Revise terms containing 'in another organism'

[pgaudet]

For the interspecies interaction terms, we want to only keep two branches: 'symbiont-mediated xxx' and 'venom-mediated xxx'.

The first task is to review all terms containing 'in another organism' , and hence not specifying whether the term describes a symbiont or the action of a venom component.

The list of terms is:

• GO:0035807 | induction of blood coagulation in another organism
• GO:0035894 | induction of platelet aggregation in another organism
• GO:0044552 | vasodilation in another organism >> obsoleted
• GO:0044541 | zymogen activation in another organism >> obsoleted
• GO:0044503 | modulation of G protein-coupled receptor activity in another organism
• GO:0044737 | modulation of acid-sensing ion channel in another organism >> obsoleted
• GO:0044554 | modulation of heart rate in another organism >> obsoleted
• GO:0044517 | modulation of vasoactive intestinal polypeptide receptor activity in another organism >> obsoleted
• GO:0044495 | modulation of blood pressure in another organism >> obsoleted
• GO:0044505 | positive regulation of G protein-coupled receptor activity in another organism >> obsoleted
• GO:0044532 | modulation of apoptotic process in another organism
• GO:0044504 | modulation of receptor activity in another organism
• GO:0044738 | negative regulation of acid-sensing ion channel in another organism >> obsoleted
• GO:0044739 | positive regulation of acid-sensing ion channel in another organism >> obsoleted
• GO:0044618 | modulation of relaxation of uterine smooth muscle in another organism >> obsoleted
• GO:0044553 | modulation of biological quality in another organism >> obsoleted
• GO:0035899 | suppression of blood coagulation in another organism
• GO:0044555 | negative regulation of heart rate in another organism >> obsoleted
• GO:0035806 | perturbation of blood coagulation in another organism >> obsoleted
• GO:0044561 | modulation of ion channel activity in another organism >> obsoleted
• GO:0044616 | modulation of relaxation of muscle in another organism >> changed label to envenomation resulting in paralysis in another organism
• GO:0035893 | suppression of platelet aggregation in another organism
• GO:0035892 | perturbation of platelet aggregation in another organism >> obsoleted
• GO:0035895 | modulation of mast cell degranulation in another organism >> obsoleted
• GO:0044496 | negative regulation of blood pressure in another organism
• GO:0044497 | positive regulation of blood pressure in another organism >> obsoleted
• GO:0044465 | modulation of sensory perception of pain in another organism >> obsoleted
• GO:0035916 | modulation of calcium channel activity in another organism >> obsoleted
• GO:0044363 | modulation of potassium channel activity in another organism >> obsoleted
• GO:0044533 | positive regulation of apoptotic process in another organism >> obsoleted
• GO:0044507 | positive regulation of receptor activity in another organism >> obsoleted
• GO:0044619 | positive regulation of relaxation of uterine smooth muscle in another organism >> changed label to envenomation resulting in uterine smooth muscle relaxation in another organism
• GO:0044617 | modulation of relaxation of smooth muscle in another organism
• GO:0044486 | modulation of transmission of nerve impulse in another organism
• GO:0035896 | positive regulation of mast cell degranulation in another organism
• GO:0044740 | negative regulation of sensory perception of pain in another organism
• GO:0035917 | negative regulation of calcium channel activity in another organism
• GO:0044488 | modulation of voltage-gated sodium channel activity in another organism
• GO:0044360 | modulation of voltage-gated potassium channel activity in another organism
• GO:0044506 | modulation of glucagon-like peptide receptor 1 activity in another organism
• GO:0044489 | negative regulation of voltage-gated sodium channel activity in another organism
• GO:0044490 | positive regulation of voltage-gated sodium channel activity in another organism
• GO:0035918 | negative regulation of voltage-gated calcium channel activity in another organism
• GO:0044361 | negative regulation of voltage-gated potassium channel activity in another organism
• GO:0035919 | negative regulation of low voltage-gated calcium channel activity in another organism
• GO:0035920 | negative regulation of high voltage-gated calcium channel activity in another organism

Annotation review is here: https://docs.google.com/spreadsheets/d/1eloD9IPdvdazQGdYiBifsUrG_Y-RTUQtTNlo2K-7bKY/edit?gid=0#gid=0

[pgaudet]

Plan:

• Obsolete terms that are not used & propose alternatives if possible
• Obsolete terms that have been used but that are also annotated to a venom or symbiont term
• Decision for other terms will be described on a case-by-case basis as they are being reviewed.

[pgaudet]

GO:0044552 vasodilation in another organism:

• change label to symbiont-mediated vasodilation in host
• change defintion to A process in which a symbiont causes vasodilation of blood vessels in its host organism, usually causing a reduction in blood pressure. The host is defined as the larger of the organisms involved in a symbiotic interaction.
• change reference to PMID:15637157
• change parents to symbiont-mediated perturbation of host process
  +relationship: positively_regulates_in_another_organism GO:0042311 ! vasodilation

[pgaudet]

• READY for obsoletion:
• modulation of apoptotic process in another organism
• negative regulation of blood pressure in another organism

Annotations removed