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ontology_all.ttl
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@prefix : <https://w3id.org/enigma#> .
@prefix vaem: <http://www.linkedmodel.org/schema/vaem#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix terms: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix vann1: <https://w3id.org/enigma#vann:> .
@prefix vann: <http://purl.org/vocab/vann/> .
:hasBriefDescription
a owl:DatatypeProperty ;
rdfs:comment "Provides a brief description of the working group or project or cohort or image acquisition protocol"@en , "Provides a brief description of the working group or project or cohort"@en ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:Cohort :Project :WorkingGroup)
] ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:Cohort :Project :WorkingGroup)
] ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:Cohort :CohortGroup :CohortProject :ImageAcquisitionProtocol :Project :WorkingGroup)
] ;
rdfs:label "has brief description"@en ;
rdfs:range xsd:string ;
rdfs:subPropertyOf terms:description ;
vann:example "SZWG hasBriefDescription \"finds correlations between schizophrenia and other conditions\""@en , "SZCohort hasBriefDescription \"finds correlations between schizophrenia and other conditions\""@en , "ProjectSZ hasBriefDescription \"reports effect size for corticol thickness\""@en .
:hasName_Short
a owl:DatatypeProperty ;
rdfs:comment "A short name for the working group, in case the working group name is too long"@en ;
rdfs:domain :WorkingGroup ;
rdfs:label "has short name"@en ;
rdfs:range xsd:string ;
rdfs:subPropertyOf terms:title ;
vann:example "SchizophreniaWG hasName_Short SZWG"@en .
:isPartOfWorkingGroup
a owl:ObjectProperty ;
rdfs:comment "Property that indicates the cohorts which are a part of a working group"@en ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:Cohort :CohortGroup :CohortProject)
] ;
rdfs:label "is part of working group"@en ;
rdfs:range :WorkingGroup .
:rationale
a owl:AnnotationProperty .
<http://www.w3.org/2006/vcard/ns#locality>
a owl:DatatypeProperty ;
rdfs:comment "The locality (e.g. city or town) associated with the address of the object"@en ;
rdfs:domain :Address ;
rdfs:isDefinedBy <http://www.w3.org/2006/vcard/ns> ;
rdfs:label "locality"@en ;
rdfs:range xsd:string .
:hasCohort
a owl:ObjectProperty ;
rdfs:comment "Describes what cohorts are part of a project or working group"@en ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:Project :WorkingGroup)
] ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:Project :WorkingGroup)
] ;
rdfs:label "has cohort"@en ;
rdfs:range :Cohort ;
vann:example "BipolarWorkingGroup hasCohort AmsterdamBipolarCohort --> Bipolar Working Group includes the Amsterdam Bipolar Cohort"@en , "BipolarProject hasCohort AmsterdamBipolarCohort"@en .
:hasWorkingGroupMember
a owl:ObjectProperty ;
rdfs:comment "Describes who the members of the working group are"@en , "Describes what working group a person is a member of"@en ;
rdfs:domain :WorkingGroup ;
rdfs:label "has working group member"@en ;
rdfs:range :Person ;
rdfs:subPropertyOf <http://xmlns.com/foaf/0.1/member> ;
vann:example "BipolarWorkingGroup hasWorkingGroupMember JohnSmith"@en .
vaem:rationale
a owl:AnnotationProperty .
<http://www.w3.org/2006/vcard/ns#Address>
a owl:Class ;
rdfs:isDefinedBy <http://www.w3.org/2006/vcard/ns> ;
rdfs:label "Address"@en .
:hasFundingSource
a owl:DatatypeProperty ;
rdfs:comment "Describes the funding source of the cohort"@en ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:Cohort :CohortProject)
] ;
rdfs:label "has funding source"@en ;
rdfs:range xsd:string ;
vann:example "Cohort1 hasFundingSource \"NIMH, 5P50MH080272\""@en .
<http://www.w3.org/2006/vcard/ns#street-address>
a owl:DatatypeProperty .
:hasExclusionCriteria
a owl:DatatypeProperty ;
rdfs:comment "Criteria used to exclude cohort patients"@en ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:Cohort :CohortGroup :CohortProject)
] ;
rdfs:label "has exclusion criteria"@en ;
rdfs:range xsd:string .
:contributor
a owl:ObjectProperty ;
rdfs:comment "Property that indicates who is a contributor to a project or cohort"@en ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:AcademicArticle :Cohort :Project)
] ;
rdfs:label "contributor"@en ;
rdfs:range :Person ;
rdfs:subPropertyOf terms:contributor ;
vaem:rationale "Property added to restrict the domain to projects, cohorts and academic articles. This is done for facilitating the interaction with the wiki interface"@en .
<https://w3id.org/enigma#vann:example>
a owl:AnnotationProperty .
:GeneticDataType
a owl:Class ;
rdfs:comment "Specifies the kinds of genetic data collected"@en ;
rdfs:label "Genetic Data Type"@en ;
rdfs:subClassOf :DataType ;
vann:example "Epigenetic"@en .
