-
generateTestTable()
creates an Excel file with sheets that correspond to OMOP-CDM tables. -
patientsCDM()
now acceptscdmName
as argument to allow for custom cdm name. -
getEmptyCDM()
returns an empty cdm object.
- Fixed bug related to empty tables pushed to the duckdb CDM.
-
readPatients()
now has a parameter to select either Excel or CSV files as an input. -
readPatients.xl()
andreadPatients.csv
are also exported functions for convenience. -
graphCohort()
provides a visualisation of cohort timelines. -
JSONS are saved in the testthat/testCases folder as default for better test self-containment.
-
Tested with MIMIC database.
- Using omopgenerics for checking Excel data.
- Updated DESCRIPTION.
- Updated examples.
- Updated messages in functions.
- Updated documentation and vignette explaining sample data.
- Initial CRAN submission.
- Tests passed and finishes documentation.