Neuroptimus is a graphical tool for fitting the parameters of neuronal models
Install git and type:
git clone https://github.com/mohacsimate/neuroptimus
The following python libraries are required:
- python
- numpy
- eFEL
- matplotlib
The following libraries are recommended:
- neuron
- scipy
- PyQt5
- inspyred
- pyelectro
- Pygmo
- bluepyopt
- ipyparallel
- nest
- nest_simulator
You can get all the libraries with pip with the following command (for numpy):
pip install numpy
You can run Neuroptimus (with a GUI) directly from its folder with (PyQt5 required):
python neuroptimus.py -g
Or for the command line version (you must specify a configuration file as well):
python neuroptimus.py -c path/to/example.json
The package was tested on the following systems:
1. Ubuntu 22.04.1 LTS
2. Fedora release 32 (Thirty Two) (neurofedora)
Project Leader:
- Szabolcs Káli:
[email protected]
Lead Developer:
- Máté Mohácsi
[email protected]
- Sára Sáray
[email protected]
- Márk Török Patrik
[email protected]
- Peter Friedrich:
[email protected]