CEMiTool not working if you add optional files

[Mennayousef]

Hello, I opened a previous issue #6246 because the CEMiTool was missing set_bata parameter option, the issue was resolved and the parameter was added, now the tool is partially working, if you add an input expression matrix > It gives 2 outputs (Modules and profile plots).

However, the rest of the outputs (Gene set enrichment analysis, Over representation analysis, and Interaction network) requires optional input files. Unfortunately if we supply those optional files, the tool gives again this error

Here is a link to my history https://usegalaxy.eu/u/mennagamal/h/cemitool-beta-parameter

I tried to reproduce the analysis in R and it is fully functioning. Here are screenshots from running the tool in R