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DESCRIPTION
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Package: refdb
Type: Package
Title: A DNA Reference Library Manager
Version: 0.1.1
Authors@R:
c(person(given = "Francois",
family = "Keck",
role = c("aut", "cre", "cph"),
email = "[email protected]",
comment = c(ORCID = "0000-0002-3323-4167"))
)
Maintainer: Francois Keck <[email protected]>
Description: Reference database manager offering a set of functions
to import, organize, clean, filter, audit and export reference genetic
data. Provide functions to download sequence data from
Bold Systems (<https://www.boldsystems.org/>) and
NCBI GenBank <https://www.ncbi.nlm.nih.gov/genbank/>.
Designed as an environment for semi-automatic and assisted
construction of reference databases and to improve standardization
and repeatability in barcoding and metabarcoding studies.
License: GPL-3
URL: https://fkeck.github.io/refdb/
BugReports: https://github.com/fkeck/refdb/issues
Encoding: UTF-8
Depends: R (>= 3.1.0)
Imports:
tibble,
readr,
dplyr,
stringr,
tidyr,
rentrez,
bold,
taxize,
xml2,
bioseq,
ape,
igraph,
ggplot2,
ggraph,
yaml,
rlang,
rmarkdown,
leaflet
RoxygenNote: 7.2.1
Suggests:
testthat (>= 3.0.0),
covr,
DT,
knitr,
forcats
Config/testthat/edition: 3
VignetteBuilder: knitr