diff --git a/bin/metafx-modules/feature_analysis.sh b/bin/metafx-modules/feature_analysis.sh index 88078e5..73142d1 100755 --- a/bin/metafx-modules/feature_analysis.sh +++ b/bin/metafx-modules/feature_analysis.sh @@ -119,13 +119,13 @@ fi mkdir ${w} cmd1="python ${SOFT}/select_samples_by_feature.py --work-dir ${featDir} --feature ${featName} --res-dir ${w} " if [[ $relab ]]; then - cmd+="--board ${relab}" + cmd1+="--board ${relab}" fi echo "$cmd1" $cmd1 if [[ $? -eq 0 ]]; then - echo "Total `wc -l ${w}/samples_list_feature_${featName}.txt` samples were selected" + echo "Total `wc -l ${w}/samples_list_feature_${featName}.txt | cut -d" " -f1` samples were selected" echo "List of samples containing feature '${featName}' saved to ${w}/samples_list_feature_${featName}.txt" echo "Nucleotide sequence for feature '${featName}' saved to ${w}/seq_feature_${featName}.fasta" comment "Step 1 finished successfully!" diff --git a/img/examples/bandage_multigraph.png b/img/examples/bandage_multigraph.png new file mode 100644 index 0000000..a648c0f Binary files /dev/null and b/img/examples/bandage_multigraph.png differ