From e9cf9123b99001d23e099c107c87d70d3472b44a Mon Sep 17 00:00:00 2001 From: Jenifer Tabita Ciuciu-Kiss Date: Fri, 13 Dec 2024 06:20:06 +0100 Subject: [PATCH 01/31] download script --- experiments/archivo_ontologies.txt | 1817 ++++++++++++++++++++++++++++ experiments/download_ontologies.py | 96 ++ 2 files changed, 1913 insertions(+) create mode 100644 experiments/archivo_ontologies.txt create mode 100644 experiments/download_ontologies.py diff --git a/experiments/archivo_ontologies.txt b/experiments/archivo_ontologies.txt new file mode 100644 index 0000000..31fb38c --- /dev/null +++ b/experiments/archivo_ontologies.txt @@ -0,0 +1,1817 @@ +http://babelnet.org/rdf/ +http://bag.basisregistraties.overheid.nl/def/bag +http://bblfish.net/work/atom-owl/2006-06-06/ +http://brk.basisregistraties.overheid.nl/def/brk +http://brt.basisregistraties.overheid.nl/def/top10nl +http://brt.basisregistraties.overheid.nl/id/begrippenkader/top10nl +http://buzzword.org.uk/rdf/personal-link-types# 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+https://www.omg.org/spec/LCC/Languages/LanguageRepresentation/ +https://www.w3.org/2019/wot/hypermedia# +https://www.w3.org/2019/wot/json-schema# +https://www.w3.org/2019/wot/security# +https://www.w3.org/2019/wot/td# +https://www.w3.org/ns/i18n +https://www.w3.org/ns/ldt# +https://www.w3id.org/simulation/ontology/ \ No newline at end of file diff --git a/experiments/download_ontologies.py b/experiments/download_ontologies.py new file mode 100644 index 0000000..e12f661 --- /dev/null +++ b/experiments/download_ontologies.py @@ -0,0 +1,96 @@ +import os +import requests +import json +from urllib.parse import urlparse + +def ensure_directory(path): + """Ensure the directory exists.""" + if not os.path.exists(path): + os.makedirs(path) + +def save_file(content, file_path): + """Save content to a file.""" + with open(file_path, "wb") as file: + file.write(content) + +def read_ontologies_from_file(file_path): + """Read ontology URLs from a file where each line is an ontology URL.""" + if not os.path.exists(file_path): + raise FileNotFoundError(f"The file {file_path} does not exist.") + + with open(file_path, "r") as file: + return [line.strip() for line in file if line.strip()] + +def download_ontology(url, formats, base_folder): + """Download an ontology in specified formats and log details.""" + ontology_info = { + "url": url, + "downloads": {}, + } + + headers = { + "Accept": "", + } + + for format_name, mime_type in formats.items(): + try: + headers["Accept"] = mime_type + response = requests.get(url, headers=headers, timeout=30) + + if response.status_code == 200: + parsed_url = urlparse(url) + ontology_name = os.path.basename(parsed_url.path) or "ontology" + ontology_url = url.replace('/', '_').replace(':', '_').replace('.', '_') + filename = f"{ontology_url}.{format_name}" + folder_path = os.path.join(base_folder, format_name) + ensure_directory(folder_path) + file_path = os.path.join(folder_path, filename) + + save_file(response.content, file_path) + + ontology_info["downloads"][format_name] = { + "status_code": response.status_code, + "headers": dict(response.headers), + "file_path": file_path, + } + else: + ontology_info["downloads"][format_name] = { + "status_code": response.status_code, + "error": "Failed to fetch the ontology", + } + + except Exception as e: + ontology_info["downloads"][format_name] = { + "error": str(e), + } + + return ontology_info + +def main(): + ontology_file = "archivo_ontologies.txt" + urls = read_ontologies_from_file(ontology_file) + + formats = { + "ttl": "text/turtle", + "nt": "application/n-triples", + "rdfxml": "application/rdf+xml", + } + + base_folder = "downloads" + ensure_directory(base_folder) + + log = [] + + for url in urls: + print(f'URL: {url}') + ontology_log = download_ontology(url, formats, base_folder) + log.append(ontology_log) + + log_file = os.path.join(base_folder, "download_log.json") + with open(log_file, "w") as file: + json.dump(log, file, indent=4) + + print(f"Download complete. Log saved to {log_file}") + +if __name__ == "__main__": + main() From bb734c188e90f95c195afcdfcc710886dda36d3c Mon Sep 17 00:00:00 2001 From: Jenifer Tabita Ciuciu-Kiss Date: Fri, 13 Dec 2024 06:23:45 +0100 Subject: [PATCH 02/31] example log file --- experiments/downloads/download_log.json | 75 +++++++++++++++++++++++++ 1 file changed, 75 insertions(+) create mode 100644 experiments/downloads/download_log.json diff --git a/experiments/downloads/download_log.json b/experiments/downloads/download_log.json new file mode 100644 index 0000000..0a6c210 --- /dev/null +++ b/experiments/downloads/download_log.json @@ -0,0 +1,75 @@ +[ + { + "url": "http://babelnet.org/rdf/", + "downloads": { + "ttl": { + "status_code": 503, + "error": "Failed to fetch the ontology" + }, + "nt": { + "status_code": 503, + "error": "Failed to fetch the ontology" + }, + "rdfxml": { + "status_code": 503, + "error": "Failed to fetch the ontology" + } + } + }, + { + "url": "http://bag.basisregistraties.overheid.nl/def/bag", + "downloads": { + "ttl": { + "status_code": 200, + "headers": { + "vary": "Origin,Access-Control-Request-Method,Access-Control-Request-Headers", + "x-envoy-upstream-service-time": "21", + "Set-Cookie": "b92febf50d71b9ccc8184dfcf4ae480b=8bb862a4db465e2ec78dc36e4519d647; Path=/def; HttpOnly; Domain=bag.basisregistraties.overheid.nl", + "Strict-Transport-Security": "max-age=31536000; includeSubDomains; preload", + "Content-Encoding": "gzip", + "Content-Type": "text/turtle", + "Transfer-Encoding": "chunked", + "Date": "Fri, 13 Dec 2024 05:21:18 GMT", + "Keep-Alive": "timeout=20", + "Connection": "keep-alive", + "Server": "unspecified" + }, + "file_path": "downloads/ttl/http___bag_basisregistraties_overheid_nl_def_bag.ttl" + }, + "nt": { + "status_code": 200, + "headers": { + "vary": "Origin,Access-Control-Request-Method,Access-Control-Request-Headers", + "x-envoy-upstream-service-time": "15", + "Set-Cookie": "b92febf50d71b9ccc8184dfcf4ae480b=590194453cdff47017f98c1dc79192d7; Path=/def; HttpOnly; Domain=bag.basisregistraties.overheid.nl", + "Strict-Transport-Security": "max-age=31536000; includeSubDomains; preload", + "Content-Encoding": "gzip", + "Content-Type": "application/n-triples", + "Transfer-Encoding": "chunked", + "Date": "Fri, 13 Dec 2024 05:21:18 GMT", + "Keep-Alive": "timeout=20", + "Connection": "keep-alive", + "Server": "unspecified" + }, + "file_path": "downloads/nt/http___bag_basisregistraties_overheid_nl_def_bag.nt" + }, + "rdfxml": { + "status_code": 200, + "headers": { + "vary": "Origin,Access-Control-Request-Method,Access-Control-Request-Headers", + "x-envoy-upstream-service-time": "11", + "Set-Cookie": "b92febf50d71b9ccc8184dfcf4ae480b=590194453cdff47017f98c1dc79192d7; Path=/def; HttpOnly; Domain=bag.basisregistraties.overheid.nl", + "Strict-Transport-Security": "max-age=31536000; includeSubDomains; preload", + "Content-Encoding": "gzip", + "Content-Type": "application/rdf+xml", + "Transfer-Encoding": "chunked", + "Date": "Fri, 13 Dec 2024 05:21:19 GMT", + "Keep-Alive": "timeout=20", + "Connection": "keep-alive", + "Server": "unspecified" + }, + "file_path": "downloads/rdfxml/http___bag_basisregistraties_overheid_nl_def_bag.rdfxml" + } + } + } +] \ No newline at end of file From 19d9871203e95f1bad43653cac98d00047d17a7a Mon Sep 17 00:00:00 2001 From: "jj-author@users.noreply.github.com" Date: Fri, 13 Dec 2024 12:56:24 +0100 Subject: [PATCH 03/31] added timestamp logging and error cause --- experiments/download_ontologies.py | 32 +++++++++++++++++++++++++++++- 1 file changed, 31 insertions(+), 1 deletion(-) diff --git a/experiments/download_ontologies.py b/experiments/download_ontologies.py index e12f661..5994724 100644 --- a/experiments/download_ontologies.py +++ b/experiments/download_ontologies.py @@ -1,6 +1,8 @@ import os import requests import json +import traceback +import time from urllib.parse import urlparse def ensure_directory(path): @@ -21,6 +23,17 @@ def read_ontologies_from_file(file_path): with open(file_path, "r") as file: return [line.strip() for line in file if line.strip()] +def get_causal_chain(exception): + """Get the causal chain of exceptions.""" + chain = [] + while exception: + chain.append({ + "type": type(exception).__name__, + "message": str(exception), + }) + exception = exception.__cause__ + return chain + def download_ontology(url, formats, base_folder): """Download an ontology in specified formats and log details.""" ontology_info = { @@ -35,7 +48,9 @@ def download_ontology(url, formats, base_folder): for format_name, mime_type in formats.items(): try: headers["Accept"] = mime_type + start_time = time.time() response = requests.get(url, headers=headers, timeout=30) + request_duration = time.time() - start_time if response.status_code == 200: parsed_url = urlparse(url) @@ -46,22 +61,37 @@ def download_ontology(url, formats, base_folder): ensure_directory(folder_path) file_path = os.path.join(folder_path, filename) + download_start_time = time.time() save_file(response.content, file_path) + download_duration = time.time() - download_start_time ontology_info["downloads"][format_name] = { "status_code": response.status_code, "headers": dict(response.headers), "file_path": file_path, + "request_start_time": start_time, + "request_duration": request_duration, + # "download_duration": download_duration, } else: ontology_info["downloads"][format_name] = { "status_code": response.status_code, "error": "Failed to fetch the ontology", + "request_start_time": start_time, + "request_duration": request_duration, } except Exception as e: + request_duration = time.time() - start_time ontology_info["downloads"][format_name] = { - "error": str(e), + "error": { + "message": str(e), + "type": type(e).__name__, + "traceback": traceback.format_exc(), + "causal_chain": get_causal_chain(e), + }, + "request_start_time": start_time, + "request_duration": request_duration, } return ontology_info From 722784feb1f04397bee3634a174a2349e16af60e Mon Sep 17 00:00:00 2001 From: "jj-author@users.noreply.github.com" Date: Fri, 13 Dec 2024 14:00:00 +0100 Subject: [PATCH 04/31] changed retry mode and timeout --- experiments/download_ontologies.py | 11 +++++++++-- 1 file changed, 9 insertions(+), 2 deletions(-) diff --git a/experiments/download_ontologies.py b/experiments/download_ontologies.py index 5994724..4f835c3 100644 --- a/experiments/download_ontologies.py +++ b/experiments/download_ontologies.py @@ -4,6 +4,8 @@ import traceback import time from urllib.parse import urlparse +from requests.adapters import HTTPAdapter +from requests.packages.urllib3.util.retry import Retry def ensure_directory(path): """Ensure the directory exists.""" @@ -31,7 +33,7 @@ def get_causal_chain(exception): "type": type(exception).__name__, "message": str(exception), }) - exception = exception.__cause__ + exception = exception.__context__ return chain def download_ontology(url, formats, base_folder): @@ -45,11 +47,16 @@ def download_ontology(url, formats, base_folder): "Accept": "", } + session = requests.Session() + retries = Retry(total=0, backoff_factor=1, status_forcelist=[429]) + session.mount('http://', HTTPAdapter(max_retries=retries)) + session.mount('https://', HTTPAdapter(max_retries=retries)) + for format_name, mime_type in formats.items(): try: headers["Accept"] = mime_type start_time = time.time() - response = requests.get(url, headers=headers, timeout=30) + response = session.get(url, headers=headers, timeout=10) request_duration = time.time() - start_time if response.status_code == 200: From 6438ab6eb0b9b1d33ffe07a611b94227bb2cf8f8 Mon Sep 17 00:00:00 2001 From: "jj-author@users.noreply.github.com" Date: Fri, 13 Dec 2024 21:13:22 +0100 Subject: [PATCH 05/31] switchted to consistent json structure, better exception and fileinfo --- experiments/download_ontologies.py | 76 ++++++++++++++++++++++-------- 1 file changed, 56 insertions(+), 20 deletions(-) diff --git a/experiments/download_ontologies.py b/experiments/download_ontologies.py index 4f835c3..110e0e9 100644 --- a/experiments/download_ontologies.py +++ b/experiments/download_ontologies.py @@ -36,6 +36,18 @@ def get_causal_chain(exception): exception = exception.__context__ return chain +def get_type_chain(chain): + """Get the type chain as a string separated by '||'.""" + return ' || '.join([entry['type'] for entry in chain]) + +def get_more_specific_type(chain): + """Get the more specific type from the causal chain.""" + if len(chain) > 1: + if chain[1]['type'] == 'MaxRetryError' and len(chain) > 2: + return chain[2]['type'] + return chain[1]['type'] + return None + def download_ontology(url, formats, base_folder): """Download an ontology in specified formats and log details.""" ontology_info = { @@ -48,7 +60,8 @@ def download_ontology(url, formats, base_folder): } session = requests.Session() - retries = Retry(total=0, backoff_factor=1, status_forcelist=[429]) + session.max_redirects = 10 + retries = Retry(total=0, backoff_factor=1, status_forcelist=[427]) # wanted to use for 429 originally, but backoff is als applied to connection timeouts and such session.mount('http://', HTTPAdapter(max_retries=retries)) session.mount('https://', HTTPAdapter(max_retries=retries)) @@ -59,6 +72,7 @@ def download_ontology(url, formats, base_folder): response = session.get(url, headers=headers, timeout=10) request_duration = time.time() - start_time + file_path = "" if response.status_code == 200: parsed_url = urlparse(url) ontology_name = os.path.basename(parsed_url.path) or "ontology" @@ -72,34 +86,56 @@ def download_ontology(url, formats, base_folder): save_file(response.content, file_path) download_duration = time.time() - download_start_time - ontology_info["downloads"][format_name] = { - "status_code": response.status_code, - "headers": dict(response.headers), - "file_path": file_path, - "request_start_time": start_time, - "request_duration": request_duration, - # "download_duration": download_duration, - } - else: - ontology_info["downloads"][format_name] = { - "status_code": response.status_code, - "error": "Failed to fetch the ontology", - "request_start_time": start_time, - "request_duration": request_duration, - } + ontology_info["downloads"][format_name] = { + "status_code": response.status_code, + "file_path": file_path, + "request_start_time": start_time, + "request_duration": request_duration, + "error": { + "type": None, + "type_more_specific": None, + "type_chain": None, + "message": None, + "traceback": None, + "chain_details": None, + }, + "content_length": response.headers.get('Content-Length'), + "content_lenght_measured": len(response.content), + "content_type": response.headers.get('Content-Type'), + "headers": dict(response.headers), + # "download_duration": download_duration, + } + # else: + # ontology_info["downloads"][format_name] = { + # "status_code": response.status_code, + # "headers": dict(response.headers), + # "error": "Failed to fetch the ontology", + # "request_start_time": start_time, + # "request_duration": request_duration, + # } except Exception as e: request_duration = time.time() - start_time + chain_details = get_causal_chain(e) ontology_info["downloads"][format_name] = { + "status_code": None, + "file_path": None, + "request_start_time": start_time, + "request_duration": request_duration, + "content_length": None, + "content_lenght_measured": None, + "content_type": None, "error": { - "message": str(e), "type": type(e).__name__, + "type_more_specific": get_more_specific_type(chain_details), + "type_chain": get_type_chain(chain_details), + "message": str(e), "traceback": traceback.format_exc(), - "causal_chain": get_causal_chain(e), + "chain_details": chain_details, }, - "request_start_time": start_time, - "request_duration": request_duration, + "headers": None } + return ontology_info From d277caf5265de960b94389d96e65738ced9ba2d6 Mon Sep 17 00:00:00 2001 From: "jj-author@users.noreply.github.com" Date: Sat, 14 Dec 2024 22:40:48 +0100 Subject: [PATCH 06/31] added timeout of 200 ms to be nicer to the servers --- experiments/download_ontologies.py | 1 + 1 file changed, 1 insertion(+) diff --git a/experiments/download_ontologies.py b/experiments/download_ontologies.py index 110e0e9..032bdda 100644 --- a/experiments/download_ontologies.py +++ b/experiments/download_ontologies.py @@ -157,6 +157,7 @@ def main(): for url in urls: print(f'URL: {url}') ontology_log = download_ontology(url, formats, base_folder) + time.sleep(0.2) log.append(ontology_log) log_file = os.path.join(base_folder, "download_log.json") From b6ceac18c191a025354569cd465048f9d2601ace Mon Sep 17 00:00:00 2001 From: "jj-author@users.noreply.github.com" Date: Sat, 14 Dec 2024 22:43:02 +0100 Subject: [PATCH 07/31] transformation script to flatten some arrays for better view as table. --- experiments/transform_json.py | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) create mode 100644 experiments/transform_json.py diff --git a/experiments/transform_json.py b/experiments/transform_json.py new file mode 100644 index 0000000..7c42666 --- /dev/null +++ b/experiments/transform_json.py @@ -0,0 +1,32 @@ +import json +import os + +def transform_json(input_file_path, output_file_path): + if not os.path.exists(input_file_path): + raise FileNotFoundError(f"The file {input_file_path} does not exist.") + + with open(input_file_path, "r") as file: + data = json.load(file) + + for entry in data: + for download in entry.get("downloads", {}).values(): + if "headers" in download and isinstance(download["headers"], dict): + download["headers"] = "\n".join(f"{k}: {v}" for k, v in download["headers"].items()) + if "error" in download and download["error"] and "chain_details" in download["error"]: + chain_details = download["error"]["chain_details"] + if isinstance(chain_details, list): + download["error"]["chain_details"] = "\n".join( + f"{item['type']}: {item['message']}" for item in chain_details + ) + + with open(output_file_path, "w") as file: + json.dump(data, file, indent=4) + +def main(): + input_json_file = "downloads/download_log.json" + output_json_file = "downloads/download_log_flattened.json" + transform_json(input_json_file, output_json_file) + print(f"Transformation complete. File saved to {output_json_file}") + +if __name__ == "__main__": + main() From b4740617a96e1def95aef0953890fc409599b888 Mon Sep 17 00:00:00 2001 From: "jj-author@users.noreply.github.com" Date: Sat, 14 Dec 2024 22:49:00 +0100 Subject: [PATCH 08/31] shuffled ontologies a little bit --- experiments/archivo_ontologies.txt | 3504 ++++++++++++++-------------- 1 file changed, 1752 insertions(+), 1752 deletions(-) diff --git a/experiments/archivo_ontologies.txt b/experiments/archivo_ontologies.txt index 31fb38c..83c00ae 100644 --- a/experiments/archivo_ontologies.txt +++ b/experiments/archivo_ontologies.txt @@ -1,1817 +1,1817 @@ -http://babelnet.org/rdf/ -http://bag.basisregistraties.overheid.nl/def/bag -http://bblfish.net/work/atom-owl/2006-06-06/ -http://brk.basisregistraties.overheid.nl/def/brk -http://brt.basisregistraties.overheid.nl/def/top10nl -http://brt.basisregistraties.overheid.nl/id/begrippenkader/top10nl -http://buzzword.org.uk/rdf/personal-link-types# -http://catalogus-professorum.org/cpm/2/ -http://data-gov.tw.rpi.edu/2009/data-gov-twc.rdf -http://data.bigdatagrapes.eu/resource/ontology/ -http://data.europa.eu/esco/flow -http://data.globalchange.gov/gcis.owl -http://data.ontotext.com/resource/leak/ -http://data.opendiscoveryspace.eu/lom_ontology_ods.owl# -http://data.ordnancesurvey.co.uk/ontology/50kGazetteer/ -http://data.ordnancesurvey.co.uk/ontology/admingeo/ -http://data.ordnancesurvey.co.uk/ontology/geometry/ -http://data.ordnancesurvey.co.uk/ontology/postcode/ -http://data.ordnancesurvey.co.uk/ontology/spatialrelations/ -http://data.qudt.org/qudt/owl/1.0.0/dimension.owl -http://data.qudt.org/qudt/owl/1.0.0/quantity.owl -http://data.qudt.org/qudt/owl/1.0.0/qudt.owl -http://data.qudt.org/qudt/owl/1.0.0/unit.owl -http://datafoodconsortium.org/ontologies/DFC_BusinessOntology.owl -http://datafoodconsortium.org/ontologies/DFC_FullModel.owl -http://dati.beniculturali.it/cis/ -http://dati.san.beniculturali.it/SAN/ -http://dbpedia.org/ontology/ -http://dd.eionet.europa.eu/vocabulary/common/nuts/ -http://def.seegrid.csiro.au/isotc211/iso19103/2005/basic -http://def.seegrid.csiro.au/isotc211/iso19107/2003/geometry -http://def.seegrid.csiro.au/isotc211/iso19108/2002/temporal -http://def.seegrid.csiro.au/isotc211/iso19109/2005/feature -http://def.seegrid.csiro.au/isotc211/iso19115/2003/citation -http://def.seegrid.csiro.au/isotc211/iso19115/2003/dataquality -http://def.seegrid.csiro.au/isotc211/iso19115/2003/dataset -http://def.seegrid.csiro.au/isotc211/iso19115/2003/extent -http://def.seegrid.csiro.au/isotc211/iso19115/2003/lineage -http://def.seegrid.csiro.au/isotc211/iso19123/2005/coverage +http://rdf.insee.fr/def/geo +http://deductions.github.io/biological-collections.owl.ttl# http://def.seegrid.csiro.au/isotc211/iso19150/-2/2012/basic -http://def.seegrid.csiro.au/isotc211/iso19156/2011/observation -http://def.seegrid.csiro.au/isotc211/iso19156/2011/sampling -http://def.seegrid.csiro.au/ontology/om/om-lite -http://def.seegrid.csiro.au/ontology/om/sam-lite -http://demiblog.org/vocab/oauth# -http://dev.poderopedia.com/vocab/schema -http://ec.europa.eu/eurostat/ramon/ontologies/geographic.rdf -http://environment.data.gov.au/def/op -http://gadm.geovocab.org/ontology -http://geni-orca.renci.org/owl/topology.owl -http://geovocab.org/geometry -http://geovocab.org/spatial -http://guava.iis.sinica.edu.tw/r4r -http://iais.fraunhofer.de/vocabs/rami# -http://id.loc.gov/ontologies/RecordInfo -http://ii.uwb.edu.pl/pgo# -http://info.deepcarbon.net/schema -http://lawd.info/ontology/ -http://linked-web-apis.fit.cvut.cz/ns/core -http://linked.earth/ontology# -http://linkeddata.center/kees/v1 -http://linkedscience.org/lsc/ns# -http://lod.nl.go.kr/ontology/ -http://lod.taxonconcept.org/ontology/taxnomen/index.owl -http://melodi.irit.fr/ontologies/eoam.owl -http://mmoon.org/core/ +http://openenergy-platform.org/ontology/oeo/oeo-shared/ +http://www.w3.org/ns/ssn/ext +http://vocab.deri.ie/fingal +http://semanticscience.org/resource/SIO_000275.rdf +https://privatealpha.com/ontology/process-model/1# +http://www.w3.org/2006/timezone +https://w3id.org/ldes#Vocabulary +http://semanticscience.org/resource/SIO_000856.rdf +https://spec.edmcouncil.org/fibo/ontology/FND/Agreements/Agreements/ +http://vocab.linkeddata.es/datosabiertos/kos/sector-publico/empleo/empleado-publico +https://www.auto.tuwien.ac.at/downloads/thinkhome/ontology/WeatherOntology.owl +http://purl.obolibrary.org/obo/MFOEM.owl +http://www.agfa.com/w3c/2009/clinicalEvaluation +http://deductions.github.io/doas.owl.ttl# +http://lod.taxonconcept.org/ontology/txn.owl +http://semanticscience.org/resource/SIO_001331.rdf +http://archivi.ibc.regione.emilia-romagna.it/ontology/eac-cpf/eac-cpf.rdf +http://semanticscience.org/resource/SIO_000053.rdf +http://def.seegrid.csiro.au/isotc211/iso19107/2003/geometry +http://www.openlinksw.com/ontology/features +http://semanticscience.org/resource/SIO_001276.rdf http://njh.me/ -http://nr.inria.fr/ludo/v1 -http://ns.bergnet.org/tac/0.1/triple-access-control# -http://ns.taverna.org.uk/2010/scufl2 -http://ns.taverna.org.uk/2012/tavernaprov/ -http://onto.eva.mpg.de/ontologies/gfo-bio.owl -http://ontologi.es/days# -http://ontologi.es/doap-bugs# -http://ontologi.es/doap-changeset +http://semanticscience.org/resource/SIO_000838.rdf +https://d-nb.info/standards/elementset/agrelon# http://ontologi.es/doap-deps# -http://ontologi.es/lang/core# -http://ontologi.es/like -http://ontologies.geohive.ie/osi -http://ontosoft.org/software -http://opendata.aragon.es/def/ei2a -http://opendata.caceres.es/def/ontomunicipio -http://openenergy-platform.org/ontology/oeo/ -http://openenergy-platform.org/ontology/oeo/imports/iao-module.owl -http://openenergy-platform.org/ontology/oeo/imports/ro-module.owl -http://openenergy-platform.org/ontology/oeo/imports/uo-module.owl -http://openenergy-platform.org/ontology/oeo/oeo-model/ -http://openenergy-platform.org/ontology/oeo/oeo-physical-axioms/ +http://open-services.net/ns/core# +http://purl.org/metainfo/terms/dsp +http://www.bioassayontology.org/bao/bao_complete.owl +http://edamontology.org +http://purl.allotrope.org/voc/afo/REC/2020/12/aft +https://mdcs.monumentenkennis.nl/damageatlas/ontology +http://colin.maudry.com/ontologies/dgfr# +http://lod.taxonconcept.org/ontology/sci_people.owl +http://semanticscience.org/resource/SIO_000832.rdf +http://semanticscience.org/resource/SIO_010071.rdf +http://purl.org/linked-data/sdmx/2009/concept#cog +http://purl.obolibrary.org/obo/go.owl +https://id.parliament.uk/schema +https://dataid.dbpedia.org/databus# +http://rds.posccaesar.org/2008/02/OWL/ISO-15926-2_2003 +http://www.w3.org/ns/prov-links +http://eulersharp.sourceforge.net/2003/03swap/foster +http://vocab.linkeddata.es/datosabiertos/kos/sector-publico/empleo/grupo-profesional +http://swpatho.ag-nbi.de/context/meta.owl +http://semanticscience.org/resource/SIO_000652.rdf +http://semanticscience.org/resource/SIO_001167.rdf +https://w3id.org/sbeo +http://purl.obolibrary.org/obo/chiro.owl +http://purl.bdrc.io/ontology/core/ +http://semanticscience.org/resource/SIO_000483.rdf +http://www.openlinksw.com/ontology/shop +http://purl.org/xro/ns +http://semanticscience.org/resource/SIO_000498.rdf +http://ns.inria.fr/ludo/v1/gamemodel +http://www.w3.org/ns/prov-dc-directmappings +https://saref.etsi.org/saref4syst/ +https://w3id.org/ops +https://spec.edmcouncil.org/fibo/ontology/FND/Utilities/AnnotationVocabulary/ +http://www.w3.org/TR/2003/CR-owl-guide-20030818/wine +http://purl.obolibrary.org/obo/cio.owl +http://www.bl.uk/schemas/bibliographic/blterms +http://semanticscience.org/resource/SIO_000915.rdf +https://privatealpha.com/ontology/content-inventory/1# +https://w3id.org/icon/ontology/ +http://purl.org/spar/tvc +http://semanticscience.org/resource/SIO_000405.rdf +http://purl.org/uF/hCard/terms/ +http://semanticscience.org/resource/SIO_010038.rdf +http://xmlns.com/foaf/0.1/ +http://purl.allotrope.org/voc/afo/WD/2020/03/afo +http://linked.data.gov.au/def/asgs +http://lod.taxonconcept.org/ontology/taxnomen/index.owl +http://protege.stanford.edu/plugins/owl/dc/protege-dc.owl +http://ns.inria.fr/prissma/v1 +http://akswnc7.informatik.uni-leipzig.de/dstreitmatter/archivo/archivo-test-ontology.ttl# +https://ontologies.semanticarts.com/o/gistCore +https://w3id.org/pfeepsa# +http://www.tele.pw.edu.pl/~sims-onto/ConnectivityType.owl +http://www.molmod.info/semantics/pims-ii.ttl +http://semanticscience.org/resource/SIO_001318.rdf +http://purl.org/net/bel-epa/ccy +http://spinrdf.org/spin +https://www.gleif.org/ontology/ReportingException/ +http://dataid.dbpedia.org/ns/mods +http://purl.obolibrary.org/obo/iao.owl +http://purl.org/datajourneys/ +http://qudt.org/vocab/unit/acoustics +http://vocab.deri.ie/pdo +http://semanticscience.org/resource/SIO_000837.rdf +http://purl.org/foodontology +https://www.omg.org/spec/LCC/Countries/Regions/AboutRegions/ +http://vocab.deri.ie/ppo +https://w3id.org/won/core +http://data.ign.fr/id/codes/topo/typederelief/liste +https://w3id.org/affectedBy +http://assemblee-virtuelle.github.io/grands-voisins-v2/thesaurus.ttl +https://w3id.org/scholarlydata/ontology/conference-ontology.owl +http://vocabularies.wikipathways.org/wpTypes# +http://purl.obolibrary.org/obo/peco.owl +http://purl.obolibrary.org/obo/obcs.owl +http://swat.cse.lehigh.edu/resources/onto/aigp.owl +http://purl.org/net/wf-invocation +http://gadm.geovocab.org/ontology +http://kmi.open.ac.uk/projects/smartproducts/ontologies/food.owl +http://vocab.ciudadesabiertas.es/def/sector-publico/empleo +http://semweb.mmlab.be/ns/fnml +https://w3id.org/GConsent +http://purl.allotrope.org/voc/afo/perspective/REC/2020/12/molecular-scale +http://purl.org/imbi/ru-meta.owl +http://semanticscience.org/resource/SIO_011125.rdf +http://www.omg.org/techprocess/ab/SpecificationMetadata/ +http://purl.obolibrary.org/obo/hao.owl +http://www.openlinksw.com/ontology/acl# +http://rdf.insee.fr/def/demo http://openenergy-platform.org/ontology/oeo/oeo-physical/ -http://openenergy-platform.org/ontology/oeo/oeo-shared/ -http://openenergy-platform.org/ontology/oeo/oeo-social/ -http://promsns.org/def/agr +http://www.sealitproject.eu/ontology/ +http://purl.org/NET/acc +http://data.ign.fr/id/codes/topo/typedelaisse/liste +http://catalogus-professorum.org/cpm/2/ +http://semanticscience.org/resource/SIO_000600.rdf +http://mmoon.org/core/ +http://purl.obolibrary.org/obo/uberon.owl +http://semanticscience.org/resource/SIO_010379.rdf +https://d-nb.info/standards/vocab/gnd/gnd-sc# +http://purl.allotrope.org/voc/afo/REC/2021/06/afo +http://data.globalchange.gov/gcis.owl +http://deductions.github.io/seeds.owl.ttl# +http://www.w3.org/2007/uwa/context/deliverycontext.owl +https://w3id.org/nen2660/shacl/def +http://semanticscience.org/resource/SIO_000080.rdf +http://purl.obolibrary.org/obo/stato.owl http://promsns.org/def/decprov -http://promsns.org/def/proms -http://purl.obolibrary.org/obo/cto.owl -http://purl.obolibrary.org/obo/ero.owl -http://purl.obolibrary.org/obo/uberon/bridge/collected-metazoan.owl -http://purl.obolibrary.org/obo/uberon/bridge/collected-vertebrate.owl -http://purl.obolibrary.org/obo/upheno/dpo/dpo-bridge.owl -http://purl.oreilly.com/ns/meta/ -http://purl.org/acco/ns# -http://purl.org/carfo# -http://purl.org/co +http://eulersharp.sourceforge.net/2003/03swap/countries +http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-wbbt.owl +http://semanticscience.org/resource/SIO_000296.rdf +http://purl.org/spar/frbr +https://w3id.org/express +http://semanticscience.org/resource/SIO_001300.rdf +http://purl.obolibrary.org/obo/iao/pno.owl +http://semanticscience.org/resource/SIO_000031.rdf +http://ontology.cybershare.utep.edu/ELSEWeb/elseweb-service.owl +https://spec.edmcouncil.org/fibo/ontology/FND/Law/LegalCore/ +http://purl.org/healthcarevocab/v1 +http://kmi.open.ac.uk/projects/smartproducts/ontologies/generic.owl +http://www.rkbexplorer.com/ontologies/acm +http://purl.obolibrary.org/obo/dpo.owl +http://purl.obolibrary.org/obo/pr.owl +http://swrl.stanford.edu/ontologies/3.3/swrla.owl +http://purl.obolibrary.org/obo/upheno/vertebrate.owl +https://w3id.org/seas/QUDTAlignment http://purl.org/configurationontology -http://purl.org/csm/1.0 -http://purl.org/dsnotify/vocab/eventset/ -http://purl.org/dsw/ -http://purl.org/eis/vocab/daq# -http://purl.org/imbi/ru-meta.owl -http://purl.org/iso25964/skos-thes -http://purl.org/linkingyou/ -http://purl.org/makolab/caont/ -http://purl.org/NET/acc -http://purl.org/net/bel-epa/ccy -http://purl.org/net/bel-epa/doacc -http://purl.org/NET/biol/botany# -http://purl.org/NET/biol/ns# -http://purl.org/NET/biol/zoology# -http://purl.org/NET/book/vocab# -http://purl.org/NET/cidoc-crm/core -http://purl.org/NET/cpan-uri/terms# -http://purl.org/NET/dc_owl2dl/terms_od -http://purl.org/NET/decimalised#d -http://purl.org/NET/lx -http://purl.org/net/opmv/ns# -http://purl.org/NET/puc -http://purl.org/NET/uri# -http://purl.org/NET/util/ann -http://purl.org/nxp/schema/v1 -http://purl.org/ontology/dvia -http://purl.org/ontology/myspace -http://purl.org/ontology/po/ -http://purl.org/ontology/storyline -http://purl.org/ontology/video/ -http://purl.org/ontology/wo/ -http://purl.org/prog/ -http://purl.org/reco# -http://purl.org/rvl/ -http://purl.org/science/owl/sciencecommons/ -http://purl.org/signify/ns# -http://purl.org/spar/pro/ -http://purl.org/theatre# -http://purl.org/uco/ns# -http://purl.org/uF/hCard/terms/ -http://purl.org/viso/ -http://purl.org/wai# -http://qudt.org/1.1/schema/qudt -http://qudt.org/vocab/unit/acoustics -http://rdf-vocabulary.ddialliance.org/discovery -http://rdf-vocabulary.ddialliance.org/xkos -http://rdf.histograph.io/ -http://rdf.insee.fr/def/demo -http://rdf.insee.fr/def/geo -http://rdf.muninn-project.org/ontologies/muninn -http://reference.data.gov.uk/def/central-government -http://reference.data.gov.uk/def/intervals/ -http://rinfo.lagrummet.se/ns/2008/11/rinfo/publ# -http://schema.mobivoc.org/# -http://securitytoolbox.appspot.com/securityAlgorithms# -http://securitytoolbox.appspot.com/securityMain# -http://securitytoolbox.appspot.com/stac# -http://semanticscience.org/resource/CHEMINF_000042.rdf -http://semanticscience.org/resource/CHEMINF_000442.rdf -http://semweb.mmlab.be/ns/fnml -http://sensormeasurement.appspot.com/m3# -http://sparql.cwrc.ca/ontologies/cwrc -http://sparql.cwrc.ca/ontologies/genre -http://sparql.cwrc.ca/ontologies/ii -http://sparql.sstu.ru:3030/speciality/ -http://streamreasoning.org/ontologies/frappe# -http://swa.cefriel.it/ontologies/botdcat-ap -http://theme-e.adaptcentre.ie/dave# -http://timbus.teco.edu/ontologies/DIO.owl -http://timbus.teco.edu/ontologies/VPlan.owl -http://topbraid.org/tosh -http://tw.rpi.edu/schema/ -http://uri4uri.net/vocab# -http://usefulinc.com/ns/doap# -http://vocab.deri.ie/am -http://vocab.deri.ie/br -http://vocab.deri.ie/c4n -http://vocab.deri.ie/cloudisus -http://vocab.deri.ie/cogs -http://vocab.deri.ie/csp -http://vocab.deri.ie/dady -http://vocab.deri.ie/fingal -http://vocab.deri.ie/odapp -http://vocab.deri.ie/orca -http://vocab.deri.ie/pdo -http://vocab.deri.ie/ppo -http://vocab.deri.ie/raul -http://vocab.deri.ie/rooms -http://vocab.deri.ie/rulz -http://vocab.deri.ie/sad -http://vocab.deri.ie/scovo -http://vocab.deri.ie/scsv -http://vocab.deri.ie/search -http://vocab.deri.ie/tao -http://vocab.deri.ie/void -http://vocab.lenka.no/geo-deling -http://vocabularies.wikipathways.org/gpml# -http://vocabularies.wikipathways.org/wp# -http://vocabularies.wikipathways.org/wpTypes# -http://w3id.org/charta77/jup -http://w3id.org/gaia-x/core# -http://w3id.org/lindt/voc# -http://w3id.org/nkos -http://w3id.org/prohow# -http://w3id.org/version/ontology -http://wordnet-rdf.princeton.edu/ontology -http://www.bbc.co.uk/ontologies/bbc -http://www.bbc.co.uk/ontologies/cms -http://www.bbc.co.uk/ontologies/coreconcepts -http://www.bbc.co.uk/ontologies/creativework -http://www.bbc.co.uk/ontologies/provenance -http://www.bbc.co.uk/ontologies/sport -http://www.biomodels.net/kisao/KISAO_FULL# -http://www.bl.uk/schemas/bibliographic/blterms -http://www.coinsweb.nl/cbim-2.0.rdf -http://www.conjecto.com/ontology/2015/lheo -http://www.data-knowledge.org/dk/ -http://www.demcare.eu/ontologies/contextdescriptor.owl -http://www.demcare.eu/ontologies/demlab.owl -http://www.ebu.ch/metadata/ontologies/ebucore/ebucore -http://www.eclap.eu/schema/eclap/ -http://www.europeana.eu/schemas/edm/ -http://www.georss.org/georss/ -http://www.gsi.dit.upm.es/ontologies/marl/ns -http://www.gsi.dit.upm.es/ontologies/onyx/ns -http://www.ics.forth.gr/isl/MarineTLO/v4/marinetlo.owl -http://www.ics.forth.gr/isl/oae/core -http://www.ics.forth.gr/isl/oncm/core -http://www.ics.forth.gr/isl/VoIDWarehouse/VoID_Extension_Schema.owl -http://www.influenceTracker.com/ontology -http://www.linklion.org/ontology -http://www.loc.gov/mads/rdf/v1 -http://www.mygrid.org.uk/mygrid-moby-service -http://www.mygrid.org.uk/ontology -http://www.nanopub.org/nschema -http://www.observedchange.com/moac/ns# -http://www.observedchange.com/tisc/ns# -http://www.ontotext.com/proton/protonext -http://www.ontotext.com/proton/protontop -http://www.opmw.org/ontology/ -http://www.purl.org/dabgeo/common-domain/ders -http://www.rkbexplorer.com/ontologies/acm -http://www.rkbexplorer.com/ontologies/coref -http://www.theworldavatar.com/ontology/ontocompchem/ontocompchem.owl -http://www.virtual-assembly.org/DataFoodConsortium/BusinessOntology -http://www.w3.org/ns/adms -http://www.w3.org/ns/formats/ -http://www.w3.org/ns/hydra/core -http://www.w3.org/ns/locn -http://www.w3.org/ns/person -http://www.w3id.org/laas-iot/edr -http://www.w3id.org/laas-iot/lmu -http://www.wsmo.org/ns/wsmo-lite# -https://bag2.basisregistraties.overheid.nl/bag/def/ -https://bgt.basisregistraties.overheid.nl/bgt/def/ -https://bmake.th-brandenburg.de/spv -https://budayakb.cs.ui.ac.id/ns -https://data.cbb.omgeving.vlaanderen.be/id/ontology/cbb -https://data.dsi.omgeving.vlaanderen.be/id/ontology/dsi -https://id.kb.se/vocab/ -https://id.parliament.uk/schema -https://mltd.pikopikopla.net/mltd-schema -https://ns.eccenca.com/ -https://ns.inria.fr/sure# -https://paf.link/ -https://purl.org/cm/onto/apco -https://purl.org/ctdl/terms/ActionStatus -https://purl.org/heals/sco/ -https://purls.helmholtz-metadaten.de/diso -https://raw.githubusercontent.com/enpadasi/Ontology-for-Nutritional-Studies/master/src/ontology/imports/ONS_imports.owl -https://sireneld.io/vocab/compub -https://sireneld.io/vocab/sirene# -https://trakmetamodel.sourceforge.io/vocab/rdf-schema.rdf -https://vocab.eccenca.com/auth/ -https://vocab.eccenca.com/geniustex/ -https://vocab.eccenca.com/revision/ -https://w3id.org/AIRO -https://w3id.org/arco/ontology/immovable-property -https://w3id.org/arco/ontology/movable-property -https://w3id.org/bop# -https://w3id.org/cc# -https://w3id.org/consolid# -https://w3id.org/dco -https://w3id.org/digitalconstruction/EnergySystems -https://w3id.org/eeo -https://w3id.org/eepsa/ek4eepsa -https://w3id.org/eepsa/q4eepsa -https://w3id.org/i40/aml# -https://w3id.org/i40/sto/iot/concerns/ -https://w3id.org/iadopt/ont -https://w3id.org/laas-iot/adream -https://w3id.org/ln# -https://w3id.org/multidimensional-interface/ontology -https://w3id.org/nno/ontology -https://w3id.org/ops -https://w3id.org/pep/ -https://w3id.org/semsys/ns/swemls -https://w3id.org/ttla/ -https://w3id.org/valueflows/ -https://www.w3.org/TR/ldn/#ldn-tests-sender -https://www.w3id.org/bop -https://yogaontology.org/ontology/ -http://advene.org/ns/cinelab/ld -http://akswnc7.informatik.uni-leipzig.de/dstreitmatter/archivo/archivo-test-ontology.ttl# -http://archivi.ibc.regione.emilia-romagna.it/ontology/eac-cpf/eac-cpf.rdf -http://assemblee-virtuelle.github.io/grands-voisins-v2/gv.owl.ttl -http://assemblee-virtuelle.github.io/grands-voisins-v2/thesaurus.ttl -http://bdi.si.ehu.es/bdi/ontologies/ExtruOnt/3D4ExtruOnt -http://bdi.si.ehu.es/bdi/ontologies/ExtruOnt/ExtruOnt -http://biohackathon.org/resource/faldo -http://cedric.cnam.fr/isid/ontologies/OntoSemStats.owl# -http://cedric.cnam.fr/isid/ontologies/PersonLink.owl# -http://citydata.wu.ac.at/qb-equations# -http://colin.maudry.com/ontologies/dgfr# -http://comicmeta.org/cbo/ -http://completeness.inf.unibz.it/sp-vocab -http://contsem.unizar.es/def/sector-publico/pproc# -http://cookingbigdata.com/linkeddata/ccinstances# -http://cookingbigdata.com/linkeddata/ccpricing# -http://cookingbigdata.com/linkeddata/ccregions# -http://cookingbigdata.com/linkeddata/ccsla# -http://cso.kmi.open.ac.uk/schema/cso# -http://d3fend.mitre.org/ontologies/d3fend.owl -http://data.businessgraph.io/ontology -http://data.europa.eu/949/ -http://data.europa.eu/a4g/ontology -http://data.europa.eu/esco/model -http://data.europa.eu/m8g/cpsvap -http://data.europa.eu/s66# -http://data.finlex.fi/schema/sfl/ -http://data.ign.fr/def/geofla -http://data.ign.fr/def/geometrie -http://data.ign.fr/def/ignf -http://data.ign.fr/def/topo# -http://data.ign.fr/id/codes/geofla/typedecommune/liste -http://data.ign.fr/id/codes/topo/typedebatiment/liste -http://data.ign.fr/id/codes/topo/typedeconstruction/liste -http://data.ign.fr/id/codes/topo/typedefranchissement/liste -http://data.ign.fr/id/codes/topo/typedelaisse/liste -http://data.ign.fr/id/codes/topo/typedepointdeau/liste -http://data.ign.fr/id/codes/topo/typederelief/liste -http://data.ign.fr/id/codes/topo/typedereservoir/liste -http://data.ign.fr/id/codes/topo/typederoute/liste -http://data.ign.fr/id/codes/topo/typedeterraindesport/liste -http://data.ign.fr/id/codes/topo/typedetransportcable/liste -http://data.ign.fr/id/codes/topo/typedevegetation/liste -http://data.ign.fr/id/codes/topo/typedevoieferree/liste -http://data.ign.fr/id/codes/topo/typedezai/liste -http://data.nobelprize.org/terms/ -http://data.persee.fr/ontology/persee-ontology/ -http://data.posccaesar.org/rdl/ -http://data.vlaanderen.be/ns/besluit -http://data.vlaanderen.be/ns/mandaat -http://dataid.dbpedia.org/ns/core# -http://dataid.dbpedia.org/ns/mod -http://dataid.dbpedia.org/ns/mods -http://datashapes.org/dash -http://dati.cdec.it/lod/shoah/ -http://dati.san.beniculturali.it/SAN/TesauroSAN -http://datos.bcn.cl/ontologies/bcn-biographies# -http://datos.bcn.cl/ontologies/bcn-congress# -http://datos.bcn.cl/ontologies/bcn-geographics#GeographicOntology -http://datos.bcn.cl/ontologies/bcn-resources -http://dcat-ap.de/def/licenses -http://deductions.github.io/biological-collections.owl.ttl# -http://deductions.github.io/doas.owl.ttl# -http://deductions.github.io/geoloc.owl.ttl# -http://deductions.github.io/nature_observation.owl.ttl# -http://deductions.github.io/seeds.owl.ttl# -http://deductions.github.io/task-management.owl.ttl# -http://deductions.github.io/vehicule-management.owl.ttl# -http://delicias.dia.fi.upm.es/ontologies/ObjectWithStates.owl -http://dqm.faw.jku.at/ontologies/dsd -http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl -http://edamontology.org -http://elite.polito.it/ontologies/dogont.owl -http://elite.polito.it/ontologies/eupont.owl -http://elite.polito.it/ontologies/muo-vocab.owl# -http://elite.polito.it/ontologies/ucum-instances.owl -http://emmo.info/emmo -http://emmo.info/emmo/application/maeo/experts -http://emmo.info/emmo/domain/chameo/chameo -http://energy.linkeddata.es/em-kpi/ontology -http://eprints.org/ontology/ -http://erlangen-crm.org/current/ -http://erlangen-crm.org/efrbroo/ -http://eulersharp.sourceforge.net/2003/03swap/agent -http://eulersharp.sourceforge.net/2003/03swap/bioSKOSSchemes -http://eulersharp.sourceforge.net/2003/03swap/care -http://eulersharp.sourceforge.net/2003/03swap/countries -http://eulersharp.sourceforge.net/2003/03swap/document -http://eulersharp.sourceforge.net/2003/03swap/environment -http://eulersharp.sourceforge.net/2003/03swap/event -http://eulersharp.sourceforge.net/2003/03swap/foster -http://eulersharp.sourceforge.net/2003/03swap/genomeAbnormality# -http://eulersharp.sourceforge.net/2003/03swap/human -http://eulersharp.sourceforge.net/2003/03swap/humanBody -http://eulersharp.sourceforge.net/2003/03swap/languages# -http://eulersharp.sourceforge.net/2003/03swap/organism# -http://eulersharp.sourceforge.net/2003/03swap/organization# -http://eulersharp.sourceforge.net/2003/03swap/physicalResource -http://eulersharp.sourceforge.net/2003/03swap/quantitiesExtension# -http://eulersharp.sourceforge.net/2003/03swap/space -http://eulersharp.sourceforge.net/2003/03swap/time -http://eulersharp.sourceforge.net/2003/03swap/units# -http://eulersharp.sourceforge.net/2003/03swap/unitsExtension -http://eunis.eea.europa.eu/rdf/species-schema.rdf -http://fedora.info/definitions/v4/audit# -http://gov.genealogy.net/ontology.owl -http://id.loc.gov/authorities/names -http://id.loc.gov/authorities/subjects -http://id.loc.gov/datatypes/edtf -http://id.loc.gov/ontologies/bflc/ -http://id.loc.gov/ontologies/bibframe/ -http://id.loc.gov/vocabulary/graphicMaterials -http://id.loc.gov/vocabulary/identifiers -http://id.loc.gov/vocabulary/iso639-1 -http://id.loc.gov/vocabulary/issuance -http://id.loc.gov/vocabulary/marcgt -http://id.loc.gov/vocabulary/menclvl -http://id.loc.gov/vocabulary/preservation -http://id.loc.gov/vocabulary/preservation/eventType -http://id.loc.gov/vocabulary/relators -http://id.nlm.nih.gov/mesh/vocab# -http://iflastandards.info/ns/muldicat -http://iiif.io/api/image/2# -http://iiif.io/api/presentation/2 -http://imi.go.jp/ns/core/rdf -http://iserve.kmi.open.ac.uk/ns/msm -http://jazz.net/ns/rm# -http://kaiko.getalp.org/dbnary 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-http://linkedevents.org/ontology/ -http://lod.taxonconcept.org/ontology/dwc_area.owl -http://lod.taxonconcept.org/ontology/p01/Mammalia/index.owl -http://lod.taxonconcept.org/ontology/people.owl -http://lod.taxonconcept.org/ontology/sci_people.owl -http://lod.taxonconcept.org/ontology/txn.owl -http://lod.taxonconcept.org/ontology/year.owl -http://lsq.aksw.org/vocab -http://marineregions.org/ns/ontology -http://marineregions.org/ns/placetypes -http://memorix.io/ontology# -http://meta.icos-cp.eu/ontologies/cpmeta/ -http://mex.aksw.org/mex-algo -http://mex.aksw.org/mex-core -http://mex.aksw.org/mex-perf -http://mged.sourceforge.net/ontologies/MGEDOntology.owl -http://micra.com/COSMO/COSMO.owl -http://mmisw.org/ont/cf/parameter -http://modellen.geostandaarden.nl/def/nen3610 -http://models.okkam.org/ENS-core-vocabulary.owl -http://msi-ontology.sourceforge.net/ontology/NMR.owl -http://nl.ijs.si/ME/owl/multext-east.owl -http://ns.inria.fr/ast/sql# -http://ns.inria.fr/emoca# -http://ns.inria.fr/l4lod/v2 -http://ns.inria.fr/ludo/v1/gamemodel -http://ns.inria.fr/ludo/v1/gamepresentation# -http://ns.inria.fr/ludo/v1/virtualcontext# -http://ns.inria.fr/ludo/v1/xapi -http://ns.inria.fr/munc# -http://ns.inria.fr/munc/v1# -http://ns.inria.fr/nicetag/2010/09/09/voc -http://ns.inria.fr/nrv# -http://ns.inria.fr/prissma/v1 -http://ns.inria.fr/prissma/v2# -http://ns.inria.fr/provoc -http://ns.inria.fr/ratio4ta/v1 -http://ns.inria.fr/s4ac/v2 -http://ns.inria.fr/semed/eduprogression/v1 -http://ns.nature.com/terms/ -http://ns.ottr.xyz/templates -http://ns.softwiki.de/req/2/ -http://ontology.cybershare.utep.edu/ELSEWeb/elseweb-data.owl -http://ontology.cybershare.utep.edu/ELSEWeb/elseweb-edac.owl -http://ontology.cybershare.utep.edu/ELSEWeb/elseweb-modelling.owl -http://ontology.cybershare.utep.edu/ELSEWeb/elseweb-service.owl -http://ontology.cybershare.utep.edu/ELSEWeb/mappings/elseweb-mappings.owl -http://ontology.cybershare.utep.edu/dbowl/relational-to-ontology-mapping-primitive.owl -http://ontology.ethereal.cz/irao -http://ontology.ethereal.cz/ygo -http://open-services.net/ns/asset# -http://open-services.net/ns/core# -http://opendata.aragon.es/def/ei2a/categorization -http://paul.staroch.name/thesis/SmartHomeWeather.owl# -http://pcdm.org/use# -http://permid.org/ontology/common/ -http://permid.org/ontology/organization/ -http://permid.org/ontology/tr-vcard/ -http://permid.org/ontology/trbc/ -http://persistence.uni-leipzig.org/nlp2rdf/ontologies/nif-core# -http://persistence.uni-leipzig.org/nlp2rdf/ontologies/rlog# -http://pgxo.loria.fr/ -http://philosurfical.open.ac.uk/ontology/philosurfical.owl -http://premon.fbk.eu/ontology/core -http://premon.fbk.eu/ontology/fn -http://premon.fbk.eu/ontology/nb -http://premon.fbk.eu/ontology/pb -http://premon.fbk.eu/ontology/vn -http://protege.stanford.edu/plugins/owl/dc/protege-dc.owl -http://protege.stanford.edu/plugins/owl/protege -http://publications.europa.eu/resource/authority/asset-classification -http://publications.europa.eu/resource/authority/corporate-body -http://publications.europa.eu/resource/authority/dataset-type -http://publications.europa.eu/resource/authority/file-type -http://publications.europa.eu/resource/authority/language -http://publications.europa.eu/resource/authority/resource-type -http://purl.allotrope.org/ontologies/common/qualifier -http://purl.allotrope.org/voc/afo/REC/2018/07/aft -http://purl.allotrope.org/voc/afo/REC/2018/07/curation -http://purl.allotrope.org/voc/afo/REC/2018/11/aft -http://purl.allotrope.org/voc/afo/REC/2018/11/relation -http://purl.allotrope.org/voc/afo/REC/2019/06/aft -http://purl.allotrope.org/voc/afo/REC/2019/09/afo -http://purl.allotrope.org/voc/afo/REC/2019/09/aft -http://purl.allotrope.org/voc/afo/REC/2019/12/aft -http://purl.allotrope.org/voc/afo/REC/2019/12/curation -http://purl.allotrope.org/voc/afo/REC/2020/03/aft 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-http://purl.allotrope.org/voc/afo/domain/REC/2020/09/class-coordination -http://purl.allotrope.org/voc/afo/domain/REC/2021/03/chromatography -http://purl.allotrope.org/voc/afo/domain/REC/2021/03/class-coordination -http://purl.allotrope.org/voc/afo/domain/REC/2021/06/chromatography -http://purl.allotrope.org/voc/afo/domain/REC/2021/06/detection -http://purl.allotrope.org/voc/afo/domain/REC/2021/06/injection -http://purl.allotrope.org/voc/afo/domain/REC/2021/06/sampling -http://purl.allotrope.org/voc/afo/domain/WD/2018/04/atomic-spectroscopy -http://purl.allotrope.org/voc/afo/domain/WD/2018/04/x-ray-diffraction -http://purl.allotrope.org/voc/afo/domain/WD/2019/12/function-generator -http://purl.allotrope.org/voc/afo/domain/WD/2020/03/atomic-spectroscopy -http://purl.allotrope.org/voc/afo/domain/WD/2020/03/function-generator -http://purl.allotrope.org/voc/afo/merged/REC/2021/06/merged-and-inferred -http://purl.allotrope.org/voc/afo/merged/REC/2022/03/merged 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+http://eulersharp.sourceforge.net/2003/03swap/quantitiesExtension# +https://w3id.org/ecfo +http://rdf.histograph.io/ +https://w3id.org/lio/v1 +https://spec.edmcouncil.org/fibo/ontology/BE/Corporations/Corporations/ +http://strdf.di.uoa.gr/ontology +http://purl.allotrope.org/voc/afo/REC/2021/03/aft +https://rdf.ag/o/hops +http://rds.posccaesar.org/ontology/lis14/ont/core +http://eprints.org/ontology/ +http://www.loc.gov/premis/rdf/v3/ +http://www.w3.org/ns/prov-o# +http://semanticscience.org/resource/SIO_000855.rdf https://privatealpha.com/ontology/transformation/1# -https://purl.org/esric/sronto -https://purl.org/fidbaudigital/subjects# -https://purl.org/hmas/core +http://vocab.getty.edu/tgn/ +http://vocab.deri.ie/raul +http://www.w3.org/ns/lemon/lexicog +http://purl.org/nemo/doce# +http://data.persee.fr/ontology/persee-ontology/ +https://w3id.org/todo +http://semweb.mmlab.be/ns/odapps +http://data.ordnancesurvey.co.uk/ontology/geometry/ 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+http://purl.obolibrary.org/obo/spd.owl +http://purl.obolibrary.org/obo/opl.owl +http://www.ontologyrepository.com/CommonCoreOntologies/Mid/GeospatialOntology +http://dd.eionet.europa.eu/vocabulary/common/nuts/ +http://www.w3.org/ns/auth/rsa +http://semanticscience.org/resource/SIO_000841.rdf +http://purl.obolibrary.org/obo/zfa.owl +http://cso.kmi.open.ac.uk/schema/cso# +http://purl.org/spar/deo +http://guava.iis.sinica.edu.tw/r4r +http://w3id.org/meta-share/meta-share +https://w3id.org/arco/ontology/location +http://def.seegrid.csiro.au/isotc211/iso19109/2005/feature +http://purl.org/net/ns/ex +https://www.gleif.org/ontology/L1/ +https://www.omg.org/spec/LCC/Countries/AboutCountries/ +http://data.ontotext.com/resource/leak/ +http://www.w3.org/ns/shex# +http://rdfs.org/scot/ns# +http://rdf-vocabulary.ddialliance.org/xkos +http://www.w3.org/ns/prov# +https://w3id.org/xapi/ontology# +https://w3id.org/def/DRUGS4COVID19 +http://www.openlinksw.com/ontology/licenses# 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+http://semanticscience.org/resource/SIO_000017.rdf +http://purl.obolibrary.org/obo/fao.owl +http://purl.org/aspect/ +http://elite.polito.it/ontologies/muo-vocab.owl# https://w3id.org/asbingowl/core -https://w3id.org/associations/vocab -https://w3id.org/bcom -https://w3id.org/bot# -https://w3id.org/bpo -https://w3id.org/brot# -https://w3id.org/cdc -https://w3id.org/citedcat-ap/ +http://semanticscience.org/resource/SIO_000140.rdf +http://www.openlinksw.com/ontology/stepbyguide# +http://purl.org/viso/ +https://w3id.org/opentrafficlights#Ontology +http://vocab.deri.ie/dady +http://elite.polito.it/ontologies/ucum-instances.owl +http://purl.org/NET/biol/botany# +https://dati.isprambiente.it/ontology/core/ +http://semanticscience.org/resource/SIO_000858.rdf +http://lod.taxonconcept.org/ontology/p01/Mammalia/index.owl +http://raw.githubusercontent.com/jmvanel/semantic_forms/master/vocabulary/forms.owl.ttl# +https://w3id.org/eepsa# +https://w3id.org/tern/ontologies/tern/ +https://www.omg.org/spec/LCC/Languages/AboutLanguages/ +https://w3id.org/simulation/data/ +http://semanticscience.org/resource/SIO_000835.rdf +http://purl.obolibrary.org/obo/rex.owl +http://purl.org/carfo# +http://eulersharp.sourceforge.net/2003/03swap/agent +https://w3id.org/seas/BuildingOntology +http://qudt.org/schema/qudt https://w3id.org/cocoon/v1.0 -https://w3id.org/con-tax -https://w3id.org/cto -https://w3id.org/dba/ontology/ -https://w3id.org/def/DRUGS4COVID19 -https://w3id.org/def/basicsemantics-owl -https://w3id.org/def/saref4agri -https://w3id.org/def/saref4bldg -https://w3id.org/def/saref4envi -https://w3id.org/dingo# -https://w3id.org/dio# -https://w3id.org/dot# -https://w3id.org/dpv# -https://w3id.org/dsd +http://www.openlinksw.com/ontology/depot# +http://data.ordnancesurvey.co.uk/ontology/spatialrelations/ +http://ontology.ethereal.cz/irao +http://purl.obolibrary.org/obo/pdumdv.owl +https://w3id.org/todo/tododm +http://www.coinsweb.nl/cbim-2.0.rdf +https://w3id.org/react +http://purl.org/iot/vocab/iot-taxonomy-lite# https://w3id.org/eb# -https://w3id.org/ecfo -https://w3id.org/edwin/ontology/ -https://w3id.org/eep -https://w3id.org/eepsa# -https://w3id.org/eepsa/exn4eepsa -https://w3id.org/eepsa/exr4eepsa -https://w3id.org/eepsa/foi4eepsa# -https://w3id.org/eepsa/p4eepsa -https://w3id.org/env/puv -https://w3id.org/ep-plan -https://w3id.org/example -https://w3id.org/express -https://w3id.org/fdof/ontology -https://w3id.org/fdp/fdp-o# -https://w3id.org/fog -https://w3id.org/fr/def/core# -https://w3id.org/fso# -https://w3id.org/gom -https://w3id.org/hdgi -https://w3id.org/hpont -https://w3id.org/ibp/CTRLont -https://w3id.org/icon/ontology/ -https://w3id.org/iddo -https://w3id.org/idsa/core -https://w3id.org/idsa/core/ -https://w3id.org/ifc/IFC4_ADD1 +http://data-gov.tw.rpi.edu/2009/data-gov-twc.rdf +http://semanticscience.org/resource/SIO_000052.rdf +http://semanticscience.org/resource/SIO_000143.rdf +http://www.w3.org/ns/lemon/synsem +http://www.gsi.dit.upm.es/ontologies/onyx/ns +http://www.linkedmodel.org/schema/dtype +https://spec.edmcouncil.org/fibo/ontology/FND/Arrangements/IdentifiersAndIndices/ +https://www.omg.org/spec/LCC/Countries/ISO3166-2-SubdivisionCodes-Adjunct/ +http://www.observedchange.com/moac/ns# +https://data.nasa.gov/ontologies/atmonto/data +https://w3id.org/semsys/ns/swemls +http://purl.obolibrary.org/obo/geo.owl +https://w3id.org/brot# +http://ns.inria.fr/semed/eduprogression/v1 +http://data.businessgraph.io/ontology +http://melodi.irit.fr/ontologies/eoam.owl +http://purl.obolibrary.org/obo/ddpheno.owl +https://spec.edmcouncil.org/fibo/ontology/FND/Arrangements/Arrangements/ +http://semanticscience.org/resource/SIO_000070.rdf +http://semanticscience.org/resource/SIO_001014.rdf +https://w3id.org/wfont +http://rinfo.lagrummet.se/ns/2008/11/rinfo/publ# +http://www.w3.org/ns/person +https://w3id.org/ttla/ +http://geovocab.org/spatial +http://sparql.cwrc.ca/ontologies/genre +http://purl.obolibrary.org/obo/emapa.owl +http://semanticscience.org/resource/SIO_001118.rdf +http://rdf.muninn-project.org/ontologies/appearances +http://www.kanzaki.com/ns/whois +http://purl.obolibrary.org/obo/gaz.owl +https://sparql.crssnky.xyz/imasrdf/URIs/imas-schema.ttl# +http://www.w3.org/ns/lemon/ontolex +https://w3id.org/riverbench/schema/metadata +http://iais.fraunhofer.de/vocabs/rami# +http://www.linklion.org/ontology +http://purl.oclc.org/NET/ssnx/cf/cf-feature +http://www.opengis.net/ont/gml +https://www.gleif.org/ontology/L2/ +http://purl.org/finlex/schema/laki/ +http://ontology.ethereal.cz/ygo +http://semanticscience.org/resource/SIO_001066.rdf +https://spec.edmcouncil.org/fibo/ontology/FND/Places/Addresses/ +https://budayakb.cs.ui.ac.id/ns +http://semanticscience.org/resource/SIO_000076.rdf +http://semanticscience.org/resource/SIO_000315.rdf +http://vocab.linkeddata.es/datosabiertos/def/transporte/trafico +http://rhizomik.net/ontologies/PlantHealthThreats.owl.ttl +http://purl.obolibrary.org/obo/MFOMD.owl +http://ns.nature.com/terms/ +http://vocab.capes.gov.br/def/vcav# +https://spec.edmcouncil.org/fibo/ontology/BE/OwnershipAndControl/Executives/ +http://purl.obolibrary.org/obo/hp.owl +http://purl.org/goodrelations/v1 +http://www.influenceTracker.com/ontology +https://w3id.org/pbac# +http://qudt.org/vocab/dimensionvector +http://semanticscience.org/resource/SIO_000009.rdf +http://semanticscience.org/resource/SIO_000289.rdf +http://www.openlinksw.com/ontology/machines +https://w3id.org/dsd +http://semanticscience.org/resource/SIO_010378.rdf +http://purl.allotrope.org/voc/afo/domain/REC/2021/06/sampling +http://semanticscience.org/resource/SIO_000991.rdf +http://semanticscience.org/resource/SIO_000302.rdf +http://www.ebusiness-unibw.org/ontologies/eclass/5.1.4/# +https://w3id.org/cc# +http://buzzword.org.uk/rdf/personal-link-types# +http://linkeddata.finki.ukim.mk/lod/ontology/tao# +http://semanticscience.org/resource/SIO_000994.rdf +http://purl.obolibrary.org/obo/sepio.owl +http://semwebquality.org/ontologies/dq-constraints +http://semweb.mmlab.be/ns/stoptimes#Ontology +http://semanticscience.org/resource/SIO_000093.rdf +https://w3id.org/seas/StatisticsOntology +http://semanticscience.org/resource/SIO_001004.rdf +http://wab.uib.no/cost-a32_rdf/wittgenstein_model.owl +http://data.qudt.org/qudt/owl/1.0.0/qudt.owl +http://www.junkwork.net/xml/DocumentList +http://lod.taxonconcept.org/ontology/year.owl https://w3id.org/inrupt/namespace/vocab/authn_provider/ -https://w3id.org/lbd/aec3po/ -https://w3id.org/lbd/aec3po/ontology -https://w3id.org/lbdserver# -https://w3id.org/ldes#Vocabulary -https://w3id.org/legalhtml/ov -https://w3id.org/lio/v1 -https://w3id.org/mifesto# -https://w3id.org/nen2660/shacl/def -https://w3id.org/noria/ontology/ -https://w3id.org/nsd# -https://w3id.org/oac -https://w3id.org/oc/ontology -https://w3id.org/ofo# -https://w3id.org/okn/o/sd -https://w3id.org/okn/o/sdm -https://w3id.org/omg +http://purl.org/net/provenance/types# +https://spec.edmcouncil.org/fibo/ontology/FND/Arrangements/Assessments/ +https://w3id.org/i40/aml# +https://spec.edmcouncil.org/fibo/ontology/BE/LegalEntities/LegalPersons/ +http://semanticscience.org/resource/SIO_000670.rdf +http://purl.org/linked-data/cube +http://www.daml.org/services/owl-s/1.2/generic/Expression.owl +http://www.mygrid.org.uk/ontology +http://purl.allotrope.org/voc/afo/perspective/REC/2021/03/organization +http://www.agfa.com/w3c/2009/anatomy +http://www.ontologydesignpatterns.org/cp/owl/informationrealization.owl +http://semanticchemistry.github.io/semanticchemistry/ontology/cheminf.owl +http://www.w3.org/2006/time +http://semanticscience.org/resource/SIO_000182.rdf +http://semanticscience.org/resource/SIO_010020.rdf +https://w3id.org/fr/def/core# +https://spec.edmcouncil.org/fibo/ontology/FND/Organizations/Organizations/ +http://purl.obolibrary.org/obo/chebi.owl +http://purl.allotrope.org/voc/afo/REC/2020/03/aft +http://semanticscience.org/resource/SIO_000081.rdf +https://saref.etsi.org/saref4watr/ https://w3id.org/ontouml -https://w3id.org/opentrafficlights#Ontology -https://w3id.org/opm# -https://w3id.org/pbac# -https://w3id.org/peco -https://w3id.org/pfeepsa# -https://w3id.org/plasma -https://w3id.org/pmd/co -https://w3id.org/pnv -https://w3id.org/rail/topo# -https://w3id.org/rains -https://w3id.org/rc -https://w3id.org/rdfp/ -https://w3id.org/react -https://w3id.org/requirement-ontology/ontology/core -https://w3id.org/respond# -https://w3id.org/riverbench/schema/documentation -https://w3id.org/riverbench/schema/metadata -https://w3id.org/roar +http://vocab.gtfs.org/terms# +http://theme-e.adaptcentre.ie/dave# +https://spec.edmcouncil.org/fibo/ontology/BE/OwnershipAndControl/CorporateOwnership/ +http://semanticscience.org/resource/SIO_000338.rdf +http://purl.org/ppeo/PPEO.owl +https://raw.githubusercontent.com/enpadasi/Ontology-for-Nutritional-Studies/master/src/ontology/imports/ONS_imports.owl +https://id.kb.se/vocab/ +https://spec.edmcouncil.org/fibo/ontology/FND/ProductsAndServices/PaymentsAndSchedules/ +http://www.daml.org/services/owl-s/1.2/Service.owl +https://saref.etsi.org/saref4wear/ +http://semanticscience.org/resource/SIO_001000.rdf +http://www.ontologydesignpatterns.org/cp/owl/countingas.owl https://w3id.org/sao -https://w3id.org/saref -https://w3id.org/sbeo -https://w3id.org/scholarlydata/ontology/conference-ontology.owl -https://w3id.org/scholarlydata/ontology/indicators-ontology.owl -https://w3id.org/sds#Vocabulary -https://w3id.org/seas/ -https://w3id.org/seas/BatteryOntology -https://w3id.org/seas/BuildingOntology -https://w3id.org/seas/DeviceOntology +http://semanticscience.org/resource/SIO_000115.rdf +http://purl.allotrope.org/voc/qb/REC/2018/10/cube +http://semanticscience.org/resource/SIO_000822.rdf +https://w3id.org/dpv# +http://publications.europa.eu/resource/authority/asset-classification +http://vocab.linkeddata.es/datosabiertos/def/medio-ambiente/contaminacion-acustica +http://qudt.org/2.1/vocab/prefix +https://purl.org/heals/sco/ +http://purl.obolibrary.org/obo/trans.owl +http://ns.softwiki.de/req/2/ +http://biohackathon.org/resource/faldo +http://purl.allotrope.org/voc/afo/perspective/REC/2020/09/molecular-scale +http://def.seegrid.csiro.au/isotc211/iso19115/2003/citation +http://purl.obolibrary.org/obo/ro/subsets/ro-interaction.owl +http://semanticscience.org/resource/SIO_000162.rdf +http://purl.obolibrary.org/obo/po/imports/ncbitaxon_import.owl +http://semanticscience.org/resource/SIO_000295.rdf +https://spec.edmcouncil.org/fibo/ontology/FND/Arrangements/Documents/ +http://www.ontologydesignpatterns.org/cp/owl/semiotics.owl +http://www.w3.org/ns/formats/ +http://purl.allotrope.org/voc/afo/REC/2018/11/aft +http://purl.org/NET/decimalised#d +http://data.posccaesar.org/rdl/ +http://purl.org/ontology/ao/core# +http://purl.org/poso/ +http://purl.org/spar/pso +http://purl.obolibrary.org/obo/oarcs.owl +http://purl.org/NET/ssnext/electricmeters# +http://semanticscience.org/resource/SIO_001007.rdf +http://geovocab.org/geometry +http://bblfish.net/work/atom-owl/2006-06-06/ +http://vocab.deri.ie/scovo +https://w3id.org/seas/OperatingOntology +http://www.opmw.org/ontology/ +http://www.w3.org/ns/spec#AdvisementLevel +http://purl.org/net/hifm/ontology# +http://semanticscience.org/resource/SIO_001373.rdf +http://vocab.ciudadesabiertas.es/def/transporte/autobus +http://purl.allotrope.org/voc/afo/domain/REC/2021/03/class-coordination +http://purl.org/wf4ever/roterms# +https://w3id.org/eep +http://mged.sourceforge.net/ontologies/MGEDOntology.owl https://w3id.org/seas/EvaluationOntology +http://datafoodconsortium.org/ontologies/DFC_FullModel.owl +http://eunis.eea.europa.eu/rdf/species-schema.rdf +http://securitytoolbox.appspot.com/securityAlgorithms# +http://publications.europa.eu/resource/authority/dataset-type +http://purl.org/olia/ubyCat.owl +http://purl.org/ccf/ccf.owl +http://semanticscience.org/resource/SIO_000852.rdf +http://www.w3.org/TR/2003/PR-owl-guide-20031209/wine +http://semanticscience.org/resource/SIO_000429.rdf +http://purl.obolibrary.org/obo/sibo.owl +http://brt.basisregistraties.overheid.nl/def/top10nl +http://www.w3.org/ns/regorg +http://vocab.linkeddata.es/datosabiertos/def/urbanismo-infraestructuras/equipamiento +http://w3id.org/semiot/ontologies/semiot# +http://w3id.org/gaia-x/core# https://w3id.org/seas/FeatureOfInterestOntology -https://w3id.org/seas/ForecastingOntology -https://w3id.org/seas/OperatingOntology -https://w3id.org/seas/QUDTAlignment -https://w3id.org/seas/StatisticsOntology -https://w3id.org/seas/SystemOntology -https://w3id.org/seas/TimeOntology -https://w3id.org/seas/TradingOntology -https://w3id.org/semanticarts/ontology/gistCore -https://w3id.org/semanticarts/ontology/gistMediaTypes -https://w3id.org/semanticarts/ontology/gistPrefixDeclarations -https://w3id.org/semanticarts/ontology/gistSubClassAssertions -https://w3id.org/sense -https://w3id.org/seo# -https://w3id.org/simulation/data/ -https://w3id.org/skgo/modsci# -https://w3id.org/sri -https://w3id.org/stax/ontology -https://w3id.org/steel/ProcessOntology -https://w3id.org/survey-ontology# -https://w3id.org/tern/ontologies/tern -https://w3id.org/tern/ontologies/tern/ -https://w3id.org/timebank -https://w3id.org/todo +http://ontologies.geohive.ie/osi +http://purl.org/NET/dc_owl2dl/terms_od +https://w3id.org/example +http://semanticscience.org/resource/SIO_000106.rdf +http://purl.org/procurement/public-contracts-authority-kinds# +https://w3id.org/rdfp/ +http://www.w3.org/ns/odrl/2/ +http://purl.org/spar/pro/ +https://saref.etsi.org/saref4ehaw/ +https://w3id.org/arco/ontology/catalogue +http://vocabularies.wikipathways.org/wp# +http://w3id.org/roh +http://emmo.info/emmo +http://geni-orca.renci.org/owl/topology.owl +http://timbus.teco.edu/ontologies/DIO.owl +http://purl.org/ontology/prv/core# +https://w3id.org/arco/ontology/denotative-description +http://semanticscience.org/resource/SIO_000107.rdf +http://purl.jp/bio/11/mbgd https://w3id.org/todo/tododfa -https://w3id.org/todo/tododial -https://w3id.org/todo/tododm -https://w3id.org/todo/tododom -https://w3id.org/todo/tododt -https://w3id.org/todo/tododw -https://w3id.org/tree#Ontology -https://w3id.org/tso -https://w3id.org/usability -https://w3id.org/vocab/lingvoj -https://w3id.org/vocab/olca -https://w3id.org/vocab/sdm -https://w3id.org/vocab/xbrll -https://w3id.org/wfont -https://w3id.org/won/core -https://w3id.org/xapi/ontology# -https://www.auto.tuwien.ac.at/downloads/thinkhome/ontology/WeatherOntology.owl -https://www.gleif.org/ontology/Base/ -https://www.gleif.org/ontology/EntityLegalForm/ -https://www.gleif.org/ontology/Geocoding/ -https://www.gleif.org/ontology/L1/ -https://www.gleif.org/ontology/L2/ -https://www.gleif.org/ontology/RegistrationAuthority/ -https://www.gleif.org/ontology/ReportingException/ -https://www.ica.org/standards/RiC/ontology -https://www.omg.org/spec/CTS2/About-CTS2/ -https://www.omg.org/spec/LCC/AboutLCC/ -https://www.omg.org/spec/LCC/Countries/AboutCountries/ -https://www.omg.org/spec/LCC/Countries/CountryRepresentation/ -https://www.omg.org/spec/LCC/Countries/ISO3166-1-CountryCodes-Adjunct/ -https://www.omg.org/spec/LCC/Countries/ISO3166-1-CountryCodes/ -https://www.omg.org/spec/LCC/Countries/ISO3166-2-SubdivisionCodes-Adjunct/ -https://www.omg.org/spec/LCC/Countries/ISO3166-2-SubdivisionCodes/ -https://www.omg.org/spec/LCC/Countries/Regions/AboutRegions/ -https://www.omg.org/spec/LCC/Countries/UN-M49-RegionCodes/ -https://www.omg.org/spec/LCC/Languages/AboutLanguages/ -https://www.omg.org/spec/LCC/Languages/ISO639-1-LanguageCodes/ -https://www.omg.org/spec/LCC/Languages/ISO639-2-LanguageCodes/ -https://www.omg.org/spec/LCC/Languages/LanguageRepresentation/ -https://www.w3.org/2019/wot/hypermedia# -https://www.w3.org/2019/wot/json-schema# -https://www.w3.org/2019/wot/security# -https://www.w3.org/2019/wot/td# -https://www.w3.org/ns/i18n -https://www.w3.org/ns/ldt# -https://www.w3id.org/simulation/ontology/ \ No newline at end of file +http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ma.owl +http://www.mygrid.org.uk/mygrid-moby-service +http://dati.san.beniculturali.it/SAN/TesauroSAN +http://www.agfa.com/w3c/2009/infectiousDisorder# +https://spec.edmcouncil.org/fibo/ontology/FND/DatesAndTimes/Occurrences/ +http://www.data-knowledge.org/dk/ +https://w3id.org/fdof/ontology +http://d3fend.mitre.org/ontologies/d3fend.owl +http://www.yso.fi/onto/allars/ +http://www.w3.org/ns/radion# +http://semanticscience.org/resource/SIO_001396.rdf \ No newline at end of file From 26b3fb97305cc28d3c7d91722203a55df1264e04 Mon Sep 17 00:00:00 2001 From: "jj-author@users.noreply.github.com" Date: Sat, 14 Dec 2024 22:57:06 +0100 Subject: [PATCH 09/31] exclude downloaded files in gitignore --- .gitignore | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.gitignore b/.gitignore index 72a7aac..ad84ea9 100644 --- a/.gitignore +++ b/.gitignore @@ -6,7 +6,7 @@ __pycache__/ ontologytimemachine/utils/archivo_ontologies_download.txt ontologytimemachine/utils/archivo_ontologies_hash.txt - +experiments/downloads* # C extensions *.so From 913abd1d65db393fc421264ca9dfd831adb10817 Mon Sep 17 00:00:00 2001 From: Jenifer Tabita Ciuciu-Kiss Date: Sun, 15 Dec 2024 11:12:53 +0100 Subject: [PATCH 10/31] downlaod over proxy --- experiments/download_ontologies_proxy.py | 178 +++++++++++++++++++++++ 1 file changed, 178 insertions(+) create mode 100644 experiments/download_ontologies_proxy.py diff --git a/experiments/download_ontologies_proxy.py b/experiments/download_ontologies_proxy.py new file mode 100644 index 0000000..929ac7c --- /dev/null +++ b/experiments/download_ontologies_proxy.py @@ -0,0 +1,178 @@ +import os +import requests +import json +import traceback +import time +from urllib.parse import urlparse +from requests.adapters import HTTPAdapter +from requests.packages.urllib3.util.retry import Retry + +def ensure_directory(path): + """Ensure the directory exists.""" + if not os.path.exists(path): + os.makedirs(path) + +def save_file(content, file_path): + """Save content to a file.""" + with open(file_path, "wb") as file: + file.write(content) + +def read_ontologies_from_file(file_path): + """Read ontology URLs from a file where each line is an ontology URL.""" + if not os.path.exists(file_path): + raise FileNotFoundError(f"The file {file_path} does not exist.") + + with open(file_path, "r") as file: + return [line.strip() for line in file if line.strip()] + +def get_causal_chain(exception): + """Get the causal chain of exceptions.""" + chain = [] + while exception: + chain.append({ + "type": type(exception).__name__, + "message": str(exception), + }) + exception = exception.__context__ + return chain + +def get_type_chain(chain): + """Get the type chain as a string separated by '||'.""" + return ' || '.join([entry['type'] for entry in chain]) + +def get_more_specific_type(chain): + """Get the more specific type from the causal chain.""" + if len(chain) > 1: + if chain[1]['type'] == 'MaxRetryError' and len(chain) > 2: + return chain[2]['type'] + return chain[1]['type'] + return None + +def download_ontology(url, formats, base_folder): + """Download an ontology in specified formats and log details.""" + ontology_info = { + "url": url, + "downloads": {}, + } + + headers = { + "Accept": "", + } + + proxies = { + "http": f"http://localhost:8898", + "https": f"https://localhost:8898", + } + + session = requests.Session() + session.max_redirects = 10 + retries = Retry(total=0, backoff_factor=1, status_forcelist=[427]) # wanted to use for 429 originally, but backoff is als applied to connection timeouts and such + session.mount('http://', HTTPAdapter(max_retries=retries)) + session.mount('https://', HTTPAdapter(max_retries=retries)) + + for format_name, mime_type in formats.items(): + print(f'Format name: {format_name}') + try: + headers["Accept"] = mime_type + start_time = time.time() + print(headers) + response = session.get(url, headers=headers, proxies=proxies, timeout=10) + print(response.content) + request_duration = time.time() - start_time + + file_path = "" + if response.status_code == 200: + parsed_url = urlparse(url) + ontology_name = os.path.basename(parsed_url.path) or "ontology" + ontology_url = url.replace('/', '_').replace(':', '_').replace('.', '_') + filename = f"{ontology_url}.{format_name}" + folder_path = os.path.join(base_folder, format_name) + ensure_directory(folder_path) + file_path = os.path.join(folder_path, filename) + + download_start_time = time.time() + save_file(response.content, file_path) + download_duration = time.time() - download_start_time + + ontology_info["downloads"][format_name] = { + "status_code": response.status_code, + "file_path": file_path, + "request_start_time": start_time, + "request_duration": request_duration, + "error": { + "type": None, + "type_more_specific": None, + "type_chain": None, + "message": None, + "traceback": None, + "chain_details": None, + }, + "content_length": response.headers.get('Content-Length'), + "content_lenght_measured": len(response.content), + "content_type": response.headers.get('Content-Type'), + "headers": dict(response.headers), + # "download_duration": download_duration, + } + # else: + # ontology_info["downloads"][format_name] = { + # "status_code": response.status_code, + # "headers": dict(response.headers), + # "error": "Failed to fetch the ontology", + # "request_start_time": start_time, + # "request_duration": request_duration, + # } + + except Exception as e: + request_duration = time.time() - start_time + chain_details = get_causal_chain(e) + ontology_info["downloads"][format_name] = { + "status_code": None, + "file_path": None, + "request_start_time": start_time, + "request_duration": request_duration, + "content_length": None, + "content_lenght_measured": None, + "content_type": None, + "error": { + "type": type(e).__name__, + "type_more_specific": get_more_specific_type(chain_details), + "type_chain": get_type_chain(chain_details), + "message": str(e), + "traceback": traceback.format_exc(), + "chain_details": chain_details, + }, + "headers": None + } + + + return ontology_info + +def main(): + ontology_file = "archivo_ontologies.txt" + urls = read_ontologies_from_file(ontology_file) + + formats = { + "ttl": "text/turtle", + "nt": "application/n-triples", + "rdfxml": "application/rdf+xml", + } + + base_folder = "downloads_proxy" + ensure_directory(base_folder) + + log = [] + + for url in urls: + print(f'URL: {url}') + ontology_log = download_ontology(url, formats, base_folder) + time.sleep(0.2) + log.append(ontology_log) + + log_file = os.path.join(base_folder, "download_proxy_log.json") + with open(log_file, "w") as file: + json.dump(log, file, indent=4) + + print(f"Download complete. Log saved to {log_file}") + +if __name__ == "__main__": + main() From bafe1c70073fd16f12fb6054f40a16552ab15439 Mon Sep 17 00:00:00 2001 From: Jenifer Tabita Ciuciu-Kiss Date: Sun, 15 Dec 2024 11:14:18 +0100 Subject: [PATCH 11/31] change default config --- ontologytimemachine/utils/config.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/ontologytimemachine/utils/config.py b/ontologytimemachine/utils/config.py index b18e207..ae49c33 100644 --- a/ontologytimemachine/utils/config.py +++ b/ontologytimemachine/utils/config.py @@ -90,9 +90,9 @@ class Config: logLevelTimeMachine: LogLevel = LogLevel.DEBUG logLevelBase: LogLevel = LogLevel.INFO ontoFormatConf: OntoFormatConfig = field(default_factory=OntoFormatConfig) - ontoVersion: OntoVersion = OntoVersion.ORIGINAL_FAILOVER_LIVE_LATEST + ontoVersion: OntoVersion = OntoVersion.LATEST_ARCHIVED restrictedAccess: bool = False - clientConfigViaProxyAuth: ClientConfigViaProxyAuth = ClientConfigViaProxyAuth.REQUIRED + clientConfigViaProxyAuth: ClientConfigViaProxyAuth = ClientConfigViaProxyAuth.IGNORE httpsInterception: HttpsInterception = HttpsInterception.ALL disableRemovingRedirects: bool = False timestamp: str = "" From 3092e717ec964adae6ee5fed4ad93240191975f4 Mon Sep 17 00:00:00 2001 From: Jenifer Tabita Ciuciu-Kiss Date: Sun, 15 Dec 2024 11:17:00 +0100 Subject: [PATCH 12/31] remove prints --- experiments/download_ontologies_proxy.py | 3 --- 1 file changed, 3 deletions(-) diff --git a/experiments/download_ontologies_proxy.py b/experiments/download_ontologies_proxy.py index 929ac7c..673af0b 100644 --- a/experiments/download_ontologies_proxy.py +++ b/experiments/download_ontologies_proxy.py @@ -71,13 +71,10 @@ def download_ontology(url, formats, base_folder): session.mount('https://', HTTPAdapter(max_retries=retries)) for format_name, mime_type in formats.items(): - print(f'Format name: {format_name}') try: headers["Accept"] = mime_type start_time = time.time() - print(headers) response = session.get(url, headers=headers, proxies=proxies, timeout=10) - print(response.content) request_duration = time.time() - start_time file_path = "" From f61a164b2c6de40113391aab0a2736f76ba237c0 Mon Sep 17 00:00:00 2001 From: Jenifer Tabita Ciuciu-Kiss Date: Mon, 16 Dec 2024 13:17:05 +0100 Subject: [PATCH 13/31] add cert to get request --- experiments/download_ontologies_proxy.