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Summary:
Clustering stability could be assessed by doing multiple clusterings, always randomly sampling 90% of the data.
Consensus approach could be used to extract stable clustering.
Drawbacks:
Computationally expensive
Open questions:
How to combine this with clustification? Should it be only used to evaluate stability of one approach, or automatically to generate consensus clustering?
Background:
Daria implemented a resampling strategy, because she noted that adding two new samples completely changed her previous clustering. She ended up finding gene programs by seeing which genes are stably co-differential in clusters, and then came up with hard clusters by using thresholds to assign cells to one or multiple cluster labels.
The text was updated successfully, but these errors were encountered:
Summary:
Clustering stability could be assessed by doing multiple clusterings, always randomly sampling 90% of the data.
Consensus approach could be used to extract stable clustering.
Drawbacks:
Computationally expensive
Open questions:
How to combine this with clustification? Should it be only used to evaluate stability of one approach, or automatically to generate consensus clustering?
Background:
Daria implemented a resampling strategy, because she noted that adding two new samples completely changed her previous clustering. She ended up finding gene programs by seeing which genes are stably co-differential in clusters, and then came up with hard clusters by using thresholds to assign cells to one or multiple cluster labels.
The text was updated successfully, but these errors were encountered: