Error testing with example data

[sharvari14]

Hi, I get the following error trying the code on GitHub: Can you please help with this?

> library(linseed)
lo <- LinseedObject$new("GSE19830", samples=10:42, topGenes=10000)
Found 1 file(s)
GSE19830_series_matrix.txt.gz
Error in normalize.quantiles(expressionData) : 
  ERROR; return code from pthread_create() is 22
> session
sessionInfo    sessioninfo::  
> sessionInfo()
R version 4.2.3 (2023-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Debian GNU/Linux 11 (bullseye)

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.13.so

locale:
 [1] LC_CTYPE=C.UTF-8       LC_NUMERIC=C           LC_TIME=C.UTF-8       
 [4] LC_COLLATE=C.UTF-8     LC_MONETARY=C.UTF-8    LC_MESSAGES=C.UTF-8   
 [7] LC_PAPER=C.UTF-8       LC_NAME=C              LC_ADDRESS=C          
[10] LC_TELEPHONE=C         LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C   

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] linseed_0.99.2      Biobase_2.58.0      BiocGenerics_0.44.0

loaded via a namespace (and not attached):
 [1] fs_1.6.1              usethis_2.1.6         devtools_2.4.5       
 [4] doParallel_1.0.17     RColorBrewer_1.1-3    progress_1.2.2       
 [7] rprojroot_2.0.3       tools_4.2.3           profvis_0.3.7        
[10] utf8_1.2.3            R6_2.5.1              colorspace_2.1-0     
[13] urlchecker_1.0.1      withr_2.5.0           tidyselect_1.2.0     
[16] prettyunits_1.1.1     processx_3.8.0        curl_5.0.0           
[19] compiler_4.2.3        preprocessCore_1.60.2 cli_3.6.1            
[22] xml2_1.3.3            desc_1.4.2            scales_1.2.1         
[25] readr_2.1.4           callr_3.7.3           NMF_0.28             
[28] stringr_1.5.0         digest_0.6.31         R.utils_2.12.3       
[31] GEOquery_2.66.0       pkgconfig_2.0.3       htmltools_0.5.5      
[34] sessioninfo_1.2.2     fastmap_1.1.1         limma_3.54.2         
[37] htmlwidgets_1.6.2     rlang_1.1.0           shiny_1.7.4          
[40] generics_0.1.3        combinat_0.0-8        R.oo_1.26.0          
[43] dplyr_1.1.1           magrittr_2.0.3        Matrix_1.5-4         
[46] Rcpp_1.0.10           munsell_0.5.0         fansi_1.0.4          
[49] lifecycle_1.0.3       R.methodsS3_1.8.2     stringi_1.7.12       
[52] pkgbuild_1.4.0        Rtsne_0.16            plyr_1.8.8           
[55] grid_4.2.3            parallel_4.2.3        promises_1.2.0.1     
[58] crayon_1.5.2          miniUI_0.1.1.1        lattice_0.21-8       
[61] hms_1.1.3             ps_1.7.4              pillar_1.9.0         
[64] rngtools_1.5.2        corpcor_1.6.10        reshape2_1.4.4       
[67] codetools_0.2-19      pkgload_1.3.2         glue_1.6.2           
[70] data.table_1.14.8     remotes_2.4.2         BiocManager_1.30.20  
[73] vctrs_0.6.1           tzdb_0.3.0            httpuv_1.6.9         
[76] foreach_1.5.2         gtable_0.3.3          purrr_1.0.1          
[79] tidyr_1.3.0           cachem_1.0.7          ggplot2_3.4.2        
[82] gridBase_0.4-7        mime_0.12             xtable_1.8-4         
[85] later_1.3.0           tibble_3.2.1          iterators_1.0.14     
[88] registry_0.5-1        memoise_2.0.1         cluster_2.1.4        
[91] ellipsis_0.3.2