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computationalWorfklow2.0.jsonld
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{
"@context": {
"schema": "http://schema.org/",
"rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
"rdfs": "http://www.w3.org/2000/01/rdf-schema#",
"bh2022GH": "https://discovery.biothings.io/view/bh2022GH/",
"bioschemas": "https://discovery.biothings.io/view/bioschemas/"
},
"@graph": [
{
"@id": "bh2022GH:MyBH2022",
"@type": "rdfs:Class",
"rdfs:comment": "Updates from GH propagated from this spreadsheet here \nhttps://docs.google.com/spreadsheets/d/18FITcHImkm5nNk4HyD-8iMhrzw98Ika6pTrFQ2iaNh8/edit#gid=292464567 (Alan Williams)\nupdates by Nick Juty\n- mandate formalParameter (https://github.com/BioSchemas/specifications/issues/563)\n- prefix for parameter (https://github.com/BioSchemas/specifications/issues/562)\n- applicationSubcategory & featureList (https://github.com/BioSchemas/specifications/issues/564)",
"rdfs:label": "MyBH2022",
"rdfs:subClassOf": {
"@id": "bioschemas:ComputationalWorkflow"
},
"$validation": {
"$schema": "http://json-schema.org/draft-07/schema#",
"type": "object",
"properties": {
"applicationSubCategory": {
"description": "Subcategory of the application. \"A URL to the subcategory of ComputationalWorkflow. Note that the applicationCategory is implicitly Workflow. Example: \"applicationCategory\": \"http://edamontology.org/topic_3948\"",
"owl:cardinality": "many",
"type": "string",
"format": "uri"
},
"featureList": {
"description": "Features or modules provided by this application (and possibly required by other applications). Functionality provided by the ComputatiionalWorkflow. ",
"owl:cardinality": "many",
"type": "string",
"format": "uri",
"oneOf": [
{
"type": "string"
},
{
"type": "array",
"items": {
"type": "string"
}
}
]
},
"documentation": {
"description": "Documentation describing the ComputationalWorkflow and its use.",
"anyOf": [
{
"format": "uri",
"type": "string"
},
{
"type": "array",
"items": {
"format": "uri",
"type": "string"
}
},
{
"@type": "CreativeWork",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
},
"required": []
},
{
"type": "array",
"items": {
"@type": "CreativeWork",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
},
"required": []
}
}
],
"owl:cardinality": "many"
},
"funding": {
"description": "The funding for the workflow",
"oneOf": [
{
"@type": "Grant",
"type": "object",
"properties": {
"sponsor": {
"oneOf": [
{
"@type": "Organization",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"alternateName": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
}
},
{
"@type": "Person",
"type": "object",
"properties": {
"affiliation": {
"@type": "Organization",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"alternateName": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
}
},
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
},
"required": [
"name"
]
}
]
},
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
},
"required": [
"name"
]
},
{
"type": "array",
"items": {
"@type": "Grant",
"type": "object",
"properties": {
"sponsor": {
"oneOf": [
{
"@type": "Organization",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"alternateName": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
}
},
{
"@type": "Person",
"type": "object",
"properties": {
"affiliation": {
"@type": "Organization",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"alternateName": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
}
},
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
},
"required": [
"name"
]
}
]
},
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
},
"required": [
"name"
]
}
}
],
"owl:cardinality": "many"
},
"input": {
"description": "An input required to use the computational workflow (eg. Excel spreadsheet, BAM file)",
"oneOf": [
{
"@type": "bioschemas:FormalParameter",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
},
"required": []
},
{
"type": "array",
"items": {
"@type": "bioschemas:FormalParameter",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
},
"required": []
}
}
],
"owl:cardinality": "many"
},
"output": {
"description": "An output produced by the workflow",
"oneOf": [
{
"@type": "bioschemas:FormalParameter",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
},
"required": []
},
{
"type": "array",
"items": {
"@type": "bioschemas:FormalParameter",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
},
