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Citing #34

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jjkoehorst opened this issue Mar 13, 2018 · 2 comments
Open

Citing #34

jjkoehorst opened this issue Mar 13, 2018 · 2 comments
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@josieburgin

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@jjkoehorst
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In material methods of a paper we are currently writing we have extensively used this method for downloading genomes. Is there a paper which could be cited beside mentioning it?
@nicsilvester
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Unfortunately, not yet. We are currently working on a manuscript for these tools. In the meantime I suggest referencing the public GitHub repository.

@nicsilvester
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Update: We are planning to submit an application note for publication soon. First we would like to make a few more additions to the scripts:

  • assemblies get the correct sequence version (awaiting a new API coming soon from ENA)
  • add tests to check installation
  • look at making pip installable (mainly it's the version 2 vs 3 python issue that's held this one up)

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@jjkoehorst @nicsilvester @josieburgin