diff --git a/stimuli b/stimuli index 838f49e2cbd..4f2602503b4 160000 --- a/stimuli +++ b/stimuli @@ -1 +1 @@ -Subproject commit 838f49e2cbd829c69de231ff8def15a7f6798163 +Subproject commit 4f2602503b4d666d8b3aecb1731b572c44f3e2c8 diff --git a/sub-01/ses-001/func/sub-01_ses-001_task-s01e02a_bold.json b/sub-01/ses-001/func/sub-01_ses-001_task-s01e02a_bold.json index a2a1562b029..217c81f18a5 100644 --- a/sub-01/ses-001/func/sub-01_ses-001_task-s01e02a_bold.json +++ b/sub-01/ses-001/func/sub-01_ses-001_task-s01e02a_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "11:27:12.677500", + "AcquisitionTime": "11:00:53.920000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -45,29 +45,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e02a", + "ProtocolName": "func_task-s01e01a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0383981, + "SAR": 0.0384014, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e02a", - "SeriesNumber": 14, + "SeriesDescription": "func_task-s01e01a", + "SeriesNumber": 10, "ShimSetting": [639, -7202, -8827, 719, 124, -21, 1, -22], "SliceThickness": 2, - "SliceTiming": [0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685], + "SliceTiming": [0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 246.432, - "WipMemBlock": "60f8628f-854d-4bd2-9886-7dc40e156a62||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "bf900d47-d7d9-4fc8-8a39-1992f522e2af||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9950048923492432, -0.08396422863006592, 0.11360155045986176, 105.41881561279297], [-0.1187247633934021, 1.8681559562683105, -0.7042001485824585, -62.526145935058594], @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 472], + "dcmmeta_shape": [104, 104, 60, 482], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259145, + "ImagingFrequency": 123.259131, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e02a", + "ProtocolName": "func_task-s01e01a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03839806751426, + "SAR": 0.038401406525, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,9 +135,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e02a", - "SeriesNumber": 14, - "SeriesTime": "112839.184000", + "SeriesDescription": "func_task-s01e01a", + "SeriesNumber": 10, + "SeriesTime": "110159.248000", "SliceLocation": 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a/sub-01/ses-001/func/sub-01_ses-001_task-s01e02a_bold.nii.gz +++ b/sub-01/ses-001/func/sub-01_ses-001_task-s01e02a_bold.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/1X/vV/SHA256E-s507953949--17ec951e4c03673fa03d51474b796e69086a583ec2c247d804ce503e52f8106e.nii.gz/SHA256E-s507953949--17ec951e4c03673fa03d51474b796e69086a583ec2c247d804ce503e52f8106e.nii.gz \ No newline at end of file +../../../.git/annex/objects/Mg/25/SHA256E-s518236862--22bbe4b35ccdb623bed7dd1bc3044891cb4092a41715ecd0e4f052db7b7adc82.nii.gz/SHA256E-s518236862--22bbe4b35ccdb623bed7dd1bc3044891cb4092a41715ecd0e4f052db7b7adc82.nii.gz \ No newline at end of file diff --git a/sub-01/ses-001/func/sub-01_ses-001_task-s01e02a_sbref.json b/sub-01/ses-001/func/sub-01_ses-001_task-s01e02a_sbref.json index b49d9e65532..1d4f56a0463 100644 --- a/sub-01/ses-001/func/sub-01_ses-001_task-s01e02a_sbref.json +++ b/sub-01/ses-001/func/sub-01_ses-001_task-s01e02a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "11:27:2.247500", + "AcquisitionTime": "11:00:43.490000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e02a", + "ProtocolName": "func_task-s01e01a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0383981, + "SAR": 0.0384014, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e02a_SBRef", - "SeriesNumber": 13, + "SeriesDescription": "func_task-s01e01a_SBRef", + "SeriesNumber": 9, "ShimSetting": [639, -7202, -8827, 719, 124, -21, 1, -22], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.45, 2.5475, 2.645, 2.7425, 2.84, 2.94, 3.0375, 3.135, 3.2325, 3.33, 3.43, 3.5275, 3.625, 3.7225, 3.82, 3.9175, 4.0175, 4.115, 4.2125, 4.31, 4.4075, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78], + "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.08, 1.1775, 1.275, 1.3725, 1.47, 1.57, 1.6675, 1.765, 1.8625, 1.96, 2.06, 