From 9d5578631eeb294b4af0f2357c60e5934d31861f Mon Sep 17 00:00:00 2001 From: Benedikt Fuchs Date: Mon, 31 Jul 2023 12:37:56 +0200 Subject: [PATCH 1/6] fix ruff coding --- flair/embeddings/image.py | 2 +- flair/training_utils.py | 7 +------ pyproject.toml | 3 +++ 3 files changed, 5 insertions(+), 7 deletions(-) diff --git a/flair/embeddings/image.py b/flair/embeddings/image.py index 6a14a0e00..faf3a78b1 100644 --- a/flair/embeddings/image.py +++ b/flair/embeddings/image.py @@ -73,7 +73,7 @@ class PrecomputedImageEmbeddings(ImageEmbeddings): def __init__(self, url2tensor_dict, name) -> None: self.url2tensor_dict = url2tensor_dict self.name = name - self.__embedding_length = len(list(self.url2tensor_dict.values())[0]) + self.__embedding_length = len(next(iter(self.url2tensor_dict.values()))) self.static_embeddings = True super().__init__() diff --git a/flair/training_utils.py b/flair/training_utils.py index 51894386d..f36f95a91 100644 --- a/flair/training_utils.py +++ b/flair/training_utils.py @@ -66,12 +66,7 @@ def micro_avg_f_score(self): return self.mean_squared_error() def to_tsv(self): - return "{}\t{}\t{}\t{}".format( - self.mean_squared_error(), - self.mean_absolute_error(), - self.pearsonr(), - self.spearmanr(), - ) + return f"{self.mean_squared_error()}\t{self.mean_absolute_error()}\t{self.pearsonr()}\t{self.spearmanr()}" @staticmethod def tsv_header(prefix=None): diff --git a/pyproject.toml b/pyproject.toml index 635eee77f..12e62fdd8 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -85,6 +85,7 @@ ignore = [ "D105", "D107", "E501", # Ignore line too long + "RUF012", ] unfixable = [ @@ -96,6 +97,8 @@ unfixable = [ [tool.ruff.per-file-ignores] "flair/embeddings/legacy.py" = ["D205"] +"scripts/*" = ["INP001"] # no need for __ini__ for scripts +"flair/datasets/*" = ["D417"] # need to fix datasets in a unified way later. [tool.ruff.pydocstyle] convention = "google" From 4478cf18e2ac0d8c035f96f2edbba5d21420a476 Mon Sep 17 00:00:00 2001 From: Benedikt Fuchs Date: Mon, 31 Jul 2023 14:07:43 +0200 Subject: [PATCH 2/6] fix transformer embeddings created with <4.31.0 cannot be loaded with transformer version >=4.31.0 --- flair/embeddings/transformer.py | 229 +++++++++++++++++--------------- requirements.txt | 3 +- 2 files changed, 123 insertions(+), 109 deletions(-) diff --git a/flair/embeddings/transformer.py b/flair/embeddings/transformer.py index 3a92dab66..fb82c0bf7 100644 --- a/flair/embeddings/transformer.py +++ b/flair/embeddings/transformer.py @@ -8,9 +8,11 @@ from abc import abstractmethod from io import BytesIO from pathlib import Path -from typing import Any, Dict, List, Optional, Tuple, Type, Union, cast +from semver import Version +from typing import Any, Dict, List, Optional, Tuple, Type, Union, cast, Mapping import torch +import transformers from torch.jit import ScriptModule from transformers import ( CONFIG_MAPPING, @@ -68,11 +70,11 @@ def truncate_hidden_states(hidden_states: torch.Tensor, input_ids: torch.Tensor) @torch.jit.script_if_tracing def combine_strided_tensors( - hidden_states: torch.Tensor, - overflow_to_sample_mapping: torch.Tensor, - half_stride: int, - max_length: int, - default_value: int, + hidden_states: torch.Tensor, + overflow_to_sample_mapping: torch.Tensor, + half_stride: int, + max_length: int, + default_value: int, ) -> torch.Tensor: _, counts = torch.unique(overflow_to_sample_mapping, sorted=True, return_counts=True) sentence_count = int(overflow_to_sample_mapping.max().item() + 1) @@ -92,9 +94,9 @@ def combine_strided_tensors( selected_sentences = hidden_states[overflow_to_sample_mapping == sentence_id] if selected_sentences.size(0) > 1: start_part = selected_sentences[0, : half_stride + 1] - mid_part = selected_sentences[:, half_stride + 1 : max_length - 1 - half_stride] + mid_part = selected_sentences[:, half_stride + 1: max_length - 1 - half_stride] mid_part = torch.reshape(mid_part, (mid_part.shape[0] * mid_part.shape[1],) + mid_part.shape[2:]) - end_part = selected_sentences[selected_sentences.shape[0] - 1, max_length - half_stride - 1 :] + end_part = selected_sentences[selected_sentences.shape[0] - 1, max_length - half_stride - 1:] sentence_hidden_state = torch.cat((start_part, mid_part, end_part), dim=0) sentence_hidden_states[sentence_id, : sentence_hidden_state.shape[0]] = torch.cat( (start_part, mid_part, end_part), dim=0 @@ -107,11 +109,11 @@ def combine_strided_tensors( @torch.jit.script_if_tracing def fill_masked_elements( - all_token_embeddings: torch.Tensor, - sentence_hidden_states: torch.Tensor, - mask: torch.Tensor, - word_ids: torch.Tensor, - lengths: torch.LongTensor, + all_token_embeddings: torch.Tensor, + sentence_hidden_states: torch.Tensor, + mask: torch.Tensor, + word_ids: torch.Tensor, + lengths: torch.LongTensor, ): for i in torch.arange(int(all_token_embeddings.shape[0])): r = insert_missing_embeddings(sentence_hidden_states[i][mask[i] & (word_ids[i] >= 0)], word_ids[i], lengths[i]) @@ -121,7 +123,7 @@ def fill_masked_elements( @torch.jit.script_if_tracing def insert_missing_embeddings( - token_embeddings: torch.Tensor, word_id: torch.Tensor, length: torch.LongTensor + token_embeddings: torch.Tensor, word_id: torch.Tensor, length: torch.LongTensor ) -> torch.Tensor: # in some cases we need to insert zero vectors for tokens without embedding. if token_embeddings.shape[0] == 0: @@ -164,10 +166,10 @@ def insert_missing_embeddings( @torch.jit.script_if_tracing def fill_mean_token_embeddings( - all_token_embeddings: torch.Tensor, - sentence_hidden_states: torch.Tensor, - word_ids: torch.Tensor, - token_lengths: torch.Tensor, + all_token_embeddings: torch.Tensor, + sentence_hidden_states: torch.Tensor, + word_ids: torch.Tensor, + token_lengths: torch.Tensor, ): for i in torch.arange(all_token_embeddings.shape[0]): for _id in torch.arange(token_lengths[i]): # type: ignore[call-overload] @@ -194,7 +196,7 @@ def document_max_pooling(sentence_hidden_states: torch.Tensor, sentence_lengths: def _legacy_reconstruct_word_ids( - embedding: "TransformerBaseEmbeddings", flair_tokens: List[List[str]] + embedding: "TransformerBaseEmbeddings", flair_tokens: List[List[str]] ) -> List[List[Optional[int]]]: word_ids_list = [] max_len = 0 @@ -305,25 +307,25 @@ class TransformerBaseEmbeddings(Embeddings[Sentence]): """ def __init__( - self, - name: str, - tokenizer: PreTrainedTokenizer, - embedding_length: int, - context_length: int, - context_dropout: float, - respect_document_boundaries: bool, - stride: int, - allow_long_sentences: bool, - fine_tune: bool, - truncate: bool, - use_lang_emb: bool, - is_document_embedding: bool = False, - is_token_embedding: bool = False, - force_device: Optional[torch.device] = None, - force_max_length: bool = False, - feature_extractor: Optional[FeatureExtractionMixin] = None, - needs_manual_ocr: Optional[bool] = None, - use_context_separator: bool = True, + self, + name: str, + tokenizer: PreTrainedTokenizer, + embedding_length: int, + context_length: int, + context_dropout: float, + respect_document_boundaries: bool, + stride: int, + allow_long_sentences: bool, + fine_tune: bool, + truncate: bool, + use_lang_emb: bool, + is_document_embedding: bool = False, + is_token_embedding: bool = False, + force_device: Optional[torch.device] = None, + force_max_length: bool = False, + feature_extractor: Optional[FeatureExtractionMixin] = None, + needs_manual_ocr: Optional[bool] = None, + use_context_separator: bool = True, ) -> None: self.name = name super().__init__() @@ -471,32 +473,32 @@ def prepare_tensors(self, sentences: List[Sentence], device: Optional[torch.devi # random check some tokens to save performance. if (self.needs_manual_ocr or self.tokenizer_needs_ocr_boxes) and not all( - [ - flair_tokens[0][0].has_metadata("bbox"), - flair_tokens[0][-1].has_metadata("bbox"), - flair_tokens[-1][0].has_metadata("bbox"), - flair_tokens[-1][-1].has_metadata("bbox"), - ] + [ + flair_tokens[0][0].has_metadata("bbox"), + flair_tokens[0][-1].has_metadata("bbox"), + flair_tokens[-1][0].has_metadata("bbox"), + flair_tokens[-1][-1].has_metadata("bbox"), + ] ): raise ValueError(f"The embedding '{self.name}' requires the ocr 'bbox' set as metadata on all tokens.") if self.feature_extractor is not None and not all( - [ - sentences[0].has_metadata("image"), - sentences[-1].has_metadata("image"), - ] + [ + sentences[0].has_metadata("image"), + sentences[-1].has_metadata("image"), + ] ): raise ValueError(f"The embedding '{self.name}' requires the 'image' set as metadata for all sentences.") return self.