need for logLik for family=Poisson

[arives]

For bayes = F, family=Poisson doesn't produce logLik, although family=binomial does. I thought the code was there for the logLik, but I might need to write it.

[daijiang]

Tony, I think family=Poisson already has logLik in the output.
Get it with model$logLik

[arives]

Daijiang, I thought so too, but it doesn't, at least not for a dataset I was working on. Also, family=binomial for binary data gave a logLik but not for binomial data. From: Daijiang Li ***@***.***> Reply-To: daijiang/phyr ***@***.***> Date: Saturday, January 29, 2022 at 9:25 PM To: daijiang/phyr ***@***.***> Cc: "Anthony R. Ives" ***@***.***>, Author ***@***.***> Subject: Re: [daijiang/phyr] need for logLik for family=Poisson (Issue #70) Tony, I think family=Poisson already has logLik in the output. Get it with model$logLik — Reply to this email directly, view it on GitHub<#70 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ACYX6LEFORW2EMGDY5ZYQC3UYSVRNANCNFSM5NDFDRUA>. Triage notifications on the go with GitHub Mobile for iOS<https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android<https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>. You are receiving this because you authored the thread.Message ID: ***@***.***>

[daijiang]

Tony,
Here are the lines of code for that: https://github.com/daijiang/phyr/blob/master/R/pglmm.R#L936-L954
I think it is included there? No idea why you did not have that.
If you can send me an example, I may be able to look at it.