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Output a visual representation of the graph after all spacers have been tested #1089

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susannasiebert opened this issue Apr 5, 2024 · 1 comment
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@susannasiebert
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This may aid in manually identifying which peptides could be removed or which peptides should be clipped or have more flanking amino acids added.

https://networkx.org/documentation/stable/reference/drawing.html has some notes about packages that would allow us to draw the directed graph created in pVACvector.

@susannasiebert
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I have looked into it and the resulting graph usually looks much too complicated to be useful especially once you go past 5 peptides to include in the vector. We should discuss if we still think that this would be useful.

@susannasiebert susannasiebert added this to the 5.1.0 milestone Dec 18, 2024
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