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Sample does not exist #41

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yustinus1 opened this issue Jan 11, 2024 · 1 comment
Open

Sample does not exist #41

yustinus1 opened this issue Jan 11, 2024 · 1 comment

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@yustinus1
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I get an error like the following:

WARNING: Must specify a merged illumina fastq file with -illumina_1
WARNING: Must specify a merged illumina fastq file with -illumina_2
WARNING: Long read file '/input/sample01.fastq.gz' does not exist
WARNING: Illumina file '' does not exist
WARNING: Illumina file '' does not exist
WARNING: -threads not specified; using 8
Not tagged as short preferred, continuting to assemble with Flye
Long reads identified as nanopore
[2024-01-11 00:21:06] INFO: Starting Flye 2.9.2-b1786
[2024-01-11 00:21:06] ERROR: Can't open /input/sample01.fastq.gz

@sjtrauber
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Can you try unzipping the nanopore file?

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