diff --git a/docs/conf.py b/docs/conf.py index ef57c09d9..28eaeeedb 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -69,7 +69,7 @@ # The short X.Y version. version = '1.0' # The full version, including alpha/beta/rc tags. -release = '1.0.1' +release = '1.0.2' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. diff --git a/docs/index.rst b/docs/index.rst index ec3ab10ee..4aaa88e2a 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -38,12 +38,25 @@ New in version |release| This is a hotfix release. It fixes the following issues: -- Additional data, like example data and VEP plugins were not included in the - package correctly so the commands to download these files would fail. This - has been corrected. -- Class II predictions would fail if the protein sequences used for binding - predictions in IEDB were shorter than 15 peptide sequences. This has been - fixed. +- The epitope length used for generating the peptide fasta when running with + multiple epitope lengths was incorrect. This would potentially result in including + fasta sequences that were shorter than the largest epitope length which + would cause an error during calls to IEDB. +- pVACseq would fail with a nondescript error message if the input VCF was not + annotated with VEP before running. A more descriptive error message has been + added. +- IEDB changed the format of class II IEDB alleles which would cause an error + when running with those alleles. pVACtools will now handle transposing the + affected alleles into the new format. +- The standalone binding filters had a few bugs that would result in syntax + errors during runtime. +- The indexes created for each fusion entry with pVACfuse had the potential to + not be unique which would result in parsing errors downstream. +- pVACseq had the potential to use the incorrect VEP allele for positions with + multiple alternate alleles which would result in the incorrect CSQ entry + getting used for some of those alternate alleles. +- pVACseq would throw an error if the chosen peptide sequence length exceeds + the wildtype protein sequence length of a transcript. Coming soon ----------- diff --git a/setup.py b/setup.py index 230985d11..c54e825db 100644 --- a/setup.py +++ b/setup.py @@ -45,7 +45,7 @@ setup( name="pvactools", - version="1.0.1", + version="1.0.2", packages=["tools", "tools.pvacfuse", "tools.pvacvector", "tools.pvacseq", "lib", "utils.pvacapi", "utils.pvacapi.controllers"], entry_points={ "console_scripts":[