diff --git a/README.md b/README.md index 71714c5..e6b6349 100644 --- a/README.md +++ b/README.md @@ -42,6 +42,8 @@ Install Python3.9: apt-get update apt-get install software-properties-common add-apt-repository ppa:deadsnakes/ppa +apt-get -y update; DEBIAN_FRONTEND=noninteractive apt-get -y install \ + curl ffmpeg libsm6 libxext6 libpangocairo-1.0-0 dcmtk xvfb libjemalloc2 && rm -rf /var/lib/apt/lists/* # Install py39 from deadsnakes repository apt-get install python3.9 # Install pip from standard ubuntu packages @@ -52,7 +54,7 @@ Install BOA & RadTA: ```sh # Get the RadTA software from GitHub -git clone --submodules https://TODO +git clone --recurse-submodules https://TODO cd radta/ # Install all dependencies via pip python3.9 -m pip install -r requirements.txt diff --git a/requirements.txt b/requirements.txt index dc437a0..6c9a7e6 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,7 +1,110 @@ +amqp==5.1.1 ; python_version >= "3.8" and python_version < "3.11" +argparse==1.4.0 ; python_version >= "3.8" and python_version < "3.11" +attrs==23.1.0 ; python_version >= "3.8" and python_version < "3.11" +backports-zoneinfo[tzdata]==0.2.1 ; python_version >= "3.8" and python_version < "3.9" +batchgenerators==0.21 ; python_version >= "3.8" and python_version < "3.11" +billiard==3.6.4.0 ; python_version >= "3.8" and python_version < "3.11" +boa-contrast==0.1.4 ; python_version >= "3.8" and python_version < "3.11" +cairocffi==1.6.1 ; python_version >= "3.8" and python_version < "3.11" +cairosvg==2.7.1 ; python_version >= "3.8" and python_version < "3.11" +celery==5.2.7 ; python_version >= "3.8" and python_version < "3.11" +certifi==2023.7.22 ; python_version >= "3.8" and python_version < "3.11" +cffi==1.15.1 ; python_version >= "3.8" and python_version < "3.11" +charset-normalizer==3.2.0 ; python_version >= "3.8" and python_version < "3.11" +click-didyoumean==0.3.0 ; python_version >= "3.8" and python_version < "3.11" +click-plugins==1.1.1 ; python_version >= "3.8" and python_version < "3.11" +click-repl==0.3.0 ; python_version >= "3.8" and python_version < "3.11" +click==8.1.6 ; python_version >= "3.8" and python_version < "3.11" +colorama==0.4.6 ; python_version >= "3.8" and python_version < "3.11" and platform_system == "Windows" +connected-components-3d==3.12.1 ; python_version >= "3.8" and python_version < "3.11" +contourpy==1.1.0 ; python_version >= "3.8" and python_version < "3.11" +cryptography==41.0.3 ; python_version >= "3.8" and python_version < "3.11" +cssselect2==0.7.0 ; python_version >= "3.8" and python_version < "3.11" +cycler==0.11.0 ; python_version >= "3.8" and python_version < "3.11" +dataclasses-json==0.5.14 ; python_version >= "3.8" and python_version < "3.11" +defusedxml==0.7.1 ; python_version >= "3.8" and python_version < "3.11" +dicomweb-client==0.59.1 ; python_version >= "3.8" and python_version < "3.11" +dill==0.3.7 ; python_version >= "3.8" and python_version < "3.11" +fonttools==4.43.0 ; python_version >= "3.8" and python_version < "3.11" +fury==0.8.0 ; python_version >= "3.8" and python_version < "3.11" +future==0.18.3 ; python_version >= "3.8" and python_version < "3.11" +grpcio==1.56.2 ; python_version >= "3.8" and python_version < "3.11" +html5lib==1.1 ; python_version >= "3.8" and python_version < "3.11" +idna==3.4 ; python_version >= "3.8" and python_version < "3.11" +imageio==2.31.1 ; python_version >= "3.8" and python_version < "3.11" +importlib-resources==6.0.1 ; python_version >= "3.8" and python_version < "3.10" +jinja2==3.1.3 ; python_version >= "3.8" and python_version < "3.11" +joblib==1.3.2 ; python_version >= "3.8" and python_version < "3.11" +jsonschema==3.2.0 ; python_version >= "3.8" and python_version < "3.11" +kaleido==0.2.1 ; python_version >= "3.8" and python_version < "3.11" +kiwisolver==1.4.4 ; python_version >= "3.8" and python_version < "3.11" +kombu==5.3.1 ; python_version >= "3.8" and python_version < "3.11" +linecache2==1.0.0 ; python_version >= "3.8" and python_version < "3.11" +markupsafe==2.1.3 ; python_version >= "3.8" and python_version < "3.11" +marshmallow==3.20.1 ; python_version >= "3.8" and python_version < "3.11" +matplotlib==3.7.2 ; python_version >= "3.8" and python_version < "3.11" +medpy==0.4.0 ; python_version >= "3.8" and python_version < "3.11" +multiprocess==0.70.15 ; python_version >= "3.8" and python_version < "3.11" +mypy-extensions==0.4.4 ; python_version >= "3.8" and python_version < "3.11" +networkx==3.1 ; python_version >= "3.8" and python_version < "3.11" +nibabel==5.1.0 ; python_version >= "3.8" and python_version < "3.11" +numpy==1.24.4 ; python_version < "3.11" and python_version >= "3.8" +opencv-python==4.8.0.74 ; python_version >= "3.8" and python_version < "3.11" +p-tqdm==1.4.0 ; python_version >= "3.8" and python_version < "3.11" +packaging==23.1 ; python_version >= "3.8" and python_version < "3.11" +pandas==1.5.3 ; python_version >= "3.8" and python_version < "3.11" +pathos==0.3.1 ; python_version >= "3.8" and python_version < "3.11" +pillow==10.2.0 ; python_version >= "3.8" and python_version < "3.11" +plotly==5.15.0 ; python_version >= "3.8" and python_version < "3.11" +pox==0.3.3 ; python_version >= "3.8" and python_version < "3.11" +ppft==1.7.6.7 ; python_version >= "3.8" and python_version < "3.11" +prompt-toolkit==3.0.39 ; python_version >= "3.8" and python_version < "3.11" +protobuf==3.20.3 ; python_version >= "3.8" and python_version < "3.11" +psutil==5.9.5 ; python_version >= "3.8" and python_version < "3.11" +psycopg2-binary==2.9.9 ; python_version >= "3.8" and python_version < "3.11" +pycparser==2.21 ; python_version >= "3.8" and python_version < "3.11" +pydicom-seg==0.4.1 ; python_version >= "3.8" and python_version < "3.11" +pydicom==2.4.2 ; python_version >= "3.8" and python_version < "3.11" +pyparsing==3.0.9 ; python_version >= "3.8" and python_version < "3.11" +pyphen==0.14.0 ; python_version >= "3.8" and python_version < "3.11" +pyrsistent==0.19.3 ; python_version >= "3.8" and python_version < "3.11" +pyspnego==0.9.1 ; python_version >= "3.8" and python_version < "3.11" +python-dateutil==2.8.2 ; python_version >= "3.8" and python_version < "3.11" +python-rapidjson==1.10 ; python_version >= "3.8" and python_version < "3.11" +pytz==2023.3 ; python_version >= "3.8" and python_version < "3.11" +pywavelets==1.4.1 ; python_version >= "3.8" and python_version < "3.11" +requests==2.31.0 ; python_version >= "3.8" and python_version < "3.11" +retrying==1.3.4 ; python_version >= "3.8" and python_version < "3.11" +scikit-image==0.19.3 ; python_version >= "3.8" and python_version < "3.11" +scikit-learn==1.3.0 ; python_version >= "3.8" and python_version < "3.11" +scipy==1.10.1 ; python_version >= "3.8" and python_version < "3.11" +setuptools==68.0.0 ; python_version >= "3.8" and python_version < "3.11" +simpleitk==2.2.1 ; python_version >= "3.8" and python_version < "3.11" +six==1.16.0 ; python_version >= "3.8" and python_version < "3.11" +smbprotocol==1.10.1 ; python_version >= "3.8" and python_version < "3.11" +tenacity==8.2.2 ; python_version >= "3.8" and python_version < "3.11" +threadpoolctl==3.2.0 ; python_version >= "3.8" and python_version < "3.11" +tifffile==2023.7.10 ; python_version >= "3.8" and python_version < "3.11" +tinycss2==1.2.1 ; python_version >= "3.8" and python_version < "3.11" +tqdm==4.65.2 ; python_version >= "3.8" and python_version < "3.11" +traceback2==1.4.0 ; python_version >= "3.8" and python_version < "3.11" +tritonclient[grpc]==2.36.0 ; python_version >= "3.8" and python_version < "3.11" +typing-extensions==4.7.1 ; python_version >= "3.8" and python_version < "3.11" +typing-inspect==0.9.0 ; python_version >= "3.8" and python_version < "3.11" +tzdata==2023.3 ; python_version >= "3.8" and python_version < "3.9" +unidecode==1.3.6 ; python_version >= "3.8" and python_version < "3.11" +unittest2==1.1.0 ; python_version >= "3.8" and python_version < "3.11" +urllib3==2.0.7 ; python_version >= "3.8" and python_version < "3.11" +vine==5.0.0 ; python_version >= "3.8" and python_version < "3.11" +vtk==9.2.6 ; python_version >= "3.8" and python_version < "3.11" +wcwidth==0.2.6 ; python_version >= "3.8" and python_version < "3.11" +weasyprint==52.5 ; python_version >= "3.8" and python_version < "3.11" +webencodings==0.5.1 ; python_version >= "3.8" and python_version < "3.11" +xlsxwriter==3.1.2 ; python_version >= "3.8" and python_version < "3.11" +xvfbwrapper==0.2.9 ; python_version >= "3.8" and python_version < "3.11" +zipp==3.16.2 ; python_version >= "3.8" and python_version < "3.10" openpyxl torch pyradiomics -tqdm plotnine -scipy patchworklib \ No newline at end of file