diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html index b0e7082..f1f23b0 100644 --- a/CODE_OF_CONDUCT.html +++ b/CODE_OF_CONDUCT.html @@ -30,7 +30,7 @@

Contributor Covenant Code of Conduct

- Source: .github/CODE_OF_CONDUCT.md + Source: .github/CODE_OF_CONDUCT.md
diff --git a/LICENSE.html b/LICENSE.html index ed6bdd0..3b297ff 100644 --- a/LICENSE.html +++ b/LICENSE.html @@ -30,7 +30,7 @@

MIT License

- Source: LICENSE.md + Source: LICENSE.md
diff --git a/articles/rcromwell.html b/articles/rcromwell.html index 8671733..fe5e97f 100644 --- a/articles/rcromwell.html +++ b/articles/rcromwell.html @@ -54,7 +54,7 @@

Getting Started

- Source: vignettes/rcromwell.Rmd + Source: vignettes/rcromwell.Rmd
rcromwell.Rmd
diff --git a/authors.html b/authors.html index 9876811..d4379b8 100644 --- a/authors.html +++ b/authors.html @@ -51,7 +51,7 @@

Authors

Citation

-

Source: DESCRIPTION

+

Source: DESCRIPTION

Paguirigan A, Chamberlain S (2024). rcromwell: Convenience Tools for Managing WDL Workflows via Cromwell. diff --git a/news/index.html b/news/index.html index b9127c6..bc9020b 100644 --- a/news/index.html +++ b/news/index.html @@ -30,7 +30,7 @@

Changelog

- Source: NEWS.md + Source: NEWS.md
diff --git a/pkgdown.yml b/pkgdown.yml index 37fd4eb..44b8999 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -3,7 +3,7 @@ pkgdown: 2.1.0 pkgdown_sha: ~ articles: rcromwell: rcromwell.html -last_built: 2024-08-06T20:32Z +last_built: 2024-08-08T02:12Z urls: reference: http://getwilds.org/rcromwell/reference article: http://getwilds.org/rcromwell/articles diff --git a/reference/check_url.html b/reference/check_url.html index fff231d..6f63afb 100644 --- a/reference/check_url.html +++ b/reference/check_url.html @@ -30,7 +30,7 @@

Check a url

- Source: R/http.R + Source: R/http.R
check_url.Rd
diff --git a/reference/cromwell_abort.html b/reference/cromwell_abort.html index ad8930a..dcf8892 100644 --- a/reference/cromwell_abort.html +++ b/reference/cromwell_abort.html @@ -30,7 +30,7 @@

Abort a workflow job on Cromwell

- Source: R/cromwellAbort.R + Source: R/cromwellAbort.R
cromwell_abort.Rd
diff --git a/reference/cromwell_backends.html b/reference/cromwell_backends.html index d722d24..6f9ae90 100644 --- a/reference/cromwell_backends.html +++ b/reference/cromwell_backends.html @@ -30,7 +30,7 @@

Get the available backends of a Cromwell server

- Source: R/cromwellBackends.R + Source: R/cromwellBackends.R
cromwell_backends.Rd
diff --git a/reference/cromwell_cache.html b/reference/cromwell_cache.html index 876a2cd..9803715 100644 --- a/reference/cromwell_cache.html +++ b/reference/cromwell_cache.html @@ -30,7 +30,7 @@

Pull Cromwell Call Caching Data

- Source: R/cromwellCache.R + Source: R/cromwellCache.R
cromwell_cache.Rd
diff --git a/reference/cromwell_call.html b/reference/cromwell_call.html index 4b67358..b27cce9 100644 --- a/reference/cromwell_call.html +++ b/reference/cromwell_call.html @@ -30,7 +30,7 @@

Retrieve metadata for the calls made in a Cromwell workflow job

- Source: R/cromwellCall.R + Source: R/cromwellCall.R
cromwell_call.Rd
diff --git a/reference/cromwell_config.html b/reference/cromwell_config.html index a1997ab..716364f 100644 --- a/reference/cromwell_config.html +++ b/reference/cromwell_config.html @@ -30,7 +30,7 @@

Cromwell Configuration

- Source: R/settings.R + Source: R/settings.R
cromwell_config.Rd
diff --git a/reference/cromwell_failures.html b/reference/cromwell_failures.html index 03e41fa..96c6a6f 100644 --- a/reference/cromwell_failures.html +++ b/reference/cromwell_failures.html @@ -30,7 +30,7 @@

Pull metadata for the failed calls made in a Cromwell workflow job

- Source: R/cromwellFailures.R + Source: R/cromwellFailures.R
cromwell_failures.Rd
diff --git a/reference/cromwell_glob.html b/reference/cromwell_glob.html index 6fb953f..6cbacab 100644 --- a/reference/cromwell_glob.html +++ b/reference/cromwell_glob.html @@ -30,7 +30,7 @@

Pull a glob of metadata for a specific Cromwell workflow job

- Source: R/cromwellGlob.R + Source: R/cromwellGlob.R
cromwell_glob.Rd
diff --git a/reference/cromwell_jobs.html b/reference/cromwell_jobs.html index 3dc803d..0137787 100644 --- a/reference/cromwell_jobs.html +++ b/reference/cromwell_jobs.html @@ -30,7 +30,7 @@

Requests metadata about Cromwell workflow jobs during a time period specified

- Source: R/cromwellJobs.R + Source: R/cromwellJobs.R
cromwell_jobs.Rd
diff --git a/reference/cromwell_labels.html b/reference/cromwell_labels.html index 2209677..7e9d4a2 100644 --- a/reference/cromwell_labels.html +++ b/reference/cromwell_labels.html @@ -30,7 +30,7 @@

Cromwell labels for a workflow

- Source: R/labels.R + Source: R/labels.R
cromwell_labels.Rd
diff --git a/reference/cromwell_logs.html b/reference/cromwell_logs.html index c0bdf1d..278969b 100644 --- a/reference/cromwell_logs.html +++ b/reference/cromwell_logs.html @@ -30,7 +30,7 @@

Gets logs for a workflow in Cromwell

- Source: R/cromwellLogs.R + Source: R/cromwellLogs.R
cromwell_logs.Rd
diff --git a/reference/cromwell_outputs.html b/reference/cromwell_outputs.html index 37d356c..c9fdc8d 100644 --- a/reference/cromwell_outputs.html +++ b/reference/cromwell_outputs.html @@ -30,7 +30,7 @@

Gets outputs for a workflow in Cromwell

- Source: R/cromwellOutputs.R + Source: R/cromwellOutputs.R
cromwell_outputs.Rd
diff --git a/reference/cromwell_settings.html b/reference/cromwell_settings.html index 9e8d9a0..b367936 100644 --- a/reference/cromwell_settings.html +++ b/reference/cromwell_settings.html @@ -30,7 +30,7 @@

Cromwell Settings

- Source: R/settings.R + Source: R/settings.R
cromwell_settings.Rd
diff --git a/reference/cromwell_submit_batch.html b/reference/cromwell_submit_batch.html index ce0a70e..fb62b37 100644 --- a/reference/cromwell_submit_batch.html +++ b/reference/cromwell_submit_batch.html @@ -32,7 +32,7 @@

Submit a workflow job to Cromwell

- Source: R/cromwellSubmitBatch.R + Source: R/cromwellSubmitBatch.R
cromwell_submit_batch.Rd
diff --git a/reference/cromwell_timing.html b/reference/cromwell_timing.html index 20fc270..13a67ba 100644 --- a/reference/cromwell_timing.html +++ b/reference/cromwell_timing.html @@ -30,7 +30,7 @@

Get a timing diagram for a Cromwell workflow

- Source: R/cromwellTiming.R + Source: R/cromwellTiming.R
cromwell_timing.Rd
diff --git a/reference/cromwell_validate.html b/reference/cromwell_validate.html index 06ce305..cd0bb04 100644 --- a/reference/cromwell_validate.html +++ b/reference/cromwell_validate.html @@ -30,7 +30,7 @@

Validates a workflow for submission

- Source: R/cromwellValidate.R + Source: R/cromwellValidate.R
cromwell_validate.Rd
diff --git a/reference/cromwell_version.html b/reference/cromwell_version.html index 73cc310..326df11 100644 --- a/reference/cromwell_version.html +++ b/reference/cromwell_version.html @@ -30,7 +30,7 @@

Get the version of a Cromwell server

- Source: R/cromwellVersion.R + Source: R/cromwellVersion.R
cromwell_version.Rd
diff --git a/reference/cromwell_workflow.html b/reference/cromwell_workflow.html index 2fdd6bd..8713f25 100644 --- a/reference/cromwell_workflow.html +++ b/reference/cromwell_workflow.html @@ -32,7 +32,7 @@

Pull metadata for a specific Cromwell workflow job

- Source: R/cromwellWorkflow.R + Source: R/cromwellWorkflow.R
cromwell_workflow.Rd
diff --git a/reference/cw_url.html b/reference/cw_url.html index d3cd6a7..6939fd5 100644 --- a/reference/cw_url.html +++ b/reference/cw_url.html @@ -30,7 +30,7 @@

Look for Cromwell URL as the env var CROMWELLURL

- Source: R/http.R + Source: R/http.R
cw_url.Rd
diff --git a/reference/rcromwell-package.html b/reference/rcromwell-package.html index 2a051d9..aac61e7 100644 --- a/reference/rcromwell-package.html +++ b/reference/rcromwell-package.html @@ -30,7 +30,7 @@

rcromwell: Convenience Tools for Managing WDL Workflows via Cromwell

- Source: R/rcromwell-package.R + Source: R/rcromwell-package.R
rcromwell-package.Rd
diff --git a/reference/try_auth_header.html b/reference/try_auth_header.html index 6ff00a7..6acc325 100644 --- a/reference/try_auth_header.html +++ b/reference/try_auth_header.html @@ -30,7 +30,7 @@

Add Authorization header

- Source: R/http.R + Source: R/http.R
try_auth_header.Rd
diff --git a/reference/workflow_inputs.html b/reference/workflow_inputs.html index 43438b1..e6da264 100644 --- a/reference/workflow_inputs.html +++ b/reference/workflow_inputs.html @@ -30,7 +30,7 @@

Pull the workflow inputs provided for a Cromwell workflow job

- Source: R/cromUtils.R + Source: R/cromUtils.R
workflow_inputs.Rd
diff --git a/reference/workflow_options.html b/reference/workflow_options.html index 5fe2d39..84d3e9f 100644 --- a/reference/workflow_options.html +++ b/reference/workflow_options.html @@ -30,7 +30,7 @@

Pull the workflow options provided for a Cromwell workflow job

- Source: R/cromUtils.R + Source: R/cromUtils.R
workflow_options.Rd