Distribution Release

This release fixes only distribution issues.

The files sina-1.3.4-macos.tar.gz and sina-1.3.4-linux.tar.gz contain stand-alone versions of SINA that should install on most macOS and Linux systems without further requirements. If you encounter problems, please open an issue.

• build binary releases for macOS and Linux (#26)
• fix "search.h" missing in source tar ball (#27)

Maintenance Release

• add option --fasta-write-dots; writes dots on edges
• add option --fasta-write-dna; writes T/t instead of U/u (#24)
• fix PT server fails to build if ARBHOME not set (#15)
• fix psina not installed to $bindir
• fix tab character in sequence causes sequence to be skipped (#21)
• fix last line of input FASTA ignored if missing newline (#16)
• fix --db parameter demanded even if not required due to use of --prealigned
• fix SIGPIPE race on PT server shutdown (#11)

Maintenance Release

• split --help into "common" and advanced options (--help-all)
• add psina wrapper script (runs parallel instances of SINA to align a
  single FASTA file)
• fix memory access failure in cseq
• fix memory access failure in mseq
• fix crash on all references removed by filters

First Github Release

• add OSX support
• change license to GPL
• remove limitation on ARB integration mode
• move revisioning to git
• fix compilation with CLANG

v1.3.1-a5

Bump version: 1.3.1-a4 → 1.3.1-a5