__build_transformer_model_inputs(sentences, offsets, lengths, flair_tokens, device) def __build_transformer_model_inputs( - self, - sentences: List[Sentence], - offsets: List[int], - sentence_lengths: List[int], - flair_tokens: List[List[Token]], - device: torch.device, + self, + sentences: List[Sentence], + offsets: List[int], + sentence_lengths: List[int], + flair_tokens: List[List[Token]], + device: torch.device, ): tokenizer_kwargs: Dict[str, Any] = {} if self.tokenizer_needs_ocr_boxes: @@ -557,7 +559,7 @@ def __build_transformer_model_inputs( sentence_idx = 0 for sentence, part_length in zip(sentences, sentence_part_lengths): lang_id = lang2id.get(sentence.get_language_code(), 0) - model_kwargs["langs"][sentence_idx : sentence_idx + part_length] = lang_id + model_kwargs["langs"][sentence_idx: sentence_idx + part_length] = lang_id sentence_idx += part_length if "bbox" in batch_encoding: @@ -799,12 +801,12 @@ def collect_dynamic_axes(cls, embedding: "TransformerEmbeddings", tensors): @classmethod def export_from_embedding( - cls, - path: Union[str, Path], - embedding: "TransformerEmbeddings", - example_sentences: List[Sentence], - opset_version: int = 14, - providers: Optional[List] = None, + cls, + path: Union[str, Path], + embedding: "TransformerEmbeddings", + example_sentences: List[Sentence], + opset_version: int = 14, + providers: Optional[List] = None, ): path = str(path) example_tensors = embedding.prepare_tensors(example_sentences) @@ -897,7 +899,7 @@ def create_from_embedding(cls, module: ScriptModule, embedding: "TransformerEmbe @classmethod def parameter_to_list( - cls, embedding: "TransformerEmbeddings", wrapper: torch.nn.Module, sentences: List[Sentence] + cls, embedding: "TransformerEmbeddings", wrapper: torch.nn.Module, sentences: List[Sentence] ) -> Tuple[List[str], List[torch.Tensor]]: tensors = embedding.prepare_tensors(sentences) param_names = list(inspect.signature(wrapper.forward).parameters.keys()) @@ -910,8 +912,8 @@ def parameter_to_list( @register_embeddings class TransformerJitWordEmbeddings(TokenEmbeddings, TransformerJitEmbeddings): def __init__( - self, - **kwargs, + self, + **kwargs, ) -> None: TransformerJitEmbeddings.__init__(self, **kwargs) @@ -919,8 +921,8 @@ def __init__( @register_embeddings class TransformerJitDocumentEmbeddings(DocumentEmbeddings, TransformerJitEmbeddings): def __init__( - self, - **kwargs, + self, + **kwargs, ) -> None: TransformerJitEmbeddings.__init__(self, **kwargs) @@ -928,8 +930,8 @@ def __init__( @register_embeddings class TransformerOnnxWordEmbeddings(TokenEmbeddings, TransformerOnnxEmbeddings): def __init__( - self, - **kwargs, + self, + **kwargs, ) -> None: TransformerOnnxEmbeddings.__init__(self, **kwargs) @@ -937,8 +939,8 @@ def __init__( @register_embeddings class TransformerOnnxDocumentEmbeddings(DocumentEmbeddings, TransformerOnnxEmbeddings): def __init__( - self, - **kwargs, + self, + **kwargs, ) -> None: TransformerOnnxEmbeddings.__init__(self, **kwargs) @@ -948,27 +950,27 @@ class TransformerEmbeddings(TransformerBaseEmbeddings): onnx_cls: Type[TransformerOnnxEmbeddings] = TransformerOnnxEmbeddings def __init__( - self, - model: str = "bert-base-uncased", - fine_tune: bool = True, - layers: str = "-1", - layer_mean: bool = True, - subtoken_pooling: str = "first", - cls_pooling: str = "cls", - is_token_embedding: bool = True, - is_document_embedding: bool = True, - allow_long_sentences: bool = False, - use_context: Union[bool, int] = False, - respect_document_boundaries: bool = True, - context_dropout: float = 0.5, - saved_config: Optional[PretrainedConfig] = None, - tokenizer_data: Optional[BytesIO] = None, - feature_extractor_data: Optional[BytesIO] = None, - name: Optional[str] = None, - force_max_length: bool = False, - needs_manual_ocr: Optional[bool] = None, - use_context_separator: bool = True, - **kwargs, + self, + model: str = "bert-base-uncased", + fine_tune: bool = True, + layers: str = "-1", + layer_mean: bool = True, + subtoken_pooling: str = "first", + cls_pooling: str = "cls", + is_token_embedding: bool = True, + is_document_embedding: bool = True, + allow_long_sentences: bool = False, + use_context: Union[bool, int] = False, + respect_document_boundaries: bool = True, + context_dropout: float = 0.5, + saved_config: Optional[PretrainedConfig] = None, + tokenizer_data: Optional[BytesIO] = None, + feature_extractor_data: Optional[BytesIO] = None, + name: Optional[str] = None, + force_max_length: bool = False, + needs_manual_ocr: Optional[bool] = None, + use_context_separator: bool = True, + **kwargs, ) -> None: self.instance_parameters = self.get_instance_parameters(locals=locals()) del self.instance_parameters["saved_config"] @@ -1105,6 +1107,15 @@ def embedding_length(self) -> int: return self.embedding_length_internal + + def _load_from_state_dict(self, state_dict, prefix, local_metadata, strict, + missing_keys, unexpected_keys, error_msgs): + if transformers.__version__ >= Version(4, 31, 0): + assert isinstance(state_dict, dict) + state_dict.pop(f"{prefix}model.embeddings.position_ids", None) + super(TransformerEmbeddings, self)._load_from_state_dict(state_dict, prefix, local_metadata, strict, + missing_keys, unexpected_keys, error_msgs) + def _has_initial_cls_token(self) -> bool: # most models have CLS token as last token (GPT-1, GPT-2, TransfoXL, XLNet, XLM), but BERT is initial if self.tokenizer_needs_ocr_boxes: @@ -1191,6 +1202,8 @@ def __setstate__(self, state): self.__dict__[key] = embedding.__dict__[key] if model_state_dict: + if transformers.__version__ >= Version(4, 31, 0): + model_state_dict.pop("embeddings.position_ids", None) self.model.load_state_dict(model_state_dict) @classmethod @@ -1235,23 +1248,23 @@ def to_params(self): def _can_document_embedding_shortcut(self): # cls first pooling can be done without recreating sentence hidden states return ( - self.document_embedding - and not self.token_embedding - and self.cls_pooling == "cls" - and self.initial_cls_token + self.document_embedding + and not self.token_embedding + and self.cls_pooling == "cls" + and self.initial_cls_token ) def forward( - self, - input_ids: torch.Tensor, - sub_token_lengths: Optional[torch.LongTensor] = None, - token_lengths: Optional[torch.LongTensor] = None, - attention_mask: Optional[torch.Tensor] = None, - overflow_to_sample_mapping: Optional[torch.Tensor] = None, - word_ids: Optional[torch.Tensor] = None, - langs: Optional[torch.Tensor] = None, - bbox: Optional[torch.Tensor] = None, - pixel_values: Optional[torch.Tensor] = None, + self, + input_ids: torch.Tensor, + sub_token_lengths: Optional[torch.LongTensor] = None, + token_lengths: Optional[torch.LongTensor] = None, + attention_mask: Optional[torch.Tensor] = None, + overflow_to_sample_mapping: Optional[torch.Tensor] = None, + word_ids: Optional[torch.Tensor] = None, + langs: Optional[torch.Tensor] = None, + bbox: Optional[torch.Tensor] = None, + pixel_values: Optional[torch.Tensor] = None, ): model_kwargs = {} if langs is not None: @@ -1340,8 +1353,8 @@ def forward( word_ids, token_lengths, ) - all_token_embeddings[:, :, sentence_hidden_states.shape[2] :] = fill_masked_elements( - all_token_embeddings[:, :, sentence_hidden_states.shape[2] :], + all_token_embeddings[:, :, sentence_hidden_states.shape[2]:] = fill_masked_elements( + all_token_embeddings[:, :, sentence_hidden_states.shape[2]:], sentence_hidden_states, last_mask, word_ids, @@ -1361,7 +1374,7 @@ def _forward_tensors(self, tensors) -> Dict[str, torch.Tensor]: return self.forward(**tensors) def export_onnx( - self, path: Union[str, Path], example_sentences: List[Sentence], **kwargs + self, path: Union[str, Path], example_sentences: List[Sentence], **kwargs ) -> TransformerOnnxEmbeddings: """Export TransformerEmbeddings to OnnxFormat. diff --git a/requirements.txt b/requirements.txt index d3ca17e30..83f09e2ec 100644 --- a/requirements.txt +++ b/requirements.txt @@ -25,4 +25,5 @@ tqdm>=4.63.0 transformer-smaller-training-vocab>=0.2.3 transformers[sentencepiece]>=4.18.0,<5.0.0 urllib3<2.0.0,>=1.0.0 # pin below 2 to make dependency resolution faster. -wikipedia-api>=0.5.7 \ No newline at end of file +wikipedia-api>=0.5.7 +semver<4.0.0,>=3.0.0 \ No newline at end of file From 270ef050625aa5f7dae29b2737cc2c3ddef18a16 Mon Sep 17 00:00:00 2001 From: Benedikt Fuchs Date: Mon, 31 Jul 2023 15:47:24 +0200 Subject: [PATCH 3/6] fix ruff --- flair/embeddings/transformer.