Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

add instructions and link to code to do NORDIC preprocessing #32

Open
garikoitz opened this issue Apr 18, 2023 · 0 comments
Open

add instructions and link to code to do NORDIC preprocessing #32

garikoitz opened this issue Apr 18, 2023 · 0 comments
Labels
for brainhackdonostia 2023 The issues are open for brainhack donostia 2023

Comments

@garikoitz
Copy link
Owner

garikoitz commented Apr 18, 2023 •
edited by yongninglei
Loading

NORDIC refers to NOise reduction with DIstribution Corrected (NORDIC) PCA. For more info, you can check their paper and GitHub. We want to make launchcontainer able to launch the NORDIC preprocessing pipeline and generate the tSNR comparison maps.

Right now we have Matlab source code that is able to launch.
The idea is to launch it using python,

  1. read the needed info from config.ymal
  2. parse the info to Matlab function NIfiti_Raw
  3. launch the Matlab function on cluster

Level of development 30%
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
for brainhackdonostia 2023 The issues are open for brainhack donostia 2023
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@garikoitz @yongninglei