2.1575, 2.255, 2.3525, 2.45, 2.55, 2.6475, 2.745, 2.8425, 2.94, 3.04, 3.1375, 3.235, 3.3325, 3.43, 3.53, 3.6275, 3.725, 3.8225, 3.92, 4.02, 4.1175, 4.215, 4.3125, 4.41, 4.51, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 246.432, - "WipMemBlock": "60f8628f-854d-4bd2-9886-7dc40e156a62||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "bf900d47-d7d9-4fc8-8a39-1992f522e2af||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9950048923492432, -0.08396422863006592, 0.11360155045986176, 105.41881561279297], [-0.1187247633934021, 1.8681559562683105, -0.7042001485824585, -62.526145935058594], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "112702.247500", + "AcquisitionTime": "110043.490000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "112839.155000", + "ContentTime": "110159.226000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259145, + "ImagingFrequency": 123.259131, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "112839.155000", + "InstanceCreationTime": "110159.226000", "InstanceNumber": 1, - "LargestImagePixelValue": 57111, + "LargestImagePixelValue": 59821, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e02a", + "ProtocolName": "func_task-s01e01a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03839806751426, + "SAR": 0.038401406525, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e02a_SBRef", - "SeriesNumber": 13, - "SeriesTime": "112839.152000", + "SeriesDescription": "func_task-s01e01a_SBRef", + "SeriesNumber": 9, + "SeriesTime": "110159.223000", "SliceLocation": -34.499927506096, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "102747.562000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12218.0, + "WindowCenter": 12402.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 25998.0, + "WindowWidth": 26499.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-01/ses-001/func/sub-01_ses-001_task-s01e02a_sbref.nii.gz b/sub-01/ses-001/func/sub-01_ses-001_task-s01e02a_sbref.nii.gz index e8ccc69243d..90f4b5df44b 120000 --- a/sub-01/ses-001/func/sub-01_ses-001_task-s01e02a_sbref.nii.gz +++ b/sub-01/ses-001/func/sub-01_ses-001_task-s01e02a_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/F6/5Z/SHA256E-s1103241--9ca6504d3f97862ca6d76b8c337e48cdc02e66855b09ca301bf8f0845929d93c.nii.gz/SHA256E-s1103241--9ca6504d3f97862ca6d76b8c337e48cdc02e66855b09ca301bf8f0845929d93c.nii.gz \ No newline at end of file +../../../.git/annex/objects/ZQ/6g/SHA256E-s1102565--24451eb366f8441752c905f5b891fe8776b4bdaff57df90fc3d7bedfff0a3a4c.nii.gz/SHA256E-s1102565--24451eb366f8441752c905f5b891fe8776b4bdaff57df90fc3d7bedfff0a3a4c.nii.gz \ No newline at end of file diff --git a/sub-01/ses-001/func/sub-01_ses-001_task-s01e02b_bold.json b/sub-01/ses-001/func/sub-01_ses-001_task-s01e02b_bold.json index 0da492c6beb..a948227c0e0 100644 --- a/sub-01/ses-001/func/sub-01_ses-001_task-s01e02b_bold.json +++ b/sub-01/ses-001/func/sub-01_ses-001_task-s01e02b_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "11:39:30.855000", + "AcquisitionTime": "11:14:10.520000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -45,29 +45,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e02b", + "ProtocolName": "func_task-s01e01b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0383981, + "SAR": 0.0384014, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e02b", - "SeriesNumber": 16, + "SeriesDescription": "func_task-s01e01b", + "SeriesNumber": 12, "ShimSetting": [639, -7202, -8827, 719, 124, -21, 1, -22], "SliceThickness": 2, - "SliceTiming": [0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875], + "SliceTiming": [0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 246.432, - "WipMemBlock": "e548b985-4114-4fe4-8b9e-64ec5d532c2e||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "b76d64f2-3cdf-4bf0-b5d9-11377e29a785||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9950048923492432, -0.08396422863006592, 0.11360155045986176, 105.41881561279297], [-0.1187247633934021, 1.8681559562683105, -0.7042001485824585, -62.526145935058594], @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 472], + "dcmmeta_shape": [104, 104, 60, 482], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259151, + "ImagingFrequency": 