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/flair/embeddings/transformer.py b/flair/embeddings/transformer.py index fb82c0bf7..4bf75c22d 100644 --- a/flair/embeddings/transformer.py +++ b/flair/embeddings/transformer.py @@ -8,11 +8,11 @@ from abc import abstractmethod from io import BytesIO from pathlib import Path -from semver import Version -from typing import Any, Dict, List, Optional, Tuple, Type, Union, cast, Mapping +from typing import Any, Dict, List, Optional, Tuple, Type, Union, cast import torch import transformers +from semver import Version from torch.jit import ScriptModule from transformers import ( CONFIG_MAPPING, @@ -1113,7 +1113,7 @@ def _load_from_state_dict(self, state_dict, prefix, local_metadata, strict, if transformers.__version__ >= Version(4, 31, 0): assert isinstance(state_dict, dict) state_dict.pop(f"{prefix}model.embeddings.position_ids", None) - super(TransformerEmbeddings, self)._load_from_state_dict(state_dict, prefix, local_metadata, strict, + super()._load_from_state_dict(state_dict, prefix, local_metadata, strict, missing_keys, unexpected_keys, error_msgs) def _has_initial_cls_token(self) -> bool: From c492abff575af74681277f23d4eb447688e8444c Mon Sep 17 00:00:00 2001 From: Benedikt Fuchs Date: Mon, 31 Jul 2023 19:04:31 +0200 Subject: [PATCH 4/6] fix extern dataset update --- flair/embeddings/transformer.py | 225 ++++++++++++++++---------------- tests/test_datasets.py | 2 +- 2 files changed, 114 insertions(+), 113 deletions(-) diff --git a/flair/embeddings/transformer.py b/flair/embeddings/transformer.py index 4bf75c22d..c494c1cf8 100644 --- a/flair/embeddings/transformer.py +++ b/flair/embeddings/transformer.py @@ -70,11 +70,11 @@ def truncate_hidden_states(hidden_states: torch.Tensor, input_ids: torch.Tensor) @torch.jit.script_if_tracing def combine_strided_tensors( - hidden_states: torch.Tensor, - overflow_to_sample_mapping: torch.Tensor, - half_stride: int, - max_length: int, - default_value: int, + hidden_states: torch.Tensor, + overflow_to_sample_mapping: torch.Tensor, + half_stride: int, + max_length: int, + default_value: int, ) -> torch.Tensor: _, counts = torch.unique(overflow_to_sample_mapping, sorted=True, return_counts=True) sentence_count = int(overflow_to_sample_mapping.max().item() + 1) @@ -94,9 +94,9 @@ def combine_strided_tensors( selected_sentences = hidden_states[overflow_to_sample_mapping == sentence_id] if selected_sentences.size(0) > 1: start_part = selected_sentences[0, : half_stride + 1] - mid_part = selected_sentences[:, half_stride + 1: max_length - 1 - half_stride] + mid_part = selected_sentences[:, half_stride + 1 : max_length - 1 - half_stride] mid_part = torch.reshape(mid_part, (mid_part.shape[0] * mid_part.shape[1],) + mid_part.shape[2:]) - end_part = selected_sentences[selected_sentences.shape[0] - 1, max_length - half_stride - 1:] + end_part = selected_sentences[selected_sentences.shape[0] - 1, max_length - half_stride - 1 :] sentence_hidden_state = torch.cat((start_part, mid_part, end_part), dim=0) sentence_hidden_states[sentence_id, : sentence_hidden_state.shape[0]] = torch.cat( (start_part, mid_part, end_part), dim=0 @@ -109,11 +109,11 @@ def combine_strided_tensors( @torch.jit.script_if_tracing def fill_masked_elements( - all_token_embeddings: torch.Tensor, - sentence_hidden_states: torch.Tensor, - mask: torch.Tensor, - word_ids: torch.Tensor, - lengths: torch.LongTensor, + all_token_embeddings: torch.Tensor, + sentence_hidden_states: torch.Tensor, + mask: torch.Tensor, + word_ids: torch.Tensor, + lengths: torch.LongTensor, ): for i in torch.arange(int(all_token_embeddings.shape[0])): r = insert_missing_embeddings(sentence_hidden_states[i][mask[i] & (word_ids[i] >= 0)], word_ids[i], lengths[i]) @@ -123,7 +123,7 @@ def fill_masked_elements( @torch.jit.script_if_tracing def insert_missing_embeddings( - token_embeddings: torch.Tensor, word_id: torch.Tensor, length: torch.LongTensor + token_embeddings: torch.Tensor, word_id: torch.Tensor, length: torch.LongTensor ) -> torch.Tensor: # in some cases we need to insert zero vectors for tokens without embedding. if token_embeddings.shape[0] == 0: @@ -166,10 +166,10 @@ def insert_missing_embeddings( @torch.jit.script_if_tracing def fill_mean_token_embeddings( - all_token_embeddings: torch.Tensor, - sentence_hidden_states: torch.Tensor, - word_ids: torch.Tensor, - token_lengths: torch.Tensor, + all_token_embeddings: torch.Tensor, + sentence_hidden_states: torch.Tensor, + word_ids: torch.Tensor, + token_lengths: torch.Tensor, ): for i in torch.arange(all_token_embeddings.shape[0]): for _id in torch.arange(token_lengths[i]): # type: ignore[call-overload] @@ -196,7 +196,7 @@ def document_max_pooling(sentence_hidden_states: torch.Tensor, sentence_lengths: def _legacy_reconstruct_word_ids( - embedding: "TransformerBaseEmbeddings", flair_tokens: List[List[str]] + embedding: "TransformerBaseEmbeddings", flair_tokens: List[List[str]] ) -> List[List[Optional[int]]]: word_ids_list = [] max_len = 0 @@ -307,25 +307,25 @@ class TransformerBaseEmbeddings(Embeddings[Sentence]): """ def __init__( - self, - name: str, - tokenizer: PreTrainedTokenizer, - embedding_length: int, - context_length: int, - context_dropout: float, - respect_document_boundaries: bool, - stride: int, - allow_long_sentences: bool, - fine_tune: bool, - truncate: bool, - use_lang_emb: bool, - is_document_embedding: bool = False, - is_token_embedding: bool = False, - force_device: Optional[torch.device] = None, - force_max_length: bool = False, - feature_extractor: Optional[FeatureExtractionMixin] = None, - needs_manual_ocr: Optional[bool] = None, - use_context_separator: bool = True, + self, + name: str, + tokenizer: PreTrainedTokenizer, + embedding_length: int, + context_length: int, + context_dropout: float, + respect_document_boundaries: bool, + stride: int, + allow_long_sentences: bool, + fine_tune: bool, + truncate: bool, + use_lang_emb: bool, + is_document_embedding: bool = False, + is_token_embedding: bool = False, + force_device: Optional[torch.device] = None, + force_max_length: bool = False, + feature_extractor: Optional[FeatureExtractionMixin] = None, + needs_manual_ocr: Optional[bool] = None, + use_context_separator: bool = True, ) -> None: self.name = name super().__init__() @@ -473,32 +473,32 @@ def prepare_tensors(self, sentences: List[Sentence], device: Optional[torch.devi # random check some tokens to save performance. if (self.needs_manual_ocr or self.tokenizer_needs_ocr_boxes) and not all( - [ - flair_tokens[0][0].has_metadata("bbox"), - flair_tokens[0][-1].has_metadata("bbox"), - flair_tokens[-1][0].has_metadata("bbox"), - flair_tokens[-1][-1].has_metadata("bbox"), - ] + [ + flair_tokens[0][0].has_metadata("bbox"), + flair_tokens[0][-1].has_metadata("bbox"), + flair_tokens[-1][0].has_metadata("bbox"), + flair_tokens[-1][-1].has_metadata("bbox"), + ] ): raise ValueError(f"The embedding '{self.name}' requires the ocr 'bbox' set as metadata on all tokens.") if self.feature_extractor is not None and not all( - [ - sentences[0].has_metadata("image"), - sentences[-1].has_metadata("image"), - ] + [ + sentences[0].has_metadata("image"), + sentences[-1].has_metadata("image"), + ] ): raise ValueError(f"The embedding '{self.name}' requires the 'image' set as metadata for all sentences.") return self.__build_transformer_model_inputs(sentences, offsets, lengths, flair_tokens, device) def __build_transformer_model_inputs( - self, - sentences: List[Sentence], - offsets: List[int], - sentence_lengths: List[int], - flair_tokens: List[List[Token]], - device: torch.device, + self, + sentences: List[Sentence], + offsets: List[int], + sentence_lengths: List[int], + flair_tokens: List[List[Token]], + device: torch.device, ): tokenizer_kwargs: Dict[str, Any] = {} if self.tokenizer_needs_ocr_boxes: @@ -559,7 +559,7 @@ def __build_transformer_model_inputs( sentence_idx = 0 for sentence, part_length in zip(sentences, sentence_part_lengths): lang_id = lang2id.get(sentence.get_language_code(), 0) - model_kwargs["langs"][sentence_idx: sentence_idx + part_length] = lang_id + model_kwargs["langs"][sentence_idx : sentence_idx + part_length] = lang_id sentence_idx += part_length if "bbox" in batch_encoding: @@ -801,12 +801,12 @@ def collect_dynamic_axes(cls, embedding: "TransformerEmbeddings", tensors): @classmethod def export_from_embedding( - cls, - path: Union[str, Path], - embedding: "TransformerEmbeddings", - example_sentences: List[Sentence], - opset_version: int = 14, - providers: Optional[List] = None, + cls, + path: Union[str, Path], + embedding: "TransformerEmbeddings", + example_sentences: List[Sentence], + opset_version: int = 14, + providers: Optional[List] = None, ): path = str(path) example_tensors = embedding.prepare_tensors(example_sentences) @@ -899,7 +899,7 @@ def create_from_embedding(cls, module: ScriptModule, embedding: "TransformerEmbe @classmethod def parameter_to_list( - cls, embedding: "TransformerEmbeddings", wrapper: torch.nn.Module, sentences: List[Sentence] + cls, embedding: "TransformerEmbeddings", wrapper: torch.nn.Module, sentences: List[Sentence] ) -> Tuple[List[str], List[torch.Tensor]]: tensors = embedding.prepare_tensors(sentences) param_names = list(inspect.signature(wrapper.forward).parameters.keys()) @@ -912,8 +912,8 @@ def parameter_to_list( @register_embeddings class TransformerJitWordEmbeddings(TokenEmbeddings, TransformerJitEmbeddings): def __init__( - self, - **kwargs, + self, + **kwargs, ) -> None: TransformerJitEmbeddings.__init__(self, **kwargs) @@ -921,8 +921,8 @@ def __init__( @register_embeddings class TransformerJitDocumentEmbeddings(DocumentEmbeddings, TransformerJitEmbeddings): def __init__( - self, - **kwargs, + self, + **kwargs, ) -> None: TransformerJitEmbeddings.__init__(self, **kwargs) @@ -930,8 +930,8 @@ def __init__( @register_embeddings class TransformerOnnxWordEmbeddings(TokenEmbeddings, TransformerOnnxEmbeddings): def __init__( - self, - **kwargs, + self, + **kwargs, ) -> None: TransformerOnnxEmbeddings.__init__(self, **kwargs) @@ -939,8 +939,8 @@ def __init__( @register_embeddings class TransformerOnnxDocumentEmbeddings(DocumentEmbeddings, TransformerOnnxEmbeddings): def __init__( - self, - **kwargs, + self, + **kwargs, ) -> None: TransformerOnnxEmbeddings.__init__(self, **kwargs) @@ -950,27 +950,27 @@ class TransformerEmbeddings(TransformerBaseEmbeddings): onnx_cls: Type[TransformerOnnxEmbeddings] = TransformerOnnxEmbeddings def __init__( - self, - model: str = "bert-base-uncased", - fine_tune: bool = True, - layers: str = "-1", - layer_mean: bool = True, - subtoken_pooling: str = "first", - cls_pooling: str = "cls", - is_token_embedding: bool = True, - is_document_embedding: bool = True, - allow_long_sentences: bool = False, - use_context: Union[bool, int] = False, - respect_document_boundaries: bool = True, - context_dropout: float = 0.5, - saved_config: Optional[PretrainedConfig] = None, - tokenizer_data: Optional[BytesIO] = None, - feature_extractor_data: Optional[BytesIO] = None, - name: Optional[str] = None, - force_max_length: bool = False, - needs_manual_ocr: Optional[bool] = None, - use_context_separator: bool = True, - **kwargs, + self, + model: str = "bert-base-uncased", + fine_tune: bool = True, + layers: str = "-1", + layer_mean: bool = True, + subtoken_pooling: str = "first", + cls_pooling: str = "cls", + is_token_embedding: bool = True, + is_document_embedding: bool = True, + allow_long_sentences: bool = False, + use_context: Union[bool, int] = False, + respect_document_boundaries: bool = True, + context_dropout: float = 0.5, + saved_config: Optional[PretrainedConfig] = None, + tokenizer_data: Optional[BytesIO] = None, + feature_extractor_data: Optional[BytesIO] = None, + name: Optional[str] = None, + force_max_length: bool = False, + needs_manual_ocr: Optional[bool] = None, + use_context_separator: bool = True, + **kwargs, ) -> None: self.instance_parameters = self.get_instance_parameters(locals=locals()) del self.instance_parameters["saved_config"] @@ -1107,14 +1107,15 @@ def embedding_length(self) -> int: return self.embedding_length_internal - - def _load_from_state_dict(self, state_dict, prefix, local_metadata, strict, - missing_keys, unexpected_keys, error_msgs): + def _load_from_state_dict( + self, state_dict, prefix, local_metadata, strict, missing_keys, unexpected_keys, error_msgs + ): if transformers.