From 52fe5accd4701e6e620000e0141e67fcccf6c6ae Mon Sep 17 00:00:00 2001 From: Scott Chamberlain Date: Mon, 8 Jan 2024 15:51:58 -0800 Subject: [PATCH] fixes for readme: remove diy-cromwell reference, gizmo->localhost, pak for pkg install --- README.Rmd | 13 ++++--------- README.md | 13 ++++--------- 2 files changed, 8 insertions(+), 18 deletions(-) diff --git a/README.Rmd b/README.Rmd index b7b2ea8..232c8f5 100644 --- a/README.Rmd +++ b/README.Rmd @@ -25,21 +25,16 @@ Convenience Tools for Managing WDL Workflows via Cromwell You can install the development version of `rcromwell` from [GitHub](https://github.com/) with: ```r -# install.packages("remotes") -remotes::install_github("getwilds/rcromwell") +# install.packages("pak") +pak::pak("getwilds/rcromwell") ``` Install a specific release version (in this case v1.0) by: ```r -remotes::install_github('getwilds/rcromwell@v1.0') +pak::pak('getwilds/rcromwell@v1.0') ``` -## Set up your Cromwell Server - -Use instructions over in the [diy-cromwell-server repo](https://github.com/FredHutch/diy-cromwell-server) to get the configuration files needed and some testing workflows. - - ## Example workflow process Set your Cromwell URL @@ -47,7 +42,7 @@ Set your Cromwell URL ```r library(rcromwell) library(dplyr) -cromwell_config("http://gizmoXXX:20202") +cromwell_config("http://localhost:20202") ``` ### Validate your workflow formatting diff --git a/README.md b/README.md index 2e84771..69dcfee 100644 --- a/README.md +++ b/README.md @@ -17,21 +17,16 @@ Convenience Tools for Managing WDL Workflows via Cromwell You can install the development version of `rcromwell` from [GitHub](https://github.com/) with: ```r -# install.packages("remotes") -remotes::install_github("getwilds/rcromwell") +# install.packages("pak") +pak::pak("getwilds/rcromwell") ``` Install a specific release version (in this case v1.0) by: ```r -remotes::install_github('getwilds/rcromwell@v1.0') +pak::pak('getwilds/rcromwell@v1.0') ``` -## Set up your Cromwell Server - -Use instructions over in the [diy-cromwell-server repo](https://github.com/FredHutch/diy-cromwell-server) to get the configuration files needed and some testing workflows. - - ## Example workflow process Set your Cromwell URL @@ -39,7 +34,7 @@ Set your Cromwell URL ```r library(rcromwell) library(dplyr) -cromwell_config("http://gizmoXXX:20202") +cromwell_config("http://localhost:20202") ``` ### Validate your workflow formatting