123.259141, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e02b", + "ProtocolName": "func_task-s01e01b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03839806751426, + "SAR": 0.038401406525, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,9 +135,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e02b", - "SeriesNumber": 16, - "SeriesTime": "114059.252000", + "SeriesDescription": "func_task-s01e01b", + "SeriesNumber": 12, + "SeriesTime": "111539.330000", "SliceLocation": -34.499927506096, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -154,14 +154,14 @@ }, "time": { "samples": { - "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 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-../../../.git/annex/objects/QF/Qm/SHA256E-s508036190--de80ec18f11b400c272f1730cfdf0d8af56faf55d802537fab9a1a9541676af8.nii.gz/SHA256E-s508036190--de80ec18f11b400c272f1730cfdf0d8af56faf55d802537fab9a1a9541676af8.nii.gz \ No newline at end of file +../../../.git/annex/objects/pm/9F/SHA256E-s518428527--cb74469908a490ad562eb820885006f2d1df88af8a7cf72702db921f9897436a.nii.gz/SHA256E-s518428527--cb74469908a490ad562eb820885006f2d1df88af8a7cf72702db921f9897436a.nii.gz \ No newline at end of file diff --git a/sub-01/ses-001/func/sub-01_ses-001_task-s01e02b_sbref.json b/sub-01/ses-001/func/sub-01_ses-001_task-s01e02b_sbref.json index cfdc2824584..fc95c0d26dd 100644 --- a/sub-01/ses-001/func/sub-01_ses-001_task-s01e02b_sbref.json +++ b/sub-01/ses-001/func/sub-01_ses-001_task-s01e02b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "11:39:20.425000", + "AcquisitionTime": "11:14:0.090000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e02b", + "ProtocolName": "func_task-s01e01b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0383981, + "SAR": 0.0384014, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e02b_SBRef", - "SeriesNumber": 15, + "SeriesDescription": "func_task-s01e01b_SBRef", + "SeriesNumber": 11, "ShimSetting": [639, -7202, -8827, 719, 124, -21, 1, -22], "SliceThickness": 2, - "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825], + "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.08, 1.1775, 1.275, 1.3725, 1.47, 1.57, 1.6675, 1.765, 1.8625, 1.96, 2.06, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 246.432, - "WipMemBlock": "e548b985-4114-4fe4-8b9e-64ec5d532c2e||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "b76d64f2-3cdf-4bf0-b5d9-11377e29a785||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9950048923492432, -0.08396422863006592, 0.11360155045986176, 105.41881561279297], [-0.1187247633934021, 1.8681559562683105, -0.7042001485824585, -62.526145935058594], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "113920.425000", + "AcquisitionTime": "111400.090000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "114059.225000", + "ContentTime": "111539.296000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259151, + "ImagingFrequency": 123.259141, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "114059.225000", + "InstanceCreationTime": "111539.296000", "InstanceNumber": 1, - "LargestImagePixelValue": 58222, + "LargestImagePixelValue": 59540, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e02b", + "ProtocolName": "func_task-s01e01b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03839806751426, + "SAR": 0.038401406525, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e02b_SBRef", - "SeriesNumber": 15, - "SeriesTime": "114059.222000", + "SeriesDescription": "func_task-s01e01b_SBRef", + "SeriesNumber": 11, + "SeriesTime": "111539.293000", "SliceLocation": -34.499927506096, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "102747.562000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12248.0, + "WindowCenter": 12315.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 26056.0, + "WindowWidth": 26248.