__version__ >= Version(4, 31, 0): assert isinstance(state_dict, dict) state_dict.pop(f"{prefix}model.embeddings.position_ids", None) - super()._load_from_state_dict(state_dict, prefix, local_metadata, strict, - missing_keys, unexpected_keys, error_msgs) + super()._load_from_state_dict( + state_dict, prefix, local_metadata, strict, missing_keys, unexpected_keys, error_msgs + ) def _has_initial_cls_token(self) -> bool: # most models have CLS token as last token (GPT-1, GPT-2, TransfoXL, XLNet, XLM), but BERT is initial @@ -1248,23 +1249,23 @@ def to_params(self): def _can_document_embedding_shortcut(self): # cls first pooling can be done without recreating sentence hidden states return ( - self.document_embedding - and not self.token_embedding - and self.cls_pooling == "cls" - and self.initial_cls_token + self.document_embedding + and not self.token_embedding + and self.cls_pooling == "cls" + and self.initial_cls_token ) def forward( - self, - input_ids: torch.Tensor, - sub_token_lengths: Optional[torch.LongTensor] = None, - token_lengths: Optional[torch.LongTensor] = None, - attention_mask: Optional[torch.Tensor] = None, - overflow_to_sample_mapping: Optional[torch.Tensor] = None, - word_ids: Optional[torch.Tensor] = None, - langs: Optional[torch.Tensor] = None, - bbox: Optional[torch.Tensor] = None, - pixel_values: Optional[torch.Tensor] = None, + self, + input_ids: torch.Tensor, + sub_token_lengths: Optional[torch.LongTensor] = None, + token_lengths: Optional[torch.LongTensor] = None, + attention_mask: Optional[torch.Tensor] = None, + overflow_to_sample_mapping: Optional[torch.Tensor] = None, + word_ids: Optional[torch.Tensor] = None, + langs: Optional[torch.Tensor] = None, + bbox: Optional[torch.Tensor] = None, + pixel_values: Optional[torch.Tensor] = None, ): model_kwargs = {} if langs is not None: @@ -1353,8 +1354,8 @@ def forward( word_ids, token_lengths, ) - all_token_embeddings[:, :, sentence_hidden_states.shape[2]:] = fill_masked_elements( - all_token_embeddings[:, :, sentence_hidden_states.shape[2]:], + all_token_embeddings[:, :, sentence_hidden_states.shape[2] :] = fill_masked_elements( + all_token_embeddings[:, :, sentence_hidden_states.shape[2] :], sentence_hidden_states, last_mask, word_ids, @@ -1374,7 +1375,7 @@ def _forward_tensors(self, tensors) -> Dict[str, torch.Tensor]: return self.forward(**tensors) def export_onnx( - self, path: Union[str, Path], example_sentences: List[Sentence], **kwargs + self, path: Union[str, Path], example_sentences: List[Sentence], **kwargs ) -> TransformerOnnxEmbeddings: """Export TransformerEmbeddings to OnnxFormat. diff --git a/tests/test_datasets.py b/tests/test_datasets.py index 91a1742f8..dc3f27ae0 100644 --- a/tests/test_datasets.py +++ b/tests/test_datasets.py @@ -748,7 +748,7 @@ def test_masakhane_corpus(tasks_base_path): "bam": {"train": 4462, "dev": 638, "test": 1274}, "bbj": {"train": 3384, "dev": 483, "test": 966}, "ewe": {"train": 3505, "dev": 501, "test": 1001}, - 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d): self.__dict__ = d # set 'add_unk' if the dictionary was created with a version of Flair older than 0.9 - if "add_unk" not in self.__dict__.keys(): + if "add_unk" not in self.__dict__: self.__dict__["add_unk"] = b"" in self.__dict__["idx2item"] @classmethod diff --git a/flair/embeddings/base.py b/flair/embeddings/base.py index a9521142b..bf3e7645a 100644 --- a/flair/embeddings/base.py +++ b/flair/embeddings/base.py @@ -194,7 +194,7 @@ def embedding_type(self) -> str: def _everything_embedded(self, data_points: Sequence[Sentence]) -> bool: for sentence in data_points: for token in sentence.tokens: - if self.name not in token._embeddings.keys(): + if self.name not in token._embeddings: return False return True diff --git a/flair/embeddings/legacy.py b/flair/embeddings/legacy.py index 39275a16a..237bf6aff 100644 --- a/flair/embeddings/legacy.py +++ b/flair/embeddings/legacy.py @@ -1330,7 +1330,7 @@ def embed(self, sentences: Union[List[Sentence], Sentence]): sentences = [sentences] for sentence in sentences: - if self.name not in sentence._embeddings.keys(): + if self.name not in sentence._embeddings: everything_embedded = False if not everything_embedded: