diff --git a/doc/tutorials/Overview-of-py4cytoscape.ipynb b/doc/tutorials/Overview-of-py4cytoscape.ipynb index 8feb9b1..5f4265b 100644 --- a/doc/tutorials/Overview-of-py4cytoscape.ipynb +++ b/doc/tutorials/Overview-of-py4cytoscape.ipynb @@ -624,102 +624,15 @@ "style_values | Retrieving current values for visual properties. | *get_node_width
get_edge_color
get_network_zoom*\n", "tables | Managing table columns and table column functions, like map and rename, as well as loading and extracting table data in Cytoscape. | *get_table_columns
rename_table_column
load_table_data
map_table_column*\n", "tools | Performing actions found in the Tools Menu in Cytoscape. | *cybrowser_dialog
diffusion_basic*\n", - "user_interface | Controling the panels in the Cytoscape user interface. | *hide_panel
float_panel
dock_panel*\n", - "\n", - "Open swagger docs for live instances of CyREST API and Commands API:\n", - "\n" - ] - }, - { - "cell_type": "code", - "metadata": { - "id": "uq9Hc2VplUyp" - }, - "source": [ - "p4c.cyrest_api()" - ], - "execution_count": null, - "outputs": [] - }, - { - "cell_type": "code", - "metadata": { - "id": "O1IQY3KT8Kna" - }, - "source": [ - "p4c.commands_api()" - ], - "execution_count": null, - "outputs": [] - }, - { - "cell_type": "markdown", - "metadata": { - "id": "XBRPTtJ68lXN" - }, - "source": [ - "List available commands and arguments in Python. Use “help” to list top level:" - ] - }, - { - "cell_type": "code", - "metadata": { - "id": "e_5BaI-z8aMW" - }, - "source": [ - "p4c.commands_help(\"help\")" - ], - "execution_count": null, - "outputs": [] - }, - { - "cell_type": "markdown", - "metadata": { - "id": "oQutmKH19qrj" - }, - "source": [ - "List **network** commands. Note that “help” is optional:" - ] - }, - { - "cell_type": "code", - "metadata": { - "id": "CSTgyF_g8s20" - }, - "source": [ - "p4c.commands_help(\"help network\")" - ], - "execution_count": null, - "outputs": [] - }, - { - "cell_type": "markdown", - "metadata": { - "id": "E5aYBbvz91MY" - }, - "source": [ - "List arguments for the **network select** command:" + "user_interface | Controling the panels in the Cytoscape user interface. | *hide_panel
float_panel
dock_panel*\n" ] }, - { - "cell_type": "code", - "metadata": { - "id": "HWEC_n9x9ml8" - }, - "source": [ - "p4c.commands_help(\"help network select\")" - ], - "execution_count": null, - "outputs": [] - }, { "cell_type": "markdown", "metadata": { "id": "sU3GXhKK-AXr" }, "source": [ - "That covers the basics of network manipulation. Check out the other vignettes for additional amd more complex examples. And when you are ready to work with some real data, check out the other basic and advanced R tutorials, https://github.com/cytoscape/cytoscape-automation/tree/master/for-scripters/Python.\n", - "\n", "## More examples\n", "\n", "The Cytoscape team is collecting scripts from the community in a public GitHub repository at https://github.com/cytoscape/cytoscape-automation/tree/master/for-scripters/Python.\n", @@ -756,4 +669,4 @@ "outputs": [] } ] -} \ No newline at end of file +} diff --git a/doc/tutorials/Overview-of-py4cytoscape.rst b/doc/tutorials/Overview-of-py4cytoscape.rst index 91d9aa3..4019087 100644 --- a/doc/tutorials/Overview-of-py4cytoscape.rst +++ b/doc/tutorials/Overview-of-py4cytoscape.rst @@ -431,41 +431,6 @@ py4cytoscape functions | | interface. | dock_panel* | +-----------------------+-----------------------+-----------------------+ -Open swagger docs for live instances of CyREST API and Commands API: - -.. code:: python - - p4c.cyrest_api() - -.. code:: python - - p4c.commands_api() - -List available commands and arguments in Python. Use “help” to list top -level: - -.. code:: python - - p4c.commands_help("help") - -List **network** commands. Note that “help” is optional: - -.. code:: python - - p4c.commands_help("help network") - -List arguments for the **network select** command: - -.. code:: python - - p4c.commands_help("help network select") - -That covers the basics of network manipulation. Check out the other -vignettes for additional amd more complex examples. And when you are -ready to work with some real data, check out the other basic and -advanced R tutorials, -https://github.com/cytoscape/cytoscape-automation/tree/master/for-scripters/Python. - More examples -------------