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/experiments/download_ontologies_proxy.py b/experiments/download_ontologies_proxy.py index 673af0b..139da88 100644 --- a/experiments/download_ontologies_proxy.py +++ b/experiments/download_ontologies_proxy.py @@ -63,6 +63,8 @@ def download_ontology(url, formats, base_folder): "http": f"http://localhost:8898", "https": f"https://localhost:8898", } + + cacert_path = "ca-cert.pem" session = requests.Session() session.max_redirects = 10 @@ -74,7 +76,7 @@ def download_ontology(url, formats, base_folder): try: headers["Accept"] = mime_type start_time = time.time() - response = session.get(url, headers=headers, proxies=proxies, timeout=10) + response = session.get(url, proxies=proxies, verify=cacert_path, timeout=10) request_duration = time.time() - start_time file_path = "" From 370868fb31c29fb8f55664a5536f0e6feb069326 Mon Sep 17 00:00:00 2001 From: Jenifer Tabita Ciuciu-Kiss Date: Tue, 17 Dec 2024 18:42:28 +0100 Subject: [PATCH 14/31] add script to parse ontologies --- experiments/parse_ontologies.py | 71 +++++++++++++++++++++++++++++++++ 1 file changed, 71 insertions(+) create mode 100644 experiments/parse_ontologies.py diff --git a/experiments/parse_ontologies.py b/experiments/parse_ontologies.py new file mode 100644 index 0000000..5d1ed9c --- /dev/null +++ b/experiments/parse_ontologies.py @@ -0,0 +1,71 @@ +import json +import subprocess +import os + +ontology_map = { + 'nt': 'ntripes', + 'ttl': 'turtle', + 'rdfxml': 'rdfxml' +} + +def process_ontologies(json_file_path, output_file_path): + # Load the JSON file + with open(json_file_path, 'r') as f: + ontologies = json.load(f) + + for ontology in ontologies: + for format_type, format_data in ontology["downloads"].items(): + # Extract the file path and format + file_path = format_data.get("file_path") + status_code = format_data.get("status_code") + + if file_path and status_code == 200: + # Prepare the command + command = [ + "cat", + file_path, + "|", + "rapper", + f"-i {format_type}", + f"-o ntriples", + "-", + ontology["url"] + ] + + # Execute the command + try: + result = subprocess.run( + " ".join(command), + shell=True, + capture_output=True, + text=True + ) + + # Check the result and update the JSON + if result.returncode == 0: + output = result.stdout + num_triples = output.count("\n") + format_data["parsed_triples"] = num_triples + format_data["rapper_error"] = None + else: + format_data["parsed_triples"] = 0 + format_data["rapper_error"] = result.stderr.strip() + + except Exception as e: + format_data["parsed_triples"] = 0 + format_data["rapper_error"] = str(e) + + # Save the updated JSON + with open(output_file_path, 'w') as f: + json.dump(ontologies, f, indent=4) + +if __name__ == "__main__": + # Replace these paths with your actual file paths + input_json_path = "downloads_proxy/download_proxy_log.json" + output_json_path = "downloads_proxy/download_proxy_log_extended.json" + + if os.path.exists(input_json_path): + process_ontologies(input_json_path, output_json_path) + print(f"Processed ontologies. Updated JSON saved to {output_json_path}") + else: + print(f"Input file {input_json_path} not found.") From ed686e640ff83284c8812c834fac31ecd4aa18c0 Mon Sep 17 00:00:00 2001 From: Jenifer Tabita Ciuciu-Kiss Date: Tue, 17 Dec 2024 18:51:27 +0100 Subject: [PATCH 15/31] fixes --- experiments/parse_ontologies.py | 11 +++++++---- 1 file changed, 7 insertions(+), 4 deletions(-) diff --git a/experiments/parse_ontologies.py b/experiments/parse_ontologies.py index 5d1ed9c..1986ca6 100644 --- a/experiments/parse_ontologies.py +++ b/experiments/parse_ontologies.py @@ -17,9 +17,12 @@ def process_ontologies(json_file_path, output_file_path): for format_type, format_data in ontology["downloads"].items(): # Extract the file path and format file_path = format_data.get("file_path") + file_path = file_path.replace('downloads_proxy-test', 'downloads_proxy-fixedCA') status_code = format_data.get("status_code") - - if file_path and status_code == 200: + if not file_path: + format_data["parsed_triples"] = None + format_data["rapper_error"] = None + elif file_path and status_code == 200: # Prepare the command command = [ "cat", @@ -61,8 +64,8 @@ def process_ontologies(json_file_path, output_file_path): if __name__ == "__main__": # Replace these paths with your actual file paths - input_json_path = "downloads_proxy/download_proxy_log.json" - output_json_path = "downloads_proxy/download_proxy_log_extended.json" + input_json_path = "downloads_proxy-fixedCA/download_nt_proxy_log.json" + output_json_path = "downloads_proxy-fixedCA/download_nt_proxy_log_extended.json" if os.path.exists(input_json_path): process_ontologies(input_json_path, output_json_path) From c052c99575494905d9a3c687485924fef0b64d1e Mon Sep 17 00:00:00 2001 From: Jenifer Tabita Ciuciu-Kiss Date: Tue, 17 Dec 2024 18:55:45 +0100 Subject: [PATCH 16/31] add print --- experiments/parse_ontologies.py | 1 + 1 file changed, 1 insertion(+) diff --git a/experiments/parse_ontologies.py b/experiments/parse_ontologies.py index 1986ca6..9598e5f 100644 --- a/experiments/parse_ontologies.py +++ b/experiments/parse_ontologies.py @@ -14,6 +14,7 @@ def process_ontologies(json_file_path, output_file_path): ontologies = json.load(f) for ontology in ontologies: + print(f'URL: {ontology["url"]}') for format_type, format_data in ontology["downloads"].items(): # Extract the file path and format file_path = format_data.get("file_path") From 75c97db23853472dde8398474cccb17e5c02690f Mon Sep 17 00:00:00 2001 From: Jenifer Tabita Ciuciu-Kiss Date: Tue, 17 Dec 2024 18:58:00 +0100 Subject: [PATCH 17/31] fixes --- experiments/parse_ontologies.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/experiments/parse_ontologies.py b/experiments/parse_ontologies.py index 9598e5f..99f646a 100644 --- a/experiments/parse_ontologies.py +++ b/experiments/parse_ontologies.py @@ -18,12 +18,12 @@ def process_ontologies(json_file_path, output_file_path): for format_type, format_data in ontology["downloads"].items(): # Extract the file path and format file_path = format_data.get("file_path") - file_path = file_path.replace('downloads_proxy-test', 'downloads_proxy-fixedCA') status_code = format_data.get("status_code") if not file_path: format_data["parsed_triples"] = None format_data["rapper_error"] = None elif file_path and status_code == 200: + file_path = file_path.replace('downloads_proxy-test', 'downloads_proxy-fixedCA') # Prepare the command command = [ "cat", From 7b2d44fe484f8975e82140f773abbb2da8315b1b Mon Sep 17 00:00:00 2001 From: Jenifer Tabita Ciuciu-Kiss Date: Tue, 17 Dec 2024 18:59:05 +0100 Subject: [PATCH 18/31] fixes --- experiments/parse_ontologies.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/experiments/parse_ontologies.py b/experiments/parse_ontologies.py index 99f646a..552bb83 100644 --- a/experiments/parse_ontologies.py +++ b/experiments/parse_ontologies.py @@ -30,7 +30,7 @@ def process_ontologies(json_file_path, output_file_path): file_path, "|", "rapper", - f"-i {format_type}", + f"-i {ontology_map[format_type]}", f"-o ntriples", "-", ontology["url"] From fbbee6382f4b1ab6dd8f470d837b329b3e073ffd Mon Sep 17 00:00:00 2001 From: Jenifer Tabita Ciuciu-Kiss Date: Tue, 17 Dec 2024 19:01:50 +0100 Subject: [PATCH 19/31] fixes --- experiments/parse_ontologies.py | 1 + 1 file changed, 1 insertion(+) diff --git a/experiments/parse_ontologies.py b/experiments/parse_ontologies.py index 552bb83..d9bbe2f 100644 --- a/experiments/parse_ontologies.py +++ b/experiments/parse_ontologies.py @@ -35,6 +35,7 @@ def process_ontologies(json_file_path, output_file_path): "-", ontology["url"] ] + print(command) # Execute the command try: From 34076f8b944b18891dbf7c2c8062dec7685dcafd Mon Sep 17 00:00:00 2001 From: Jenifer Tabita Ciuciu-Kiss Date: Tue, 17 Dec 2024 19:02:43 +0100 Subject: [PATCH 20/31] fixes --- experiments/parse_ontologies.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/experiments/parse_ontologies.py b/experiments/parse_ontologies.py index d9bbe2f..6bc628c 100644 --- a/experiments/parse_ontologies.py +++ b/experiments/parse_ontologies.py @@ -35,7 +35,7 @@ def process_ontologies(json_file_path, output_file_path): "-", ontology["url"] ] - print(command) + print(" ".join(command)) # Execute the command try: From 3583c98e8e15f77e1c6e411591608d7da17b3887 Mon Sep 17 00:00:00 2001 From: Jenifer Tabita Ciuciu-Kiss Date: Tue, 17 Dec 2024 20:41:50 +0100 Subject: [PATCH 21/31] check for uri --- experiments/parse_ontologies.py | 21 +++++++++++++++++++-- 1 file changed, 19 insertions(+), 2 deletions(-) diff --git a/experiments/parse_ontologies.py b/experiments/parse_ontologies.py index 6bc628c..d0bc549 100644 --- a/experiments/parse_ontologies.py +++ b/experiments/parse_ontologies.py @@ -9,18 +9,27 @@ } def process_ontologies(json_file_path, output_file_path): + def is_uri_in_subject(triples, ontology_uri): + """ + Check if the ontology URI appears in the subject position of any triple. + """ + subject_pattern = re.compile(rf"^<{re.escape(ontology_uri)}>") + return any(subject_pattern.match(triple) for triple in triples) + # Load the JSON file with open(json_file_path, 'r') as f: ontologies = json.load(f) for ontology in ontologies: - print(f'URL: {ontology["url"]}') + ontology_url = ontology["url"] + print(f'URL: {ontology_url}') for format_type, format_data in ontology["downloads"].items(): # Extract the file path and format file_path = format_data.get("file_path") status_code = format_data.get("status_code") if not file_path: format_data["parsed_triples"] = None + format_data["uri_in_subject_position"] = None format_data["rapper_error"] = None elif file_path and status_code == 200: file_path = file_path.replace('downloads_proxy-test', 'downloads_proxy-fixedCA') @@ -33,7 +42,7 @@ def process_ontologies(json_file_path, output_file_path): f"-i {ontology_map[format_type]}", f"-o ntriples", "-", - ontology["url"] + ontology_url ] print(" ".join(command)) @@ -45,19 +54,27 @@ def process_ontologies(json_file_path, output_file_path): capture_output=True, text=True ) + + # Check the result and update the JSON if result.returncode == 0: output = result.stdout + triples = output.splitlines() num_triples = output.count("\n") + + uri_in_subject = is_uri_in_subject(triples, ontology_url) + format_data["uri_in_subject_position"] = uri_in_subject format_data["parsed_triples"] = num_triples format_data["rapper_error"] = None else: format_data["parsed_triples"] = 0 + format_data["uri_in_subject_position"] = False format_data["rapper_error"] = result.stderr.strip() except Exception as e: format_data["parsed_triples"] = 0 + format_data["uri_in_subject_position"] = False format_data["rapper_error"] = str(e) # Save the updated JSON From 5c8357aa42cd23b80bdace0f4a7487d610c32228 Mon Sep 17 00:00:00 2001 From: Jenifer Tabita Ciuciu-Kiss Date: Tue, 17 Dec 2024 20:43:06 +0100 Subject: [PATCH 22/31] check for uri --- experiments/parse_ontologies.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/experiments/parse_ontologies.py b/experiments/parse_ontologies.py index d0bc549..7e4cbab 100644 --- a/experiments/parse_ontologies.py +++ b/experiments/parse_ontologies.py @@ -3,7 +3,7 @@ import os ontology_map = { - 'nt': 'ntripes', + 'nt': 'ntriples', 'ttl': 'turtle', 'rdfxml': 'rdfxml' } From a272008b0234f6a306856f167448a660fea5b21d Mon Sep 17 00:00:00 2001 From: Jenifer Tabita Ciuciu-Kiss Date: Tue, 17 Dec 2024 20:46:14 +0100 Subject: [PATCH 23/31] check for uri --- experiments/parse_ontologies.py | 1 + 1 file changed, 1 insertion(+) diff --git a/experiments/parse_ontologies.py b/experiments/parse_ontologies.py index 7e4cbab..0c53144 100644 --- a/experiments/parse_ontologies.py +++ b/experiments/parse_ontologies.py @@ -1,6 +1,7 @@ import json import subprocess import os +import re ontology_map = { 'nt': 'ntriples', From 8a630ae46dfe50d155f4067517927d143e503e00 Mon Sep 17 00:00:00 2001 From: Jenifer Tabita Ciuciu-Kiss Date: Tue, 17 Dec 2024 21:29:31 +0100 Subject: [PATCH 24/31] fix header issue --- experiments/download_ontologies_proxy.py | 15 ++++++++------- 1 file changed, 8 insertions(+), 7 deletions(-) diff --git a/experiments/download_ontologies_proxy.py b/experiments/download_ontologies_proxy.py index 139da88..6dcca6b 100644 --- a/experiments/download_ontologies_proxy.py +++ b/experiments/download_ontologies_proxy.py @@ -61,22 +61,23 @@ def download_ontology(url, formats, base_folder): proxies = { "http": f"http://localhost:8898", - "https": f"https://localhost:8898", + "https": f"http://localhost:8898", } cacert_path = "ca-cert.pem" - session = requests.Session() - session.max_redirects = 10 - retries = Retry(total=0, backoff_factor=1, status_forcelist=[427]) # wanted to use for 429 originally, but backoff is als applied to connection timeouts and such - session.mount('http://', HTTPAdapter(max_retries=retries)) - session.mount('https://', HTTPAdapter(max_retries=retries)) + #session = requests.Session() + #session.max_redirects = 10 + #retries = Retry(total=0, backoff_factor=1, status_forcelist=[427]) # wanted to use for 429 originally, but backoff is als applied to connection timeouts and such + #session.mount('http://', HTTPAdapter(max_retries=retries)) + #session.mount('https://', HTTPAdapter(max_retries=retries)) for format_name, mime_type in formats.items(): try: + print(mime_type) headers["Accept"] = mime_type start_time = time.time() - response = session.get(url, proxies=proxies, verify=cacert_path, timeout=10) + response = requests.get(url, proxies=proxies, headers=headers, verify=cacert_path, timeout=10) request_duration = time.time() - start_time file_path = "" From 4ae9232d1cf99da668ef1920048db8af1f3507de Mon Sep 17 00:00:00 2001 From: Jenifer Tabita Ciuciu-Kiss Date: Tue, 17 Dec 2024 22:13:51 +0100 Subject: [PATCH 25/31] fixes --- experiments/download_ontologies_proxy.py | 13 +++++++------ 1 file changed, 7 insertions(+), 6 deletions(-) diff --git a/experiments/download_ontologies_proxy.py b/experiments/download_ontologies_proxy.py index 6dcca6b..bb02b29 100644 --- a/experiments/download_ontologies_proxy.py +++ b/experiments/download_ontologies_proxy.py @@ -66,17 +66,18 @@ def download_ontology(url, formats, base_folder): cacert_path = "ca-cert.pem" - #session = requests.Session() - #session.max_redirects = 10 - #retries = Retry(total=0, backoff_factor=1, status_forcelist=[427]) # wanted to use for 429 originally, but backoff is als applied to connection timeouts and such - #session.mount('http://', HTTPAdapter(max_retries=retries)) - #session.mount('https://', HTTPAdapter(max_retries=retries)) + # session = requests.Session() + # session.max_redirects = 10 + # retries = Retry(total=0, backoff_factor=1, status_forcelist=[427]) # wanted to use for 429 originally, but backoff is als applied to connection timeouts and such + # session.mount('http://', HTTPAdapter(max_retries=retries)) + # session.mount('https://', HTTPAdapter(max_retries=retries)) for format_name, mime_type in formats.items(): try: print(mime_type) headers["Accept"] = mime_type start_time = time.time() + #response = session.get(url, proxies=proxies, headers=headers, verify=cacert_path, timeout=10) response = requests.get(url, proxies=proxies, headers=headers, verify=cacert_path, timeout=10) request_duration = time.time() - start_time @@ -157,7 +158,7 @@ def main(): "rdfxml": "application/rdf+xml", } - base_folder = "downloads_proxy" + base_folder = "downloads_proxy_requests" ensure_directory(base_folder) log = [] From 36f4f2e20288349dc83a2772c93ee5965b835a81 Mon Sep 17 00:00:00 2001 From: Jenifer Tabita Ciuciu-Kiss Date: Tue, 17 Dec 2024 22:17:14 +0100 Subject: [PATCH 26/31] fixes --- experiments/download_ontologies_proxy.py | 1 - 1 file changed, 1 deletion(-) diff --git a/experiments/download_ontologies_proxy.py b/experiments/download_ontologies_proxy.py index bb02b29..9695587 100644 --- a/experiments/download_ontologies_proxy.py +++ b/experiments/download_ontologies_proxy.py @@ -74,7 +74,6 @@ def download_ontology(url, formats, base_folder): for format_name, mime_type in formats.items(): try: - print(mime_type) headers["Accept"] = mime_type start_time = time.time() #response = session.get(url, proxies=proxies, headers=headers, verify=cacert_path, timeout=10) From c4e62d30b7ca94aa00a5c4a87f593c415d8aaaf3 Mon Sep 17 00:00:00 2001 From: Jenifer Tabita Ciuciu-Kiss Date: Wed, 18 Dec 2024 00:05:09 +0100 Subject: [PATCH 27/31] aggregation script --- experiments/aggregate_results.py | 126 +++++++++++++++++++++++++++++++ 1 file changed, 126 insertions(+) create mode 100644 experiments/aggregate_results.py diff --git a/experiments/aggregate_results.py b/experiments/aggregate_results.py new file mode 100644 index 0000000..6d5ac98 --- /dev/null +++ b/experiments/aggregate_results.py @@ -0,0 +1,126 @@ +import json +from collections import defaultdict + +# Content type mapping for each format +content_type_mapping = { + "ttl": "text/turtle", + "nt": "application/n-triples", + "rdfxml": "application/rdf+xml", +} + +# Load the JSON data from the correct file path +file_path = 'downloads-200ms-shuffled/download_log_extended.json' +with open(file_path, 'r') as f: + data = json.load(f) + +# Initialize the aggregation dictionary for both proxy and no-proxy scenarios +aggregation = { + "w/o proxy": defaultdict(lambda: defaultdict(int)), + "with proxy": defaultdict(lambda: defaultdict(int)), +} + +# Define categories for table +categories = [ + "unsuccessful payload retrieval", + "DNS issue", + "Con. / transport issue", + "TLS cert issue", + "Too many redirects", + "Non-200 HTTP code", + "Successful request (code 200)", + "0 