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-01/ses-001/func/sub-01_ses-001_task-s01e02b_sbref.nii.gz b/sub-01/ses-001/func/sub-01_ses-001_task-s01e02b_sbref.nii.gz index 58c06afbb5d..e6b3af6d569 120000 --- a/sub-01/ses-001/func/sub-01_ses-001_task-s01e02b_sbref.nii.gz +++ b/sub-01/ses-001/func/sub-01_ses-001_task-s01e02b_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/6W/Mv/SHA256E-s1103628--2880a3438fc3bc4d8fd21db6c2f7929351ef32efcbfa581cdb106bc11c81c63b.nii.gz/SHA256E-s1103628--2880a3438fc3bc4d8fd21db6c2f7929351ef32efcbfa581cdb106bc11c81c63b.nii.gz \ No newline at end of file +../../../.git/annex/objects/XF/7Q/SHA256E-s1102889--cf64c02d283808d4a026407d09d03de6b71003cb5a610fdeea8a95d4139823d7.nii.gz/SHA256E-s1102889--cf64c02d283808d4a026407d09d03de6b71003cb5a610fdeea8a95d4139823d7.nii.gz \ No newline at end of file diff --git a/sub-01/ses-001/func/sub-01_ses-001_task-s01e03a_bold.json b/sub-01/ses-001/func/sub-01_ses-001_task-s01e03a_bold.json new file mode 100644 index 00000000000..a2a1562b029 --- /dev/null +++ b/sub-01/ses-001/func/sub-01_ses-001_task-s01e03a_bold.json @@ -0,0 +1,168 @@ +{ + "AcquisitionMatrixPE": 104, + "AcquisitionNumber": 1, + "AcquisitionTime": "11:27:12.677500", + "BandwidthPerPixelPhaseEncode": 17.17, + "BaseResolution": 104, + "BodyPartExamined": "BRAIN", + "CoilString": "HC1-7;NC1_2", + "ConsistencyInfo": "N4_VE11C_LATEST_20160120", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", + "DerivedVendorReportedEchoSpacing": 0.000560011, + "DeviceSerialNumber": "167006", + "DwellTime": 2.1e-06, + "EchoTime": 0.037, + "EchoTrainLength": 104, + "EffectiveEchoSpacing": 0.000560011, + "FlipAngle": 52, + "ImageComments": "Unaliased_MB4_PE3_LB", + "ImageOrientationPatientDICOM": [0.997502, 0.0593624, 0.0382744, -0.0419821, 0.934078, -0.354593], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagingFrequency": 123.259, + "InPlanePhaseEncodingDirectionDICOM": "COL", + "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", + "InstitutionName": "IUGM", + "InstitutionalDepartmentName": "Department", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma_fit", + "Modality": "MR", + "MultibandAccelerationFactor": 4, + "PartialFourier": 1, + "PatientPosition": "HFS", + "PercentPhaseFOV": 100, + "PhaseEncodingDirection": "j", + "PhaseEncodingSteps": 104, + "PhaseResolution": 1, + "PixelBandwidth": 2290, + "ProcedureStepDescription": "video_friends", + "ProtocolName": "func_task-s01e02a", + "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", + "ReceiveCoilActiveElements": "HC1-7;NC1,2", + "ReceiveCoilName": "HeadNeck_64", + "ReconMatrixPE": 104, + "RepetitionTime": 1.49, + "SAR": 0.0383981, + "ScanOptions": "FS", + "ScanningSequence": "EP", + "SequenceName": "epfid2d1_104", + "SequenceVariant": "SK_SS", + "SeriesDescription": "func_task-s01e02a", + "SeriesNumber": 14, + "ShimSetting": [639, -7202, -8827, 719, 124, -21, 1, -22], + "SliceThickness": 2, + "SliceTiming": [0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685], + "SoftwareVersions": "syngo_MR_E11", + "SpacingBetweenSlices": 2, + "StationName": "MRC35049", + "TaskName": "friends", + "TotalReadoutTime": 0.0576811, + "TxRefAmp": 246.432, + "WipMemBlock": "60f8628f-854d-4bd2-9886-7dc40e156a62||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "dcmmeta_affine": [ + [-1.9950048923492432, 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"ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagedNucleus": "1H", + "ImagingFrequency": 123.259145, + "InPlanePhaseEncodingDirection": "COL", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3.0, + "Manufacturer": "SIEMENS", + "ManufacturerModelName": "Prisma_fit", + "Modality": "MR", + "NumberOfAverages": 1.0, + "NumberOfPhaseEncodingSteps": 104, + "PercentPhaseFieldOfView": 100.0, + "PercentSampling": 100.0, + "PerformedProcedureStepStartTime": "102747.635000", + "PhotometricInterpretation": "MONOCHROME2", + "PixelBandwidth": 2290.0, + "PixelRepresentation": 0, + "PixelSpacing": [2.0, 2.0], + "ProtocolName": "func_task-s01e02a", + "RepetitionTime": 1490.0, + "Rows": 832, + "SAR": 0.03839806751426, + "SamplesPerPixel": 1, + "ScanOptions": "FS", + "ScanningSequence": "EP", + "SequenceName": "epfid2d1_104", + "SequenceVariant": [ + "SK", + "SS" +], + "SeriesDescription": "func_task-s01e02a", + "SeriesNumber": 14, + "SeriesTime": 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21838.0, 21803.0, 21797.0, 21753.0, 21771.0, 21806.0, 21802.0, 21812.0, 21784.0, 21763.0, 21732.0, 21757.0, 21837.0, 21800.0, 21774.0, 21804.0, 21805.0, 21781.0, 21814.0, 21810.0, 21782.0, 21740.0, 21684.0, 21711.0, 21746.0, 21749.0, 21788.0, 21813.0, 21788.0, 21778.0, 21788.0, 21788.0, 21797.0, 21796.0, 21773.0, 21766.0, 21790.0, 21786.0, 21827.0, 21898.0] + }, + "slices": {} + } +} \ No newline at end of file diff --git a/sub-01/ses-001/func/sub-01_ses-001_task-s01e03a_bold.nii.gz b/sub-01/ses-001/func/sub-01_ses-001_task-s01e03a_bold.nii.gz new file mode 120000 index 00000000000..7fc8acf7f3d --- /dev/null +++ b/sub-01/ses-001/func/sub-01_ses-001_task-s01e03a_bold.