"required": []
}
}
],
"owl:cardinality": "many"
},
"softwareRequirements": {
"description": "Renaming schema.org/requirements as softwareRequirements. Component dependency requirements for application. This includes runtime environments and shared libraries that are not included in the application distribution package, but required to run the application (Examples: DirectX, Java or .NET runtime). Supersedes requirements. ",
"oneOf": [
{
"format": "uri",
"type": "string"
},
{
"type": "array",
"items": {
"format": "uri",
"type": "string"
}
},
{
"type": "string"
},
{
"type": "array",
"items": {
"type": "string"
}
}
],
"owl:cardinality": "many"
},
"programmingLanguage": {
"description": "The computer programming language.",
"anyOf": [
{
"type": "string"
},
{
"type": "array",
"items": {
"type": "string"
}
},
{
"@type": "ComputerLanguage",
"type": "object",
"properties": {
"name": {
"type": "string"
}
},
"required": []
},
{
"type": "array",
"items": {
"@type": "ComputerLanguage",
"type": "object",
"properties": {
"name": {
"type": "string"
}
},
"required": []
}
}
],
"owl:cardinality": "many"
},
"runtimePlatform": {
"description": "Runtime platform or script interpreter dependencies (Example - Java v1, Python2.3, .Net Framework 3.0).",
"oneOf": [
{
"type": "string"
},
{
"type": "array",
"items": {
"type": "string"
}
}
],
"owl:cardinality": "many"
},
"targetProduct": {
"description": "Target Operating System / Product to which the code applies. If applies to several versions, just the product name can be used.",
"oneOf": [
{
"@type": "SoftwareApplication",
"type": "object",
"properties": {
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
},
"required": []
},
{
"type": "array",
"items": {
"@type": "SoftwareApplication",
"type": "object",
"properties": {
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
},
"required": []
}
}
],
"owl:cardinality": "many"
},
"citation": {
"description": "A citation or reference to another creative work, such as another publication, web page, scholarly article, etc.",
"anyOf": [
{
"type": "string"
},
{
"type": "array",
"items": {
"type": "string"
}
},
{
"@type": "CreativeWork",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
},
"required": []
},
{
"type": "array",
"items": {
"@type": "CreativeWork",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
},
"required": []
}
}
],
"owl:cardinality": "many"
},
"conditionsOfAccess": {
"description": "Conditions that affect the availability of, or method(s) of access to, an item. Typically used for real world items such as an [[ArchiveComponent]] held by an [[ArchiveOrganization]]. This property is not suitable for use as a general Web access control mechanism. It is expressed only in natural language.\\n\\nFor example \"Available by appointment from the Reading Room\" or \"Accessible only from logged-in accounts \". ",
"owl:cardinality": "one",
"type": "string"
},
"contributor": {
"description": "A secondary contributor to the CreativeWork or Event.",
"anyOf": [
{
"@type": "Person",
"type": "object",
"properties": {
"affiliation": {
"@type": "Organization",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"alternateName": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
}
},
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
},
"required": [
"name"
]
},
{
"type": "array",
"items": {
"@type": "Person",
"type": "object",
"properties": {
"affiliation": {
"@type": "Organization",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"alternateName": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
}
},
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
},
"required": [
"name"
]
}
},
{
"@type": "Organization",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"alternateName": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
}
},
{
"type": "array",
"items": {
"@type": "Organization",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"alternateName": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
}
}
}
],
"owl:cardinality": "many"
},
"creativeWorkStatus": {
"description": "The status of a creative work in terms of its stage in a lifecycle. Example terms include Incomplete, Draft, Published, Obsolete. Some organizations define a set of terms for the stages of their publication lifecycle.",
"anyOf": [
{
"type": "string"
},
{
"type": "array",
"items": {
"type": "string"
}
},
{
"@type": "DefinedTerm",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
},
"termCode": {
"type": "string"
}
},
"required": []
},
{
"type": "array",
"items": {
"@type": "DefinedTerm",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
},
"termCode": {
"type": "string"
}
},
"required": []
}
}
],
"owl:cardinality": "many"
},
"creator": {
"description": "The creator/author of this CreativeWork. This is the same as the Author property for CreativeWork.",
"anyOf": [
{
"@type": "Person",
"type": "object",
"properties": {
"affiliation": {
"@type": "Organization",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"alternateName": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
}
},
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
},
"required": [
"name"
]
},
{
"type": "array",
"items": {
"@type": "Person",
"type": "object",
"properties": {
"affiliation": {
"@type": "Organization",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"alternateName": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
}
},
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
},
"required": [
"name"
]
}
},
{
"@type": "Organization",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"alternateName": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
}
},
{
"type": "array",
"items": {
"@type": "Organization",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"alternateName": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
}
}
}
],
"owl:cardinality": "many"
},
"dateCreated": {
"description": "The date on which the CreativeWork was created or the item was added to a DataFeed.",
"format": "date",
"owl:cardinality": "one",
"type": "string"
},
"dateModified": {
"description": "The date on which the CreativeWork was most recently modified or when the item's entry was modified within a DataFeed.",
"format": "date",
"owl:cardinality": "one",
"type": "string"
},
"datePublished": {
"description": "Date of first broadcast/publication.",
"format": "date",
"owl:cardinality": "one",
"type": "string"
},
"encodingFormat": {
"description": "Media type typically expressed using a MIME format (see [IANA site](http://www.iana.org/assignments/media-types/media-types.xhtml) and [MDN reference](https://developer.mozilla.org/en-US/docs/Web/HTTP/Basics_of_HTTP/MIME_types)) e.g. application/zip for a SoftwareApplication binary, audio/mpeg for .mp3 etc.).\n\nIn cases where a [[CreativeWork]] has several media type representations, [[encoding]] can be used to indicate each [[MediaObject]] alongside particular [[encodingFormat]] information.\n\nUnregistered or niche encoding and file formats can be indicated instead via the most appropriate URL, e.g. defining Web page or a Wikipedia/Wikidata entry.",
"oneOf": [
{
"format": "uri",
"type": "string"
},
{
"type": "array",
"items": {
"format": "uri",
"type": "string"
}
},
{
"type": "string"
},
{
"type": "array",
"items": {
"type": "string"
}
}
],
"owl:cardinality": "many"
},
"hasPart": {
"description": "Indicates an item or CreativeWork that is part of this item, or CreativeWork (in some sense).",
"oneOf": [
{
"@type": "CreativeWork",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
},
"required": []
},
{
"type": "array",
"items": {
"@type": "CreativeWork",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
},
"required": []
}
}
],
"owl:cardinality": "many"
},
"isBasedOn": {
"description": "A resource from which this work is derived or from which it is a modification or adaption.",
"oneOf": [
{
"@type": "Product",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
},
"required": []
},
{
"@type": "CreativeWork",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
},
"required": []
},
{
"format": "uri",
"type": "string"
}
],
"owl:cardinality": "one"
},
"keywords": {
"description": "Keywords or tags used to describe this content. Multiple entries in a keywords list are typically delimited by commas.",
"oneOf": [
{
"type": "string"
},
{
"type": "array",
"items": {
"type": "string"
}
}
],
"owl:cardinality": "many"
},
"license": {
"description": "A license document that applies to this content, typically indicated by URL.",
"anyOf": [
{
"format": "uri",
"type": "string"
},
{
"type": "array",
"items": {
"format": "uri",
"type": "string"
}
},
{
"@type": "CreativeWork",
"type": "object",
"properties": {
"identifier": {
"type": "string"
},
"name": {
"type": "string"
},
"url": {
"format": "uri",
"type": "string"
}
},
"required": []
},
{
"type": "array",
"items": {
"@type": "CreativeWork",
"type": "object",