2pime.name.sorted.0.2.coord.sorted.bam.bai
D2pime.name.sorted.0.2.sam
D2pime.name.sorted.0.3.coord.sorted.bam
D2pime.name.sorted.0.3.coord.sorted.bam.bai
D2pime.name.sorted.0.3.sam
D2pime.name.sorted.0.4.coord.sorted.bam
D2pime.name.sorted.0.4.coord.sorted.bam.bai
D2pime.name.sorted.0.4.sam
D2pime.name.sorted.0.8.coord.sorted.bam
D2pime.name.sorted.0.8.coord.sorted.bam.bai
D2pime.name.sorted.0.8.sam
D2pime.name.sorted.0.9.coord.sorted.bam
D2pime.name.sorted.0.9.coord.sorted.bam.bai
D2pime.name.sorted.0.9.sam
D2pime.name.sorted.oneliner.sam
D2pime.name.sorted.sam
D2pime.name.sorted.sam.header
downsampling.sh
、、、
The text was updated successfully, but these errors were encountered: