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Genome assembly tools

List of genome assembly tools based on the one presented in the review: "A deep dive into genome assemblies of non-vertebrate animals." Guiglielmoni N, Rivera-Vicéns R, Koszul R, Flot J-F. Peer Community Journal, 2022. doi:10.24072/pcjournal.128

Contributing

Adding a software can be done by adding a line in the corresponding CSV file:

• data/assemblers.csv for genome assemblers.
• data/processors.csv for assembly pre- or post-processing tools.

Modifications to this readme should be done in the template file of the corresponding section (see templates). Every month, a Github action automatically updates the README using the data and templates, fetching the latest commit date for each software.

Table of contents

• Genome assemblers
  • Sanger reads
  • High-accuracy short reads
  • Low-accuracy long reads
  • High-accuracy long reads
• Assembly pre and post-processing
  • Long-read error correction
  • Polishing
  • Haplotig purging
  • Scaffolding
  • Gap filling