bytes content", + "no rdf content (0 triples parsable)", + "partially parsable rdf-content", + "fully parsable rdf-content", + "describes requested ont.", + "no RDF mimetype", + "confused RDF mimetype", + "correct mimetype", +] + +# Map error types to categories +error_mapping = { + "NameResolutionError": "DNS issue", + "ConnectionError": "Con. / transport issue", + "TimeoutError": "Con. / transport issue", + "ConnectTimeoutError": "Con. / transport issue", + "NewConnectionError": "Con. / transport issue", + "ReadTimeoutError": "Con. / transport issue", + "RemoteDisconnected": "Con. / transport issue", + "SSLError": "TLS cert issue", + "TooManyRedirects": "Too many redirects", + "HTTPError": "Non-200 HTTP code", +} + +# Process each entry in the JSON data +for entry in data: + url = entry.get("url", "") + downloads = entry.get("downloads", {}) + + for format, details in downloads.items(): + # Check if proxy was used + is_proxy = details.get("proxy_used", False) + proxy_key = "with proxy" if is_proxy else "w/o proxy" + + # Extract details + status_code = details.get("status_code") + parsed_triples = details.get("parsed_triples", 0) + content_length = details.get("content_lenght_measured", 0) + content_type = details.get("content_type", "").lower() if details.get("content_type") else None + uri_in_subject_position = details.get("uri_in_subject_position", False) + rapper_error = details.get("rapper_error") + error = details.get("error", {}) + + # Check for errors and categorize them + if error and error.get("type_more_specific"): + error_type = error["type_more_specific"] + category = error_mapping.get(error_type, None) + if category: + aggregation[proxy_key][category][format] += 1 + aggregation[proxy_key]["unsuccessful payload retrieval"][format] += 1 + else: + # Print uncategorized errors + print(f"Uncategorized error type_more_specific: {error_type}") + continue + + # Handle non-200 status codes + if status_code != 200: + aggregation[proxy_key]["Non-200 HTTP code"][format] += 1 + aggregation[proxy_key]["unsuccessful payload retrieval"][format] += 1 + continue + + # Successful request (status code 200) + aggregation[proxy_key]["Successful request (code 200)"][format] += 1 + + # Check for partially parsable RDF-content + if parsed_triples > 0 and rapper_error: + aggregation[proxy_key]["partially parsable rdf-content"][format] += 1 + continue + + # Count content conditions for successful requests + if content_length == 0: + aggregation[proxy_key]["0 bytes content"][format] += 1 + elif parsed_triples == 0: + aggregation[proxy_key]["no rdf content (0 triples parsable)"][format] += 1 + elif parsed_triples >= 1000: + aggregation[proxy_key]["fully parsable rdf-content"][format] += 1 + if uri_in_subject_position: + aggregation[proxy_key]["describes requested ont."][format] += 1 + # Check MIME types for describing ontologies + if content_type == content_type_mapping.get(format, ""): + aggregation[proxy_key]["correct mimetype"][format] += 1 + elif content_type in content_type_mapping.values(): + aggregation[proxy_key]["confused RDF mimetype"][format] += 1 + else: + aggregation[proxy_key]["no RDF mimetype"][format] += 1 + +# Print the table +table_headers = ["Accessibility Status", "turtle", "ntriples", "rdfxml"] +for proxy_key in ["w/o proxy", "with proxy"]: + print(f"\nRequested format {proxy_key}") + print(f"{table_headers[0]:<40} {table_headers[1]:<10} {table_headers[2]:<10} {table_headers[3]:<10}") + for category in categories: + row = [category] + for format in ["ttl", "nt", "rdfxml"]: + row.append(aggregation[proxy_key][category].get(format, 0)) + print(f"{row[0]:<40} {row[1]:<10} {row[2]:<10} {row[3]:<10}") From 30b6921b753c78aa2d7f529640c8877f23b89d25 Mon Sep 17 00:00:00 2001 From: Jenifer Tabita Ciuciu-Kiss Date: Wed, 18 Dec 2024 02:15:36 +0100 Subject: [PATCH 28/31] finalize aggregation script --- experiments/aggregate_results.py | 179 ++++++++++++++++++------------- 1 file changed, 102 insertions(+), 77 deletions(-) diff --git a/experiments/aggregate_results.py b/experiments/aggregate_results.py index 6d5ac98..9f02f6b 100644 --- a/experiments/aggregate_results.py +++ b/experiments/aggregate_results.py @@ -5,13 +5,21 @@ content_type_mapping = { "ttl": "text/turtle", "nt": "application/n-triples", - "rdfxml": "application/rdf+xml", + "rdfxml": ["application/rdf+xml", "application/xml"], # Updated to include multiple accepted types } -# Load the JSON data from the correct file path -file_path = 'downloads-200ms-shuffled/download_log_extended.json' -with open(file_path, 'r') as f: - data = json.load(f) +rdf_mimtetypes = ['text/turtle', 'application/n-triples', 'application/rdf+xml', 'application/xml'] + +# File paths for the logs +no_proxy_file_path = 'downloads-200ms-shuffled/download_log_extended.json' +proxy_file_path = 'downloads_proxy_requests/download_proxy_log_extended.json' + +# Load the JSON data for no-proxy and with-proxy scenarios +with open(no_proxy_file_path, 'r') as f: + no_proxy_data = json.load(f) + +with open(proxy_file_path, 'r') as f: + proxy_data = json.load(f) # Initialize the aggregation dictionary for both proxy and no-proxy scenarios aggregation = { @@ -36,83 +44,97 @@ "no RDF mimetype", "confused RDF mimetype", "correct mimetype", + "correct for all 3 formats", ] -# Map error types to categories -error_mapping = { - "NameResolutionError": "DNS issue", - "ConnectionError": "Con. / transport issue", - "TimeoutError": "Con. / transport issue", - "ConnectTimeoutError": "Con. / transport issue", - "NewConnectionError": "Con. / transport issue", - "ReadTimeoutError": "Con. / transport issue", - "RemoteDisconnected": "Con. / transport issue", - "SSLError": "TLS cert issue", - "TooManyRedirects": "Too many redirects", - "HTTPError": "Non-200 HTTP code", -} +# Error type to category mapping logic +def map_error_to_category(error_type, type_more_specific): + if error_type == "TooManyRedirects": + return "Too many redirects" + elif error_type == "SSLError": + return "TLS cert issue" + elif error_type == "ConnectionError": + if type_more_specific == "NameResolutionError": + return "DNS issue" + else: + return "Con. / transport issue" + elif error_type == "ConnectTimeout": + return "Con. / transport issue" + else: + return "Con. / transport issue" -# Process each entry in the JSON data -for entry in data: - url = entry.get("url", "") - downloads = entry.get("downloads", {}) - - for format, details in downloads.items(): - # Check if proxy was used - is_proxy = details.get("proxy_used", False) - proxy_key = "with proxy" if is_proxy else "w/o proxy" - - # Extract details - status_code = details.get("status_code") - parsed_triples = details.get("parsed_triples", 0) - content_length = details.get("content_lenght_measured", 0) - content_type = details.get("content_type", "").lower() if details.get("content_type") else None - uri_in_subject_position = details.get("uri_in_subject_position", False) - rapper_error = details.get("rapper_error") - error = details.get("error", {}) - - # Check for errors and categorize them - if error and error.get("type_more_specific"): - error_type = error["type_more_specific"] - category = error_mapping.get(error_type, None) - if category: +# Check if MIME type is valid for the format +def is_valid_mimetype(format, content_type): + expected_types = content_type_mapping.get(format, []) + if isinstance(expected_types, list): + return content_type in expected_types + return content_type == expected_types + +# Process data for aggregation +def process_data(data, proxy_key): + for entry in data: + url = entry.get("url", "") + downloads = entry.get("downloads", {}) + formats_correct = set() + + for format, details in downloads.items(): + # Extract details + status_code = details.get("status_code") + parsed_triples = details.get("parsed_triples", 0) + content_length = details.get("content_lenght_measured", 0) + content_type = details.get("content_type", "").lower() if details.get("content_type") else None + uri_in_subject_position = details.get("uri_in_subject_position", False) + rapper_error = details.get("rapper_error") + error = details.get("error", {}) + + # Check for errors and categorize them + if error and error.get("type"): + error_type = error["type"] + type_more_specific = error.get("type_more_specific") + category = map_error_to_category(error_type, type_more_specific) aggregation[proxy_key][category][format] += 1 aggregation[proxy_key]["unsuccessful payload retrieval"][format] += 1 - else: - # Print uncategorized errors - print(f"Uncategorized error type_more_specific: {error_type}") - continue - - # Handle non-200 status codes - if status_code != 200: - aggregation[proxy_key]["Non-200 HTTP code"][format] += 1 - aggregation[proxy_key]["unsuccessful payload retrieval"][format] += 1 - continue - - # Successful request (status code 200) - aggregation[proxy_key]["Successful request (code 200)"][format] += 1 - - # Check for partially parsable RDF-content - if parsed_triples > 0 and rapper_error: - aggregation[proxy_key]["partially parsable rdf-content"][format] += 1 - continue - - # Count content conditions for successful requests - if content_length == 0: - aggregation[proxy_key]["0 bytes content"][format] += 1 - elif parsed_triples == 0: - aggregation[proxy_key]["no rdf content (0 triples parsable)"][format] += 1 - elif parsed_triples >= 1000: - aggregation[proxy_key]["fully parsable rdf-content"][format] += 1 - if uri_in_subject_position: - aggregation[proxy_key]["describes requested ont."][format] += 1 - # Check MIME types for describing ontologies - if content_type == content_type_mapping.get(format, ""): - aggregation[proxy_key]["correct mimetype"][format] += 1 - elif content_type in content_type_mapping.values(): - aggregation[proxy_key]["confused RDF mimetype"][format] += 1 - else: - aggregation[proxy_key]["no RDF mimetype"][format] += 1 + continue + + # Handle non-200 status codes + if status_code != 200: + aggregation[proxy_key]["Non-200 HTTP code"][format] += 1 + aggregation[proxy_key]["unsuccessful payload retrieval"][format] += 1 + continue + + # Successful request (status code 200) + aggregation[proxy_key]["Successful request (code 200)"][format] += 1 + + # Categorize successful ontologies + if content_length == 0: + aggregation[proxy_key]["0 bytes content"][format] += 1 + elif parsed_triples == 0: + aggregation[proxy_key]["no rdf content (0 triples parsable)"][format] += 1 + elif parsed_triples > 0 and rapper_error: + aggregation[proxy_key]["partially parsable rdf-content"][format] += 1 + if uri_in_subject_position: + aggregation[proxy_key]["describes requested ont."][format] += 1 + elif parsed_triples > 0 and not rapper_error: + aggregation[proxy_key]["fully parsable rdf-content"][format] += 1 + if uri_in_subject_position: + aggregation[proxy_key]["describes requested ont."][format] += 1 + + # Check MIME types only for ontologies that describe the requested ontology + if content_type and is_valid_mimetype(format, content_type): + aggregation[proxy_key]["correct mimetype"][format] += 1 + formats_correct.add(format) + elif content_type and content_type in rdf_mimtetypes: + aggregation[proxy_key]["confused RDF mimetype"][format] += 1 + else: + aggregation[proxy_key]["no RDF mimetype"][format] += 1 + + # Check if ontology is correct for all 3 formats + if formats_correct == {"ttl", "nt", "rdfxml"}: + aggregation[proxy_key]["correct for all 3 formats"]["all"] += 1 + +# Process both datasets +process_data(no_proxy_data, "w/o proxy") +process_data(proxy_data, "with proxy") # Print the table table_headers = ["Accessibility Status", "turtle", "ntriples", "rdfxml"] @@ -124,3 +146,6 @@ for format in ["ttl", "nt", "rdfxml"]: row.append(aggregation[proxy_key][category].get(format, 0)) print(f"{row[0]:<40} {row[1]:<10} {row[2]:<10} {row[3]:<10}") + # Print total for "correct for all 3 formats" + correct_all = aggregation[proxy_key]["correct for all 3 formats"]["all"] + print(f"{'correct for all 3 formats':<40} {correct_all:<10}") From ba1933e30e9126a1a9be5ef650b9ed1a0a1bed42 Mon Sep 17 00:00:00 2001 From: Jenifer Tabita Ciuciu-Kiss Date: Wed, 18 Dec 2024 02:28:29 +0100 Subject: [PATCH 29/31] mimetype pain --- experiments/aggregate_results.py | 19 ++++++++++++++----- 1 file changed, 14 insertions(+), 5 deletions(-) diff --git a/experiments/aggregate_results.py b/experiments/aggregate_results.py index 9f02f6b..fd2aeba 100644 --- a/experiments/aggregate_results.py +++ b/experiments/aggregate_results.py @@ -64,11 +64,20 @@ def map_error_to_category(error_type, type_more_specific): return "Con. / transport issue" # Check if MIME type is valid for the format -def is_valid_mimetype(format, content_type): +def is_correct_mimetype(format, content_type): expected_types = content_type_mapping.get(format, []) if isinstance(expected_types, list): - return content_type in expected_types - return content_type == expected_types + for expected_type in expected_types: + if expected_type in content_type: + return True + return False + return expected_types in content_type + +def is_rdf_mimetype(content_type): + for rdf_mimetype in rdf_mimtetypes: + if rdf_mimetype in content_type: + return True + return False # Process data for aggregation def process_data(data, proxy_key): @@ -120,10 +129,10 @@ def process_data(data, proxy_key): aggregation[proxy_key]["describes requested ont."][format] += 1 # Check MIME types only for ontologies that describe the requested ontology - if content_type and is_valid_mimetype(format, content_type): + if content_type and is_correct_mimetype(format, content_type): aggregation[proxy_key]["correct mimetype"][format] += 1 formats_correct.add(format) - elif content_type and content_type in rdf_mimtetypes: + elif content_type and is_rdf_mimetype(content_type): aggregation[proxy_key]["confused RDF mimetype"][format] += 1 else: aggregation[proxy_key]["no RDF mimetype"][format] += 1 From 0fa85e86de4633bf6cdf72bea09229e39d9c7237 Mon Sep 17 00:00:00 2001 From: "jj-author@users.noreply.github.com" Date: Wed, 18 Dec 2024 02:39:05 +0100 Subject: [PATCH 30/31] slim down large parsing messages. --- experiments/transform_json.py | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/experiments/transform_json.py b/experiments/transform_json.py index 7c42666..706369e 100644 --- a/experiments/transform_json.py +++ b/experiments/transform_json.py @@ -18,13 +18,17 @@ def transform_json(input_file_path, output_file_path): download["error"]["chain_details"] = "\n".join( f"{item['type']}: {item['message']}" for item in chain_details ) + if "rapper_error" in download and download["rapper_error"]: + rapper_error_lines = download["rapper_error"].splitlines() + if len(rapper_error_lines) > 11: + download["rapper_error"] = "\n".join(rapper_error_lines[:6] + ["..."] + rapper_error_lines[-5:]) with open(output_file_path, "w") as file: json.dump(data, file, indent=4) def main(): - input_json_file = "downloads/download_log.json" - output_json_file = "downloads/download_log_flattened.json" + input_json_file = "downloads-200ms-shuffled/download_log_extended.json" + output_json_file = "downloads-200ms-shuffled/download_log_extended_flattened.json" transform_json(input_json_file, output_json_file) print(f"Transformation complete. File saved to {output_json_file}") From 7b962b708f359117884c8228a377ad26ed193c3c Mon Sep 17 00:00:00 2001 From: "jj-author@users.noreply.github.com" Date: Fri, 20 Dec 2024 16:14:30 +0100 Subject: [PATCH 31/31] added missing changes of experiment state --- experiments/aggregate_results.py | 43 ++++- experiments/aggregate_results_NIRcheck.py | 187 ++++++++++++++++++++++ experiments/download_ontologies.py | 22 ++- experiments/parse_ontologies.py | 36 +++-- 4 files changed, 259 insertions(+), 29 deletions(-) create mode 100644 experiments/aggregate_results_NIRcheck.py diff --git a/experiments/aggregate_results.py b/experiments/aggregate_results.py index fd2aeba..88e7763 100644 --- a/experiments/aggregate_results.py +++ b/experiments/aggregate_results.py @@ -1,5 +1,6 @@ import json from collections import defaultdict +import csv # Content type mapping for each format content_type_mapping = { @@ -8,11 +9,18 @@ "rdfxml": ["application/rdf+xml", "application/xml"], # Updated to include multiple accepted types } -rdf_mimtetypes = ['text/turtle', 'application/n-triples', 'application/rdf+xml', 'application/xml'] +# rdf_mimtetypes = ['text/turtle', 'application/n-triples', 'application/rdf+xml', 'application/xml'] +rdf_mimtetypes = [ + 'text/turtle', 'application/n-triples', 'application/rdf+xml', 'application/xml', + 'application/owl+xml', 'application/ld+json', 'text/owl-functional', 'text/owl-manchester', + 'text/n3', 'application/trig', 'application/x-turtle', 'application/x-trig', + 'application/x-nquads' , 'application/n-quads' +] + # File paths for the logs -no_proxy_file_path = 'downloads-200ms-shuffled/download_log_extended.json' -proxy_file_path = 'downloads_proxy_requests/download_proxy_log_extended.json' +no_proxy_file_path = 'downloads-200ms-shuffled/download_log_extended_fixshort.json' +proxy_file_path = 'downloads_proxy_requests/download_proxy_log_extended_fix.json' # Load the JSON data for no-proxy and with-proxy scenarios with open(no_proxy_file_path, 'r') as f: @@ -39,8 +47,9 @@ "0 bytes content", "no rdf content (0 triples parsable)", "partially parsable rdf-content", + # "pp describes requested ont.", "fully parsable rdf-content", - "describes requested ont.", + # "describes requested ont.", "no RDF mimetype", "confused RDF mimetype", "correct mimetype", @@ -121,12 +130,12 @@ def process_data(data, proxy_key): aggregation[proxy_key]["no rdf content (0 triples parsable)"][format] += 1 elif parsed_triples > 0 and rapper_error: aggregation[proxy_key]["partially parsable rdf-content"][format] += 1 - if uri_in_subject_position: - aggregation[proxy_key]["describes requested ont."][format] += 1 + # if uri_in_subject_position: + # aggregation[proxy_key]["pp describes requested ont."][format] += 1 elif parsed_triples > 0 and not rapper_error: aggregation[proxy_key]["fully parsable rdf-content"][format] += 1 - if uri_in_subject_position: - aggregation[proxy_key]["describes requested ont."][format] += 1 + if True: + # aggregation[proxy_key]["describes requested ont."][format] += 1 # Check MIME types only for ontologies that describe the requested ontology if content_type and is_correct_mimetype(format, content_type): @@ -141,10 +150,28 @@ def process_data(data, proxy_key): if formats_correct == {"ttl", "nt", "rdfxml"}: aggregation[proxy_key]["correct for all 3 formats"]["all"] += 1 +# Function to write aggregation results to TSV file +def write_to_tsv(filename, proxy_key): + with open(filename, 'w', newline='') as tsvfile: + writer = csv.writer(tsvfile, delimiter='\t') + writer.writerow(["Accessibility Status", "turtle", "ntriples", "rdfxml"]) + for category in categories: + row = [category] + for format in ["ttl", "nt", "rdfxml"]: + row.append(aggregation[proxy_key][category].get(format, 0)) + writer.writerow(row) + # Write total for "correct for all 3 formats" + correct_all = aggregation[proxy_key]["correct for all 3 formats"]["all"] + writer.writerow(["correct for all 3 formats", correct_all]) + # Process both datasets process_data(no_proxy_data, "w/o proxy") process_data(proxy_data, "with proxy") +# Write results to TSV files +write_to_tsv('no_proxy_results.tsv', "w/o proxy") +write_to_tsv('proxy_results.tsv', "with proxy") + # Print the table table_headers = ["Accessibility Status", "turtle", "ntriples", "rdfxml"] for proxy_key in ["w/o proxy", "with proxy"]: diff --git a/experiments/aggregate_results_NIRcheck.py b/experiments/aggregate_results_NIRcheck.py new file mode 100644 index 0000000..8dcd035 --- /dev/null +++ b/experiments/aggregate_results_NIRcheck.py @@ -0,0 +1,187 @@ +import json +from collections import defaultdict +import csv + +# Content type mapping for each format +content_type_mapping = { + "ttl": "text/turtle", + "nt": "application/n-triples", + "rdfxml": ["application/rdf+xml", "application/xml"], # Updated to include multiple accepted types +} + +# rdf_mimtetypes = ['text/turtle', 'application/n-triples', 'application/rdf+xml', 'application/xml'] +rdf_mimtetypes = [ + 'text/turtle', 'application/n-triples', 'application/rdf+xml', 'application/xml', + 'application/owl+xml', 'application/ld+json', 'text/owl-functional', 'text/owl-manchester', + 'text/n3', 'application/trig', 'application/x-turtle', 'application/x-trig', + 'application/x-nquads' , 'application/n-quads' +] + + +# File paths for the logs +no_proxy_file_path = 'downloads-200ms-shuffled/download_log_extended_fixshort.json' +proxy_file_path = 'downloads_proxy_requests/download_proxy_log_extended_fix.json' + +# Load the JSON data for no-proxy and with-proxy scenarios +with open(no_proxy_file_path, 'r') as f: + no_proxy_data = json.load(f) + +with open(proxy_file_path, 'r') as f: + proxy_data = json.load(f) + +# Initialize the aggregation dictionary for both proxy and no-proxy scenarios +aggregation = { + "w/o proxy": defaultdict(lambda: defaultdict(int)), + "with proxy": defaultdict(lambda: defaultdict(int)), +} + +# Define categories for table +categories = [ + "unsuccessful payload retrieval", + "DNS issue", + "Con. / transport issue", + "TLS cert issue", + "Too many redirects", + "Non-200 HTTP code", + "Successful request (code 200)", + "0 bytes content", + "no rdf content (0 triples parsable)", + "partially parsable rdf-content", + "pp describes requested ont.", + "fully parsable rdf-content", + "describes requested ont.", + "no RDF mimetype", + "confused RDF mimetype", + "correct mimetype", + "correct for all 3 formats", +] + +# Error type to category mapping logic +def map_error_to_category(error_type, type_more_specific): + if error_type == "TooManyRedirects": + return "Too many redirects" + elif error_type == "SSLError": + return "TLS cert issue" + elif error_type == "ConnectionError": + if type_more_specific == "NameResolutionError": + return "DNS issue" + else: + return "Con. / transport issue" + elif error_type == "ConnectTimeout": + return "Con. / transport issue" + else: + return "Con. / transport issue" + +# Check if MIME type is valid for the format +def is_correct_mimetype(format, content_type): + expected_types = content_type_mapping.get(format, []) + if isinstance(expected_types, list): + for expected_type in expected_types: + if expected_type in content_type: + return True + return False + return expected_types in content_type + +def is_rdf_mimetype(content_type): + for rdf_mimetype in rdf_mimtetypes: + if rdf_mimetype in content_type: + return True + return False + +# Process data for aggregation +def process_data(data, proxy_key): + for entry in data: + url = entry.get("url", "") + downloads = entry.get("downloads", {}) + formats_correct = set() + + for format, details in downloads.items(): + # Extract details + status_code = details.get("status_code") + parsed_triples = details.get("parsed_triples", 0) + content_length = details.get("content_lenght_measured", 0) + content_type = details.get("content_type", "").lower() if details.get("content_type") else None + uri_in_subject_position = details.get("uri_in_subject_position", False) + rapper_error = details.get("rapper_error") + error = details.get("error", {}) + + # Check for errors and categorize them + if error and error.get("type"): + error_type = error["type"] + type_more_specific = error.get("type_more_specific") + category = map_error_to_category(error_type, type_more_specific) + aggregation[proxy_key][category][format] += 1 + aggregation[proxy_key]["unsuccessful payload retrieval"][format] += 1 + continue + + # Handle non-200 status codes + if status_code != 200: + aggregation[proxy_key]["Non-200 HTTP code"][format] += 1 + aggregation[proxy_key]["unsuccessful payload retrieval"][format] += 1 + continue + + # Successful request (status code 200) + aggregation[proxy_key]["Successful request (code 200)"][format] += 1 + + # Categorize successful ontologies + if content_length == 0: + aggregation[proxy_key]["0 bytes content"][format] += 1 + elif parsed_triples == 0: + aggregation[proxy_key]["no rdf content (0 triples parsable)"][format] += 1 + elif parsed_triples > 0 and rapper_error: + aggregation[proxy_key]["partially parsable rdf-content"][format] += 1 + if uri_in_subject_position: + aggregation[proxy_key]["pp describes requested ont."][format] += 1 + elif parsed_triples > 0 and not rapper_error: + aggregation[proxy_key]["fully parsable rdf-content"][format] += 1 + if uri_in_subject_position: + aggregation[proxy_key]["describes requested ont."][format] += 1 + + # Check MIME types only for ontologies that describe the requested ontology + if content_type and is_correct_mimetype(format, content_type): + aggregation[proxy_key]["correct mimetype"][format] += 1 + formats_correct.add(format) + elif content_type and is_rdf_mimetype(content_type): + aggregation[proxy_key]["confused RDF mimetype"][format] += 1 + else: + aggregation[proxy_key]["no RDF mimetype"][format] += 1 + + # Check if ontology is correct for all 3 formats + if formats_correct == {"ttl", "nt", "rdfxml"}: + aggregation[proxy_key]["correct for all 3 formats"]["all"] += 1 + +# Function to write aggregation results to TSV file +def write_to_tsv(filename, proxy_key): + with open(filename, 'w', newline='') as tsvfile: + writer = csv.writer(tsvfile, delimiter='\t') + writer.writerow(["Accessibility Status", "turtle", "ntriples", "rdfxml"]) + for category in categories: + row = [category] + for format in ["ttl", "nt", "rdfxml"]: + row.append(aggregation[proxy_key][category].get(format, 0)) + writer.writerow(row) + # Write total for "correct for all 3 formats" + correct_all = aggregation[proxy_key]["correct for all 3 formats"]["all"] + writer.writerow(["correct for all 3 formats", correct_all]) + +# Process both datasets +process_data(no_proxy_data, "w/o proxy") +process_data(proxy_data, "with proxy") + +# Write results to TSV files +write_to_tsv('no_proxy_results.tsv', "w/o proxy") +write_to_tsv('proxy_results.tsv', "with proxy") + +# Print the table +table_headers = ["Accessibility Status", "turtle", "ntriples", "rdfxml"] +for proxy_key in ["w/o proxy", "with proxy"]: + print(f"\nRequested format {proxy_key}") + print(f"{table_headers[0]:<40} {table_headers[1]:<10} {table_headers[2]:<10} {table_headers[3]:<10}") + for category in categories: + row = [category] + for format in ["ttl", "nt", "rdfxml"]: + row.append(aggregation[proxy_key][category].get(format, 0)) + print(f"{row[0]:<40} {row[1]:<10} {row[2]:<10} {row[3]:<10}") + # Print total for "correct for all 3 formats" + correct_all = aggregation[proxy_key]["correct for all 3 formats"]["all"] + print(f"{'correct for all 3 formats':<40} {correct_all:<10}") diff --git a/experiments/download_ontologies.py b/experiments/download_ontologies.py index 032bdda..34190f9 100644 --- a/experiments/download_ontologies.py +++ b/experiments/download_ontologies.py @@ -58,18 +58,26 @@ def download_ontology(url, formats, base_folder): headers = { "Accept": "", } - - session = requests.Session() - session.max_redirects = 10 - retries = Retry(total=0, backoff_factor=1, status_forcelist=[427]) # wanted to use for 429 originally, but backoff is als applied to connection timeouts and such - session.mount('http://', HTTPAdapter(max_retries=retries)) - session.mount('https://', HTTPAdapter(max_retries=retries)) + + proxies = { + "http": f"http://localhost:8898", + "https": f"http://localhost:8898", + } + + cacert_path = "ca-cert.pem" + + # session = requests.Session() + # session.max_redirects = 10 + # retries = Retry(total=0, backoff_factor=1, status_forcelist=[427]) # wanted to use for 429 originally, but backoff is als applied to connection timeouts and such + # session.mount('http://', HTTPAdapter(max_retries=retries)) + # session.mount('https://', HTTPAdapter(max_retries=retries)) for format_name, mime_type in formats.items(): try: headers["Accept"] = mime_type start_time = time.time() - response = session.get(url, headers=headers, timeout=10) + #response = session.get(url, proxies=proxies, headers=headers, verify=cacert_path, timeout=10) + response = requests.get(url, headers=headers, timeout=10) request_duration = time.time() - start_time file_path = "" diff --git a/experiments/parse_ontologies.py b/experiments/parse_ontologies.py index 0c53144..d101633 100644 --- a/experiments/parse_ontologies.py +++ b/experiments/parse_ontologies.py @@ -17,10 +17,19 @@ def is_uri_in_subject(triples, ontology_uri): subject_pattern = re.compile(rf"^<{re.escape(ontology_uri)}>") return any(subject_pattern.match(triple) for triple in triples) + def format_error_message(error_message): + lines = error_message.splitlines() + if len(lines) > 20: + return "\n".join(lines[:10] + ["\n\n\n............\n\n\n"] + lines[-10:]) + return error_message + # Load the JSON file with open(json_file_path, 'r') as f: ontologies = json.load(f) + base_folder = os.path.dirname(json_file_path) + input_base_folder = os.path.basename(base_folder) + for ontology in ontologies: ontology_url = ontology["url"] print(f'URL: {ontology_url}') @@ -33,7 +42,9 @@ def is_uri_in_subject(triples, ontology_uri): format_data["uri_in_subject_position"] = None format_data["rapper_error"] = None elif file_path and status_code == 200: - file_path = file_path.replace('downloads_proxy-test', 'downloads_proxy-fixedCA') + file_path_parts = file_path.split(os.sep) + file_path_parts[0] = input_base_folder + file_path = os.sep.join(file_path_parts) # Prepare the command command = [ "cat", @@ -56,22 +67,19 @@ def is_uri_in_subject(triples, ontology_uri): text=True ) + # Check the result and update the JSON + output = result.stdout + triples = output.splitlines() + num_triples = output.count("\n") + uri_in_subject = is_uri_in_subject(triples, ontology_url) + format_data["uri_in_subject_position"] = uri_in_subject + format_data["parsed_triples"] = num_triples - # Check the result and update the JSON if result.returncode == 0: - output = result.stdout - triples = output.splitlines() - num_triples = output.count("\n") - - uri_in_subject = is_uri_in_subject(triples, ontology_url) - format_data["uri_in_subject_position"] = uri_in_subject - format_data["parsed_triples"] = num_triples format_data["rapper_error"] = None else: - format_data["parsed_triples"] = 0 - format_data["uri_in_subject_position"] = False - format_data["rapper_error"] = result.stderr.strip() + format_data["rapper_error"] = format_error_message(result.stderr.strip()) except Exception as e: format_data["parsed_triples"] = 0 @@ -84,8 +92,8 @@ def is_uri_in_subject(triples, ontology_uri): if __name__ == "__main__": # Replace these paths with your actual file paths - input_json_path = "downloads_proxy-fixedCA/download_nt_proxy_log.json" - output_json_path = "downloads_proxy-fixedCA/download_nt_proxy_log_extended.json" + input_json_path = "downloads_direct_requests/download_log.json" + output_json_path = "downloads_direct_requests/download_log_fixshort.json" if os.path.exists(input_json_path): process_ontologies(input_json_path, output_json_path)