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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta http-equiv="Content-Style-Type" content="text/css" />
<meta name="generator" content="pandoc" />
<title></title>
<style type="text/css">code{white-space: pre;}</style>
<link rel="stylesheet" href="kult.css" type="text/css" />
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<body>
<h1 id="shiny-applications-for-epidemiology">Shiny Applications for Epidemiology</h1>
<p>epiapps.com is a public hosted repository of useful statistical tools in the area of epidemiology. These applications are hosted and maintained by <a href="http://www.fellstat.com/">Fellows Statistics Inc.</a>. To report an issue or bug, please create a GitHub issue on <a href="https://github.com/fellstat/epiapps">the repository</a>.</p>
<hr />
<h2 id="consensus-estimation">Consensus Estimation</h2>
<p>This tool assists in synthesizing multiple independent estimates of a quantity (e.g. population size or prevalence). Stakeholders may add additional information regarding the methodological quality of the studies and prior knowledge of the metric.</p>
<h3 style="text-align: center;">
<a href="https://epiapps.com/apps/combine_estimates/"> Launch Application</a>
</h3>
<h3 id="details">Details:</h3>
<table>
<tbody>
<tr class="odd">
<td align="right"><strong><em>Authors:</em></strong></td>
<td align="left">Ian E. Fellows</td>
</tr>
<tr class="even">
<td align="right"><strong><em>Github Repository:</em></strong></td>
<td align="left"><a href="https://github.com/fellstat/combine_estimates" class="uri">https://github.com/fellstat/combine_estimates</a></td>
</tr>
</tbody>
</table>
<hr />
<h2 id="multiple-source-capture-recapture">Multiple Source Capture Recapture</h2>
<p>Implements user interfaces for log-linear models, Bayesian model averaging and Bayesian Dirichlet process mixture models.</p>
<h3 style="text-align: center;">
<a href="https://epiapps.com/apps/rcapture/"> Analysis Application</a> | <a href="https://epiapps.com/apps/capture_power/"> Power Calculator</a>
</h3>
<h3 id="details-1">Details:</h3>
<table style="width:11%;">
<colgroup>
<col width="5%" />
<col width="5%" />
</colgroup>
<tbody>
<tr class="odd">
<td align="right"><strong><em>Authors:</em></strong></td>
<td align="left">Ian E. Fellows</td>
</tr>
<tr class="even">
<td align="right"><strong><em>Video Tutorial:</em></strong></td>
<td align="left"><a href="https://www.youtube.com/watch?v=PgmyUnFlo5Y&feature=youtu.be" class="uri">https://www.youtube.com/watch?v=PgmyUnFlo5Y&feature=youtu.be</a></td>
</tr>
<tr class="odd">
<td align="right"><strong><em>Manual:</em></strong></td>
<td align="left"><a href="https://fellstat.github.io/shinyrecap/" class="uri">https://fellstat.github.io/shinyrecap/</a></td>
</tr>
<tr class="even">
<td align="right"><strong><em>Github Repository:</em></strong></td>
<td align="left"><a href="https://github.com/fellstat/shinyrecap" class="uri">https://github.com/fellstat/shinyrecap</a></td>
</tr>
</tbody>
</table>
<hr />
<h2 id="population-size-estimation-using-multiple-data-sources">Population Size Estimation Using Multiple Data Sources</h2>
<p>Implements a user interface for an algorithm for presenting a Bayesian hierarchical model for estimating the sizes of local and national populations. The model incorporates multiple commonly used data sources including mapping data, surveys, interventions, capture-recapture data, estimates or guesstimates from organizations, and expert opinion.</p>
<h3 style="text-align: center;">
<a href="https://epiapps.com/apps/size_estimation/"> Launch Application</a>
</h3>
<h3 id="details-2">Details:</h3>
<table style="width:11%;">
<colgroup>
<col width="5%" />
<col width="5%" />
</colgroup>
<tbody>
<tr class="odd">
<td align="right"><strong><em>Authors:</em></strong></td>
<td align="left">Jacob Parsons using the algorithm developed by Le Bao, Adrian E. Raftery and Kyongwon Kim</td>
</tr>
<tr class="even">
<td align="right"><strong><em>CRAN Repository:</em></strong></td>
<td align="left"><a href="https://CRAN.R-project.org/package=SizeEstimation" class="uri">https://CRAN.R-project.org/package=SizeEstimation</a></td>
</tr>
<tr class="odd">
<td align="right"><strong><em>Reference:</em></strong></td>
<td align="left">Bao, L., Raftery, A. E., & Reddy, A. (2015). Estimating the sizes of populations at risk of HIV infection from multiple data sources using a Bayesian hierarchical model. Statistics and its Interface, 8(2), 125-136.</td>
</tr>
</tbody>
</table>
<hr />
<h2 id="incidence-estimation-in-cross-sectional-surveys-using-testing-history">Incidence Estimation In Cross-sectional Surveys Using Testing History</h2>
<p>Utilizes crosssectional survey data containing information on participants' testing history and diagnosis to estimate incidence.</p>
<h3 style="text-align: center;">
<a href="https://epiapps.com/apps/testing_incidence/"> Launch Application</a>
</h3>
<h3 id="details-3">Details:</h3>
<table style="width:11%;">
<colgroup>
<col width="5%" />
<col width="5%" />
</colgroup>
<tbody>
<tr class="odd">
<td align="right"><strong><em>Authors:</em></strong></td>
<td align="left">Ian E. Fellows</td>
</tr>
<tr class="even">
<td align="right"><strong><em>Video Tutorial:</em></strong></td>
<td align="left"><a href="https://www.youtube.com/watch?v=YVPcLLs9zxc&t=08s" class="uri">https://www.youtube.com/watch?v=YVPcLLs9zxc&t=08s</a></td>
</tr>
<tr class="odd">
<td align="right"><strong><em>Manual:</em></strong></td>
<td align="left"><a href="https://github.com/fellstat/TestingHistoryIncidence/wiki/Shiny-App-Documentation" class="uri">https://github.com/fellstat/TestingHistoryIncidence/wiki/Shiny-App-Documentation</a></td>
</tr>
<tr class="even">
<td align="right"><strong><em>Github Repository:</em></strong></td>
<td align="left"><a href="https://github.com/fellstat/TestingHistoryIncidence" class="uri">https://github.com/fellstat/TestingHistoryIncidence</a></td>
</tr>
<tr class="odd">
<td align="right"><strong><em>Example Data:</em></strong></td>
<td align="left"><a href="https://raw.githubusercontent.com/fellstat/TestingHistoryIncidence/master/inst/shiny_ui/tstdat.csv" class="uri">https://raw.githubusercontent.com/fellstat/TestingHistoryIncidence/master/inst/shiny_ui/tstdat.csv</a></td>
</tr>
</tbody>
</table>
<hr />
</body>
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