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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(aggregate_fusion_calls)
export(annoFuse_single_sample)
export(annotate_fusion_calls)
export(called_by_n_callers)
export(expression_filter_fusion)
export(fusion_driver)
export(fusion_filtering_QC)
export(fusion_multifused)
export(fusion_standardization)
export(get_Pfam_domain)
export(groupcount_fusion_calls)
export(plot_breakpoints)
export(plot_recurrent_fusions)
export(plot_recurrent_genes)
export(plot_summary)
export(read_arriba_calls)
export(read_starfusion_calls)
export(reportFuse)
export(samplecount_fusion_calls)
export(shape_output)
export(shinyFuse)
export(theme_publication)
export(zscored_annotation)
import(annoFuseData)
import(rintrojs)
import(shiny, except = c(renderDataTable, dataTableOutput))
import(shinydashboard)
import(shinythemes)
importFrom(DT,dataTableOutput)
importFrom(DT,datatable)
importFrom(DT,renderDataTable)
importFrom(EnsDb.Hsapiens.v86,EnsDb.Hsapiens.v86)
importFrom(base64enc,dataURI)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange)
importFrom(dplyr,bind_cols)
importFrom(dplyr,case_when)
importFrom(dplyr,count)
importFrom(dplyr,desc)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by)
importFrom(dplyr,inner_join)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,pull)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,ungroup)
importFrom(ensembldb,genes)
importFrom(ggplot2,.data)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_col)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_linerange)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,rel)
importFrom(ggplot2,scale_colour_manual)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_size_continuous)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,stat)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_void)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggpubr,ggarrange)
importFrom(ggpubr,ggexport)
importFrom(ggpubr,rotate)
importFrom(ggthemes,theme_foundation)
importFrom(grid,arrow)
importFrom(grid,unit)
importFrom(methods,is)
importFrom(purrr,is_empty)
importFrom(qdapRegex,rm_between)
importFrom(readr,col_character)
importFrom(readr,cols)
importFrom(readr,read_tsv)
importFrom(reshape2,colsplit)
importFrom(reshape2,dcast)
importFrom(reshape2,melt)
importFrom(rlang,":=")
importFrom(rmarkdown,render)
importFrom(shiny,addResourcePath)
importFrom(shinyBS,bsTooltip)
importFrom(shinycssloaders,withSpinner)
importFrom(stats,na.omit)
importFrom(stringr,str_detect)
importFrom(stringr,str_replace)
importFrom(tibble,add_column)
importFrom(tibble,column_to_rownames)
importFrom(tibble,remove_rownames)
importFrom(tibble,rownames_to_column)
importFrom(tidyr,gather)
importFrom(tidyr,separate)
importFrom(tidyr,unnest)
importFrom(tidyselect,one_of)
importFrom(utils,browseURL)
importFrom(utils,head)
importFrom(utils,read.delim)