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Support for all bond types in macromolecules mode #6028

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ljubica-milovic opened this issue Nov 29, 2024 · 0 comments · May be fixed by #6181
Open

Support for all bond types in macromolecules mode #6028

ljubica-milovic opened this issue Nov 29, 2024 · 0 comments · May be fixed by #6181
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feature request Macro-Micro Bucket: Macro-Micro View related issues Micro-Macro Bucket: Bugs related to Micro structures on Macro mode Test Cases Written Test cases has been written for that issue

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Background

This is a continuation of a larger "Molecules in Macromolecules mode" issue.

Bond types

There are 14(+2) bond types supported in molecules mode:
image

1 - Single Bond (supported in macromolecules mode already);
2 - Double Bond (supported in macromolecules mode already);
3 - Triple Bond;
4 - Any Bond;
5 - Aromatic Bond (one representation);
6 - Single/Double Bond;
7 - Single/Aromatic Bond;
8 - Double/Aromatic Bond;
9 - Dative Bond;
10 - Hydrogen Bond;
11 - Single Up Bond (supported in macromolecules mode already);
12 - Single Down Bond (supported in macromolecules mode already);
13 - Single Up/Down Bond (supported in macromolecules mode, but incorrectly - as a simple single bond);
14 - Double Cis/Trans Bond (supported in macromolecules mode, but incorrectly - as a simple double bond);
15 - Aromatic Bond (one representation);
16 - Thick foreground bond (an up bond surrounded by wide ends of other up bonds).

Requirements

  1. Small molecules form molecules mode with any bond type should not change their representation when user switcher to macromolecules mode.

  2. Structures with all kinds of bond types should be properly exported and imported as part of monomer-molecule structures.

@ljubica-milovic ljubica-milovic added feature request Macro-Micro Bucket: Macro-Micro View related issues Micro-Macro Bucket: Bugs related to Micro structures on Macro mode labels Nov 29, 2024
@Zhirnoff Zhirnoff added the Test Cases Written Test cases has been written for that issue label Dec 2, 2024
@svvald svvald self-assigned this Dec 16, 2024
svvald added a commit that referenced this issue Dec 20, 2024
svvald added a commit that referenced this issue Dec 20, 2024
svvald added a commit that referenced this issue Dec 24, 2024
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Labels
feature request Macro-Micro Bucket: Macro-Micro View related issues Micro-Macro Bucket: Bugs related to Micro structures on Macro mode Test Cases Written Test cases has been written for that issue
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