:hasResearchInterest
a owl:DatatypeProperty ;
rdfs:comment "Describes a research interest of a person"@en ;
rdfs:domain :Person ;
rdfs:label "has research interest"@en ;
rdfs:range xsd:string ;
vann:example "JohnSmith hasReasearchInterest \"bipolar disorder\", \"schizophrenia\""@en .
:RespiratoryDisorder
a owl:Class ;
rdfs:comment "Disorders which affect the respiratory system"@en ;
rdfs:label "Respiratory Disorder"@en ;
rdfs:subClassOf :Disorder ;
vann:example "Asthma"@en .
:Organization
a owl:Class ;
rdfs:comment "An organization belonging to the ENIGMA consortium. Organization can be hospitals, universities, departments, etc."@en , "An organization contributing to a given ENIGMA project"@en ;
rdfs:isDefinedBy <http://xmlns.com/foaf/0.1> ;
rdfs:label "Organization"@en ;
vann:example "Information Sciences Institute"@en ;
<https://w3id.org/enigma#vann:example>
"Information Sciences Institute" .
:hasDiagnosticGroup
a owl:ObjectProperty ;
rdfs:comment "Describes the patient group of a cohort"@en ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:Cohort :CohortProject)
] ;
rdfs:label "has diagnostic group"@en ;
rdfs:range :CohortGroup ;
rdfs:subPropertyOf :hasCohortGroup ;
vann:example "BipolarCohort hasPatientGroup BipolarPatientGroup"@en .
<http://xmlns.com/foaf/0.1/Person>
a owl:Class ;
rdfs:isDefinedBy "http://xmlns.com/foaf/0.1/"@en ;
owl:equivalentClass :Person .
:isPublic
a owl:DatatypeProperty ;
rdfs:comment "Describes if a cohort's data is publicly available"@en ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:Cohort :CohortGroup :CohortProject)
] ;
rdfs:label "is public"@en ;
rdfs:range xsd:boolean ;
vann:example "SZCohort isPublic \"true\""@en .
:hasPersonRole_MainPrincipalInvestigator
a owl:ObjectProperty ;
rdfs:comment "Describes which cohorts somone is a main PI of"@en ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:Cohort :CohortGroup :CohortProject)
] ;
rdfs:label "has main person role principal investigator"@en ;
rdfs:range :Person ;
rdfs:subPropertyOf :hasPersonRole_PrincipalInvestigator ;
vann:example "Cohort1 hasMainPrincipalInvestigatorof JohnSmith"@en .
:Protocol
a owl:Class ;
rdfs:comment "An image processing or genetic analysis protocol used to extract brain feature data"@en ;
rdfs:label "Protocol"@en ;
vann:example "ENIGMA-Sulci Protocol"@en .
:usesScanner
a owl:DatatypeProperty ;
rdfs:comment "Describes the scanner used by the cohort"@en ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:Cohort :CohortGroup :CohortProject)
] ;
rdfs:label "uses scanner"@en ;
rdfs:range xsd:string ;
vann:example "SZCohort usesScanner \"1.5T-GE-Signa\""@en .
<https://schema.org/name>
a owl:DatatypeProperty ;
rdfs:isDefinedBy <https://schema.org> .
<https://w3id.org/enigma>
a owl:Ontology , owl:NamedIndividual ;
rdfs:comment "An ontology for describing people's roles in ENIGMA projects." ;
terms:contributor "Haripriya Dharmala" , "Yolanda Gil" , "Agnes McMahon" , "Daniel Garijo" ;
terms:creator "Michael Bornstein" , "Haripriya Dharmala" , "Ryan Espiritu" , "MiHyun Jang" , "Daniel Garijo" , "Neda Jahanshad" ;
terms:description "An ontology for describing the feature protocols used within ENIGMA."@en , "An ontology to describe cohorts of patients participating in ENIGMA projects."@en , "An ontology representing roles different persons play in ENIGMA projects, organizations, papers, or working groups."@en , "An ontology that describes ENIGMA projects and their properties."@en , "An ontology representing organizations that participate in the ENIGMA consortium."@en , "An ontology representing Working Groups that participate in the ENIGMA consortium."@en , "A cohort ontology that describes persons participating in ENIGMA and their properties."@en ;
terms:license <http://creativecommons.org/licenses/by/2.0/> ;
terms:title "The Protocol Ontology"@en , "The Project Ontology"@en , "The Roles Ontology"@en , "The Cohort Ontology"@en , "The Person Ontology" , "The Organization Ontology" , "The Working Group Ontology"@en ;
vann:preferredNamespacePrefix
"enigma" , <https://w3id.org/enigma> ;
vann:preferredNamespaceUri
: ;
owl:priorVersion <https://w3id.org/enigma/roles/1.0.0> , <https://w3id.org/enigma/organization/1.1.0> , "https://w3id.org/enigma/cohort/1.0.0" , <https://w3id.org/enigma/wg/1.0.0> , <https://w3id.org/enigma/person/1.0.0> ;
owl:versionIRI <https://w3id.org/enigma/cohort/1.1.0> , <https://w3id.org/enigma/roles/1.1.0> , <https://w3id.org/enigma/organization/1.1.0> , <https://w3id.org/enigma/project/1.1.0> , <https://w3id.org/enigma/person/1.1.0> , <https://w3id.org/enigma/protocol/1.0.0> , <https://w3id.org/enigma/wg/1.1.0> ;
owl:versionInfo "v1.0.0" , "v1.1.0" .
:hasWorkingGroupChair
a owl:ObjectProperty ;
rdfs:comment "Describes the working groups that someone is a chair of"@en , "Describes who the chairs of a working group are"@en ;
rdfs:domain :WorkingGroup ;
rdfs:label "has working group chair"@en ;
rdfs:range :Person ;
rdfs:subPropertyOf :hasWorkingGroupMember ;
vann:example "BipolarWorkingGroup hasWorkingGroupChair JohnSmith"@en , "SZWorkingGroup hasWorkingGroupChair JohnSmith"@en .
<https://schema.org/contentUrl>
a owl:DatatypeProperty ;
rdfs:isDefinedBy <https://schema.org/> .
:hasPersonRole_ProjectLead
a owl:ObjectProperty ;
rdfs:comment "Describes what project someone is a project lead of"@en ;
rdfs:domain :Project ;
rdfs:label "has project lead"@en ;
rdfs:range :Person ;
rdfs:subPropertyOf owl:topObjectProperty ;
vann:example "BipolarProject hasPersonRole_ProjectLead JohnSmith"@en .
:checksum
a owl:DatatypeProperty ;
rdfs:comment "checksum of data file to check if there are modifications" ;
rdfs:domain :DataDownload ;
rdfs:label "checksum" ;
rdfs:range xsd:string .
:MoodDisorder
a owl:Class ;
rdfs:comment "A mental health disorder defined by mood or behavioral swings"@en ;
rdfs:label "Mood Disorder"@en ;
rdfs:subClassOf :MentalHealthDisorder ;
vann:example "Bipolar Disorder"@en .
:DataDownload
a owl:Class ;
rdfs:comment "Dataset in downloadable form"@en ;
rdfs:label "Data Download"@en ;
rdfs:subClassOf <http://schema.org/DataDownload> .
:Methodology
a owl:Class ;
rdfs:comment "Working groups that develop protocols (imaging or genetics)"@en ;
rdfs:label "Methodology"@en ;
rdfs:subClassOf :WorkingGroup .
terms:isPartOf
a owl:ObjectProperty ;
rdfs:comment "A related resource in which the described resource is included." ;
rdfs:isDefinedBy terms: ;
rdfs:label "is Part of" .
<http://xmlns.com/foaf/0.1/member>
a owl:ObjectProperty ;
rdfs:comment "Indicates member of a group" ;
rdfs:isDefinedBy <http://xmlns.com/foaf/0.1/member> , <http://xmlns.com/foaf/0.1/> ;
rdfs:label "member" .
<http://schema.org/DataDownload>
a owl:Class ;
rdfs:isDefinedBy <http://schema.org> ;
rdfs:label "Data Download" .
:hasPublication
a owl:ObjectProperty ;
rdfs:comment "Property that links a project to a publication that resulted from it."@en ;
rdfs:domain :Project ;
rdfs:label "has publication"@en ;
rdfs:range :AcademicArticle .
:ClinicalPopulation
a owl:Class ;
rdfs:comment "Working groups that study clinical populations"@en ;
rdfs:label "Clinical Population"@en ;
rdfs:subClassOf :WorkingGroup .
:hasCohortGroup
a owl:ObjectProperty ;
rdfs:comment "Property that indicates the cohort groups part of a cohort"@en ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:Cohort :CohortProject)
] ;
rdfs:label "has cohort group"@en ;
rdfs:range :CohortGroup ;
vann:example "QTIM has cohort group QTIM_control"@en .
<http://vivoweb.org/ontology/core#orcidId>
a owl:ObjectProperty ;
rdfs:comment "This is now an object property where the object value is a resource of the form <http://orcid.org/NNNN-NNNN-NNNN-NNNN>. This is to support connecting VIVO and ORCID in the linked data web. Note: a person can have multiple ORCID iDs."^^xsd:string ;
rdfs:isDefinedBy "http://vivoweb.org/ontology/core#"@en .
:hasPersonRole_DataAnalyst
a owl:ObjectProperty ;
rdfs:comment "Describes what project someone is a data analyst of"@en ;
rdfs:domain :Project ;
rdfs:label "has data analyst"@en ;
rdfs:range :Person ;
rdfs:subPropertyOf :contributor ;
vann:example "BipolarProject hasPersonRole_DataAnalyst JohnSmith"@en .
<http://xmlns.com/foaf/0.1/familyName>
a owl:DatatypeProperty ;
rdfs:comment "The family name of some person." ;
rdfs:domain <http://xmlns.com/foaf/0.1/Person> ;
rdfs:isDefinedBy "http://xmlns.com/foaf/0.1/"@en .
:Location
a owl:Class ;
rdfs:comment "Geographic location of the cohort"@en ;
rdfs:label "Location"@en ;
vann:example "Los Angeles, California"@en .
:GeneticStudy
a owl:Class ;
rdfs:comment "Working groups dedicated to genetic analysis"@en ;
rdfs:label "Genetic study"@en ;
rdfs:subClassOf :WorkingGroup .
:hasPublishedPaper
a owl:DatatypeProperty ;
rdfs:comment "Describes the links to published papers or the paper title (if link does not exist) for the working group"@en ;
rdfs:domain :WorkingGroup ;
rdfs:label "has published paper"@en ;
rdfs:range xsd:string ;
rdfs:subPropertyOf owl:topDataProperty ;
vann:example "WorkingGroup2 hasPublishedPaper \"Article Title\""@en , "WorkingGroup1 hasPublishedPaper www.publishedpaperexample.com"@en .
:CohortProject
a owl:Class ;
rdfs:comment "The subset of the individuals from a Cohort, which are used as samples for a specific project"@en ;
rdfs:label "Cohort Project"@en ;
rdfs:subClassOf :Cohort ;
vann:example "\"Healthy\" individuals from the ASRB Cohort were sampled to form a Cohort Project of SZCorticol"@en .
:hasCohortProject
a owl:ObjectProperty ;
rdfs:comment "Describes the subcohorts, specific to a given project, that are part of that cohort"@en ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:Cohort :CohortGroup :ImageAcquisitionProtocol)
] ;
rdfs:label "has cohort project"@en ;
rdfs:range :CohortProject ;
vann:example "BipolarCohort hasCohortProject BipolarBarcelonaCohort"@en .
vann:preferredNamespaceUri
a owl:AnnotationProperty .
:hasGrant
a owl:DatatypeProperty ;
rdfs:comment "Data property that aims to capture the grants that have been obtained by a person, in order to properly list them in the acknowledgements of the corresponding publication"@en ;
rdfs:domain :Person ;
rdfs:label "has grant"@en ;
rdfs:range xsd:string ;
vann:example "John Smith hasGrant \"U54EB020403 (NIH)\""@en .
<http://xmlns.com/foaf/0.1/mbox>
a owl:ObjectProperty ;
rdfs:comment "A personal mailbox, ie. an Internet mailbox associated with exactly one owner, the first owner of this mailbox. This is a 'static inverse functional property', in that there is (across time and change) at most one individual that ever has any particular value for foaf:mbox." ;
rdfs:domain <http://xmlns.com/foaf/0.1/Person> ;
rdfs:isDefinedBy "http://xmlns.com/foaf/0.1/"@en ;
rdfs:range owl:Thing .
:hasStudyDesign
a owl:DatatypeProperty ;
rdfs:comment """Describes the study design of the cohort group or project (Case/control; Population; Healthy only; Patients only)
NOTE: study design options are mutually exclusive for Cohort Groups but not Projects"""@en , """Describes the study design of a project (Case/control; Population; Healthy only; Patients only)
NOTE: study design options are mutually exclusive for Cohort Groups but not Projects"""@en ;
rdfs:domain :Project ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:CohortGroup :Project)
] ;
rdfs:label "has study design"@en ;
rdfs:range xsd:string ;
vann:example "Project1 hasStudyDesign \"Case/control, Population\""@en , "CohortGroup1 hasStudyDesign \"Population\""@en .
:hasGeneticDataType
a owl:ObjectProperty ;
rdfs:comment "Describes the genetic data types that were collected for a cohort or project"@en ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:Cohort :CohortGroup :CohortProject)
] ;
rdfs:label "has genetic data type"@en ;
rdfs:range :GeneticDataType ;
rdfs:subPropertyOf :hasDataType ;
vann:example "Cohort1 hasGeneticDataType epigenetic"@en .
:isPartOfProject
a owl:ObjectProperty ;
rdfs:comment "Property that indicates the cohort groups specific to a project"@en ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:CohortGroup :CohortProject)
] ;
rdfs:label "is part of project"@en ;
rdfs:range :Project .
:MentalHealthDisorder
a owl:Class ;
rdfs:comment "Disorders which can affect mood, behavior, and thinking"@en ;
rdfs:label "Mental Health Disorder"@en ;
rdfs:subClassOf :Disorder ;
vann:example "OCD"@en .
<http://www.w3.org/2006/vcard/ns#country-name>
a owl:DatatypeProperty .
:City
a owl:Class ;
rdfs:comment "City in which a cohort is located"@en ;
rdfs:label "City"@en ;
rdfs:subClassOf :Location ;
vann:example "Los Angeles"@en .
:SubstanceDependence
a owl:Class ;
rdfs:comment "A subset of substance abuse in which symptoms of withdrawal may appeared after reduction of substance use"@en ;
rdfs:label "Substance Dependence"@en ;
rdfs:subClassOf :SubstanceAbuse ;
vann:example "Alcohol Dependence"@en .
:hasContentUrl
a owl:DatatypeProperty ;
rdfs:comment "Points to a media object, like an image or video file" ;
rdfs:domain :DataDownload ;
rdfs:label "has content URL" ;
rdfs:range xsd:anyURI ;
rdfs:subPropertyOf <https://schema.org/contentUrl> .
:hasNumberOfFemaleSex
a owl:DatatypeProperty ;
rdfs:comment "Describing the number of females in a cohort project"@en ;
rdfs:domain :CohortProject ;
rdfs:label "has number of females"@en ;
rdfs:range xsd:nonNegativeInteger ;
vann:example "CohortGroup2 hasNumberOfFemaleSex 16"@en .
:NeurologicalDisorder
a owl:Class ;
rdfs:comment "Disorders which affect the nervous system"@en ;
rdfs:label "Neurological Disorder"@en ;
rdfs:subClassOf :Disorder ;
vann:example "Epilepsy"@en .
<http://www.w3.org/2006/vcard/ns#region>
a owl:DatatypeProperty .
:hasCurrentJobTitle
a owl:DatatypeProperty ;
rdfs:comment "Data property that aims to capture the current job title of a person. Examples are student, faculty, staff, postdoc, etc."@en ;
rdfs:domain :Person ;
rdfs:label "has current job title"@en ;
rdfs:range xsd:string ;
vann:example "JohnSmith hasCurrentJobTitle \"Postdoc\""@en .
:hasAdditionalDemographic
a owl:DatatypeProperty ;
rdfs:comment "Describes the additional demographics defining a given cohort"@en ;
rdfs:domain :Cohort ;
rdfs:label "has additional demographic"@en ;
rdfs:range xsd:string ;
vann:example "CohortGroup1 hasAdditionalDemographic \"handedness, IQ\""@en .
:SubstanceAbuse
a owl:Class ;
rdfs:comment "A mental health disorder defined by the overusage or abuse of a substance"@en ;
rdfs:label "Substance Abuse"@en ;
rdfs:subClassOf :MentalHealthDisorder ;
vann:example "Alcoholism"@en .
:hasDate_DataContributionDeadline
a owl:DatatypeProperty ;
rdfs:comment "Describes the deadline date for data contribution of a project"@en ;
rdfs:domain :Project ;
rdfs:label "has data contribution deadline date"@en ;
rdfs:range xsd:date .
<http://vivoweb.org/ontology/core#College>
a owl:Class ;
rdfs:comment "A college contributing to a given ENIGMA project"@en ;
rdfs:isDefinedBy <http://vivoweb.org/ontology/core> ;
rdfs:label "College"@en ;
rdfs:subClassOf <http://xmlns.com/foaf/0.1/Organization> ;
vann:example "Los Angeles City College"@en .
:hasCollectionSite
a owl:DatatypeProperty ;
rdfs:comment "Describes where the data of the cohort was collected"@en ;
rdfs:domain :Cohort ;
rdfs:label "has collection site"@en ;
rdfs:range xsd:string ;
vann:example "Cohort1 hasCollectionSite Toronto"@en .
:hasCountry
a owl:DatatypeProperty ;
rdfs:comment "The country name associated with the address of the object"@en ;
rdfs:domain :Address ;
rdfs:label "has country"@en ;
rdfs:range xsd:string ;
rdfs:subPropertyOf <http://www.w3.org/2006/vcard/ns#country-name> .
:Address
a owl:Class ;
rdfs:comment "To specify the components of the delivery address for the object"@en ;
rdfs:label "Address"@en ;
rdfs:subClassOf <http://www.w3.org/2006/vcard/ns#Address> .
:WorkingGroup
a owl:Class ;
rdfs:comment "Group of researchers studying a certain topic/disease"@en ;
rdfs:label "Working Group"@en ;
vann:example "BipolarWG"@en .
:AnxietyDisorder
a owl:Class ;
rdfs:comment "A mental health disorder defined by feelings of anxiety, fear, or worry"@en ;
rdfs:label "Anxiety Disorder"@en ;
rdfs:subClassOf :MentalHealthDisorder ;
vann:example "PTSD"@en .
xsd:gYear
a rdfs:Datatype .
:hasNumberOfParticipants
a owl:DatatypeProperty ;
rdfs:comment "Describes the number of participants in a cohort group or cohort project"@en ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:CohortGroup :CohortProject)
] ;
rdfs:label "has number of participants"@en ;
rdfs:range xsd:int ;
vann:example "CohortGroup2 hasNumberOfParticipants 200"@en .
<http://vivoweb.org/ontology/core#Hospital>
a owl:Class ;
rdfs:comment "A hospital contributing to a given ENIGMA project"@en ;
rdfs:isDefinedBy <http://vivoweb.org/ontology/core> ;
rdfs:label "Hospital"@en ;
rdfs:subClassOf <http://xmlns.com/foaf/0.1/Organization> ;
vann:example "Children's Hospital Los Angeles"@en .
:DataType
a owl:Class ;
rdfs:comment "Specifies the kinds of data collected"@en ;
rdfs:label "Data Type"@en .
:hasMemorandumOfUnderstanding
a owl:DatatypeProperty ;
rdfs:comment "Describes the memorandum of understanding links of the working group"@en ;
rdfs:domain :WorkingGroup ;
rdfs:label "has memorandum of understanding"@en ;
rdfs:range xsd:string ;
vann:example "WorkingGroup1 hasMemorandumOfUnderstanding www.mouexample.com"@en .
<http://xmlns.com/foaf/0.1/givenName>
a owl:DatatypeProperty ;
rdfs:comment "The given name of some person."@en ;
rdfs:domain <http://xmlns.com/foaf/0.1/Person> ;
rdfs:isDefinedBy <http://xmlns.com/foaf/0.1/> .
:hasDegree
a owl:DatatypeProperty ;
rdfs:comment "Describes what degree a person has (e.g., BsC, PhD, etc.)"@en ;
rdfs:domain :Person ;
rdfs:label "has degree"@en ;
rdfs:range xsd:string ;
vann:example "JohnSmith hasDegree PhD"@en .
:hasDate_ProposalApproval
a owl:DatatypeProperty ;
rdfs:comment "Describes the date the proposal for a project was approved"@en ;
rdfs:domain :Project ;
rdfs:label "has proposal approval date"@en ;
rdfs:range xsd:date .
:hasNumberOfMaleSex
a owl:DatatypeProperty ;
rdfs:comment "Describing the number of males in a cohort project"@en ;
rdfs:domain :CohortProject ;
rdfs:label "has number of males"@en ;
rdfs:range xsd:nonNegativeInteger ;
vann:example "CohortGroup2 hasNumberOfMaleSex 12"@en .
<http://xmlns.com/foaf/0.1/Organization>
a owl:Class ;
rdfs:comment "An organization contributing to a given ENIGMA project"@en ;
rdfs:isDefinedBy <http://xmlns.com/foaf/0.1> ;
owl:equivalentClass :Organization .
<http://xmlns.com/foaf/0.1/homepage>
a owl:ObjectProperty ;
rdfs:comment "A homepage for some thing." ;
rdfs:isDefinedBy <http://xmlns.com/foaf/0.1/> ;
rdfs:label "homepage" .
:OrganicMedicalDisorder
a owl:Class ;
rdfs:comment "Disorder characterized by decreased mental function due to a medical or physical disease"@en ;
rdfs:label "Organic Medical Disorder"@en ;
rdfs:subClassOf :Disorder ;
vann:example "Delirium"@en .
:requiresDataType
a owl:ObjectProperty ;
rdfs:comment "Describes which data type is required by a project"@en ;
rdfs:domain :Project ;
rdfs:label "requires data type"@en ;
rdfs:range :DataType .
:hasMiddleInitial
a owl:DatatypeProperty ;
rdfs:comment "Describes middle initial of a person" ;
rdfs:domain :Person ;
rdfs:label "has middle initial"@en ;
rdfs:range xsd:string ;
vann:example "John A Smith hasMiddleInitial \"A\"" .
vann:preferredNamespacePrefix
a owl:AnnotationProperty .
terms:contributor
a owl:AnnotationProperty , owl:ObjectProperty ;
rdfs:isDefinedBy terms:contributor .
:hasSpecies
a owl:DatatypeProperty ;
rdfs:comment "Describes the species of the subjects of a cohort (Humans, Chimps, Mice, etc.)"@en ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:Cohort :CohortGroup :CohortProject)
] ;
rdfs:label "has species"@en ;
rdfs:range xsd:string ;
vann:example "Cohort1 hasSpecies \"humans\""@en .
:hasPersonRole_ProtocolRunner
a owl:ObjectProperty ;
rdfs:comment "Describes who ran a protocol for a given cohort"@en ;
rdfs:domain :Project ;
rdfs:label "has protocol runner"@en ;
rdfs:range :Person ;
rdfs:subPropertyOf :contributor ;
vann:example "BipolarProject hasPersonRole_ProtocolRunner JohnSmith"@en .
:hasConflictOfInterest
a owl:ObjectProperty ;
rdfs:comment "Property linking an author with a conflict of interest that the author has on a paper"@en ;
rdfs:domain :Person ;
rdfs:label "has conflict of interest"@en ;
rdfs:range :ConflictOfInterest .
:DiagnosticInstrument
a owl:Class ;
rdfs:comment "The method used to diagnose individuals in a Cohort"@en ;
rdfs:label "Diagnostic Instrument"@en ;
vann:example "Consensus Consultant Diagnosis"@en .
:isActive
a owl:DatatypeProperty ;
rdfs:comment "Describes whether a project is active"@en ;
rdfs:domain :Project ;
rdfs:label "is Active"@en ;
rdfs:range xsd:string .
<http://vivoweb.org/ontology/core#Consortium>
a owl:Class ;
rdfs:comment "A consortium contributing to a given ENIGMA project"@en ;
rdfs:isDefinedBy <http://vivoweb.org/ontology/core> ;
rdfs:label "Consortium"@en ;
rdfs:subClassOf <http://xmlns.com/foaf/0.1/Organization> ;
vann:example "ENIGMA"@en .
:hasPersonRole_ProjectContact
a owl:ObjectProperty ;
rdfs:comment "Property that points to the person that is a contact for the project or cohort"@en ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:Cohort :Project)
] ;
rdfs:label "has contact"@en ;
rdfs:range :Person ;
rdfs:subPropertyOf owl:topObjectProperty ;
vann:example "BipolarCohort hasPersonRole_ProjectContact JohnSmith"@en .
:BrainScanDataType
a owl:Class ;
rdfs:comment "Specifies the kinds of brain scan data collected"@en ;
rdfs:label "Brain Scan Data Type"@en ;
rdfs:subClassOf :DataType ;
vann:example "EEG"@en .
:studiesDisorder
a owl:ObjectProperty ;
rdfs:comment "Property that indicates which project/working group studies which disorder"@en ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:Project :WorkingGroup)
] ;
rdfs:label "studies disorder"@en ;
rdfs:range :Disorder .
:hasDataset
a owl:ObjectProperty ;
rdfs:comment "Property that links a cohort project with the data being described."@en ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:Cohort :CohortProject)
] ;
rdfs:label "has dataset"@en ;
rdfs:range :Dataset .
:hasName
a owl:DatatypeProperty ;
rdfs:comment "Name of an item" ;
rdfs:domain :Dataset ;
rdfs:label "has name" ;
rdfs:range xsd:string ;
rdfs:subPropertyOf <https://schema.org/name> .
:usesProtocol
a owl:ObjectProperty ;
rdfs:comment "Describes which protocol was used in a project"@en ;
rdfs:domain :Project ;
rdfs:label "uses protocol"@en ;
rdfs:range :Protocol ;
vann:example "BipolarProject usesProtocol ENIGMA-SulciProtocol"@en .
:ImageAcquisitionProtocol
a owl:Class ;
rdfs:comment "Procedure used to collect image data within the cohort"@en ;
rdfs:label "Image Acquisition Protocol"@en ;
vann:example "ENIGMA-Sulci"@en .
xsd:date
a rdfs:Datatype .
<http://vivoweb.org/ontology/core#Department>
a owl:Class ;
rdfs:comment "A department contributing to a given ENIGMA project"@en ;
rdfs:isDefinedBy <http://vivoweb.org/ontology/core> ;
rdfs:label "Department"@en ;
rdfs:subClassOf <http://xmlns.com/foaf/0.1/Organization> ;
vann:example "Department of Psychology, USC"@en .
:hasDate_TargetStart
a owl:DatatypeProperty ;
rdfs:comment "Describes the start date of the target period of the project"@en ;
rdfs:domain :Project ;
rdfs:label "has target start date"@en ;
rdfs:range xsd:date .
<http://vivoweb.org/ontology/core#University>
a owl:Class ;
rdfs:comment "A university contributing to a given ENIGMA project"@en ;
rdfs:isDefinedBy <http://vivoweb.org/ontology/core> ;
rdfs:label "University"@en ;
rdfs:subClassOf <http://xmlns.com/foaf/0.1/Organization> ;
vann:example "USC"@en .
:Dataset
a owl:Class ;
rdfs:comment "A dataset containing information about an ENIGMA project cohort"@en ;
rdfs:label "Dataset"@en ;
rdfs:subClassOf <http://schema.org/Dataset> .
:AcademicArticle
a owl:Class ;
rdfs:comment "An academic article, submitted as a result of the work in an ENIGMA project"@en ;
rdfs:label "Academic article"@en .
:hasContact
a owl:ObjectProperty ;
rdfs:comment "Property that points to the person that is a contact for the project or cohort"@en , "Describes who to contact for inquiries about the protocol"@en ;
rdfs:domain :Protocol ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:Cohort :CohortGroup :CohortProject)
] ;
rdfs:label "has contact"@en ;
rdfs:range :Person ;
vann:example "ENIGMA-SulciProtocol hasContact JohnSmith"@en , "BipolarCohort hasContact JohnSmith"@en .
:hasEmail
a owl:ObjectProperty ;
rdfs:comment "Property that indicates which is the email of a person"@en ;
rdfs:domain :Person ;
rdfs:label "has email"@en ;
rdfs:range owl:Thing ;
rdfs:subPropertyOf <http://xmlns.com/foaf/0.1/mbox> ;
vaem:rationale "Property added to facilitate interaction with domain and ranges in the wiki. It's equivalent to foaf:mbox"@en .
:hasFamilyName
a owl:DatatypeProperty ;
rdfs:comment "The family name of some person."@en ;
rdfs:domain :Person ;
rdfs:label "has family name"@en ;
rdfs:range xsd:string ;
rdfs:subPropertyOf <http://xmlns.com/foaf/0.1/familyName> ;
vaem:rationale "Property added to restrict the domain to enigma:Person. This is done for facilitating the interaction with the wiki interface"@en .
:CohortGroup
a owl:Class ;
rdfs:comment "A subset of Cohort, which either forms the patient group or control group"@en ;
rdfs:label "Cohort Group"@en ;
rdfs:subClassOf :Cohort ;
vann:example "AMCControlGroup is a control cohort group of the AMC cohort"@en .
:Disorder
a owl:Class ;
rdfs:comment "A disorder/disease experienced by members of a cohort"@en ;
rdfs:label "Disorder"@en .
:hasProject
a owl:ObjectProperty ;
rdfs:comment "Describes what projects are worked on by a specific working group"@en ;
rdfs:domain :WorkingGroup ;
rdfs:label "has project"@en ;
rdfs:range :Project ;
vann:example "BipolarWorkingGroup hasProject BipolarCorticolProject --> The Bipolar Working Group is working on the Bipolar Corticol Project"@en .
:CardiovascularDisorder
a owl:Class ;
rdfs:comment "A subset of vascular disorders affecting the heart"@en ;
rdfs:label "Cardiovascular Disorder"@en ;
rdfs:subClassOf :VascularDisorder ;
vann:example "Coronary Artery Disease"@en .
<http://www.w3.org/2006/vcard/ns#postal-code>
a owl:DatatypeProperty .
:ConflictOfInterest
a owl:Class ;
rdfs:comment "Concept used to represent a conflict of interest of an author in a paper"@en ;
rdfs:label "Conflict of interest"@en .
:hasCohortStatus
a owl:DatatypeProperty ;
rdfs:comment "Describes the current status of a cohort, cohort group or cohort project"@en ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:Cohort :CohortGroup :CohortProject)
] ;
rdfs:label "has cohort status"@en ;
rdfs:range
[ a rdfs:Datatype ;
owl:oneOf
[ a rdf:List ;
rdf:first "gathering participants" ;
rdf:rest
[ a rdf:List ;
rdf:first "protocol preparation" ;
rdf:rest
[ a rdf:List ;
rdf:first "published" ;
rdf:rest
[ a rdf:List ;
rdf:first "revision" ;
rdf:rest ()
]
]
]
]
] ;
vann:example "CohortGroup1 hasCohortStatus published"@en .
terms:description
a owl:DatatypeProperty , owl:AnnotationProperty .
vann:example
a owl:AnnotationProperty .
:InfectiousDisorder
a owl:Class ;
rdfs:comment "A disease or disorder caused by the invasion of microorganisms"@en ;
rdfs:label "Infectious Disorder"@en ;
rdfs:subClassOf :Disorder ;
vann:example "HIV"@en .
:hasStatistics
a owl:ObjectProperty ;
rdfs:comment "Property used to link a cohort with the summary statistics that may have been produced after applying a given protocol"@en ;
rdfs:domain :CohortProject ;
rdfs:label "has statistics"@en ;
rdfs:range :Dataset .
<http://vivoweb.org/ontology/core#Institute>
a owl:Class ;
rdfs:comment "An institute contributing to a given ENIGMA project"@en ;
rdfs:isDefinedBy <http://vivoweb.org/ontology/core> ;
rdfs:label "Institute"@en ;
rdfs:subClassOf <http://xmlns.com/foaf/0.1/Organization> ;
vann:example "Information Sciences Institute"@en .
:hasImageAcquisitionProtocol
a owl:ObjectProperty ;
rdfs:comment "Describes the acquisition protocol that was used to scan the data of a cohort"@en ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:Cohort :CohortGroup :CohortProject)
] ;
rdfs:label "has image acquisition protocol"@en ;
rdfs:range :ImageAcquisitionProtocol ;
vann:example "Cohort1 hasImageAcquisitionProtocol AcquisitionProtocol1"@en .
:hasAffiliate
a owl:ObjectProperty ;
rdfs:comment "Describes the organization's affiliates"@en ;
rdfs:domain :Organization ;
rdfs:label "has affiliate"@en ;
rdfs:range :Person ;
rdfs:subPropertyOf <http://xmlns.com/foaf/0.1/member> ;
vann:example "HarvardU hasAffiliate JohnSmith"@en .
:hasDescription
a owl:DatatypeProperty ;
rdfs:comment "Description of an item" , "A brief description of a protocol"@en ;
rdfs:domain :Protocol , :Dataset ;
rdfs:label "has description" , "has description"@en ;
rdfs:range xsd:string ;
rdfs:subPropertyOf <https://schema.org/description> ;
vann:example "ENIGMA-Sulci hasDescription \"This protocol allows you to segment, label, and visually inspect 123 cortical sulci/subject using FreeSurfer, BrainVISA, R and ImageMagick.\""@en .
:hasTotalNumberOfParticipants
a owl:DatatypeProperty ;
rdfs:comment "Describes the total number of participants in the cohort"@en ;
rdfs:domain :Cohort ;
rdfs:label "has total number of participants"@en ;
rdfs:range xsd:positiveInteger ;
vann:example "Cohort1 hasTotalNumberOfParticipants 500 --> Cohort1 is made up of approximately 500 patients"@en .
:hasGivenName
a owl:DatatypeProperty ;
rdfs:comment "The given name of some person."@en ;
rdfs:domain :Person ;
rdfs:label "has given name"@en ;
rdfs:range xsd:string ;
rdfs:subPropertyOf <http://xmlns.com/foaf/0.1/givenName> ;
vaem:rationale "Property added to restrict the domain to enigma:Person. This is done for facilitating the interaction with the wiki interface"@en .
:hasEthnicGroup
a owl:DatatypeProperty ;
rdfs:comment "Describes the ethnic group that the participants of the cohort are in"@en ;
rdfs:domain
[ a owl:Class ;
owl:unionOf (:Cohort :CohortProject)
] ;
rdfs:label "has ethnic group"@en ;
rdfs:range
[ a rdfs:Datatype ;
owl:oneOf
[ a rdf:List ;
rdf:first "African American" ;
rdf:rest
[ a rdf:List ;