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/1X/vV/SHA256E-s507953949--17ec951e4c03673fa03d51474b796e69086a583ec2c247d804ce503e52f8106e.nii.gz/SHA256E-s507953949--17ec951e4c03673fa03d51474b796e69086a583ec2c247d804ce503e52f8106e.nii.gz \ No newline at end of file diff --git a/sub-01/ses-001/func/sub-01_ses-001_task-s01e06a_sbref.json b/sub-01/ses-001/func/sub-01_ses-001_task-s01e03a_sbref.json similarity index 80% rename from sub-01/ses-001/func/sub-01_ses-001_task-s01e06a_sbref.json rename to sub-01/ses-001/func/sub-01_ses-001_task-s01e03a_sbref.json index 1d4f56a0463..b49d9e65532 100644 --- a/sub-01/ses-001/func/sub-01_ses-001_task-s01e06a_sbref.json +++ b/sub-01/ses-001/func/sub-01_ses-001_task-s01e03a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "11:00:43.490000", + "AcquisitionTime": "11:27:2.247500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e01a", + "ProtocolName": "func_task-s01e02a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0384014, + "SAR": 0.0383981, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e01a_SBRef", - "SeriesNumber": 9, + "SeriesDescription": "func_task-s01e02a_SBRef", + "SeriesNumber": 13, "ShimSetting": [639, -7202, -8827, 719, 124, -21, 1, -22], "SliceThickness": 2, - "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.08, 1.1775, 1.275, 1.3725, 1.47, 1.57, 1.6675, 1.765, 1.8625, 1.96, 2.06, 2.1575, 2.255, 2.3525, 2.45, 2.55, 2.6475, 2.745, 2.8425, 2.94, 3.04, 3.1375, 3.235, 3.3325, 3.43, 3.53, 3.6275, 3.725, 3.8225, 3.92, 4.02, 4.1175, 4.215, 4.3125, 4.41, 4.51, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825], + "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.45, 2.5475, 2.645, 2.7425, 2.84, 2.94, 3.0375, 3.135, 3.2325, 3.33, 3.43, 3.5275, 3.625, 3.7225, 3.82, 3.9175, 4.0175, 4.115, 4.2125, 4.31, 4.4075, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 246.432, - "WipMemBlock": "bf900d47-d7d9-4fc8-8a39-1992f522e2af||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "60f8628f-854d-4bd2-9886-7dc40e156a62||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9950048923492432, -0.08396422863006592, 0.11360155045986176, 105.41881561279297], [-0.1187247633934021, 1.8681559562683105, -0.7042001485824585, -62.526145935058594], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "110043.490000", + "AcquisitionTime": "112702.247500", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "110159.226000", + "ContentTime": "112839.155000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259131, + "ImagingFrequency": 123.259145, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "110159.226000", + "InstanceCreationTime": "112839.155000", "InstanceNumber": 1, - "LargestImagePixelValue": 59821, + "LargestImagePixelValue": 57111, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e01a", + "ProtocolName": "func_task-s01e02a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.038401406525, + "SAR": 0.03839806751426, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e01a_SBRef", - "SeriesNumber": 9, - "SeriesTime": "110159.223000", + "SeriesDescription": "func_task-s01e02a_SBRef", + "SeriesNumber": 13, + "SeriesTime": "112839.152000", "SliceLocation": -34.499927506096, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "102747.562000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12402.0, + "WindowCenter": 12218.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 26499.0, + "WindowWidth": 25998.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-01/ses-001/func/sub-01_ses-001_task-s01e03a_sbref.nii.gz b/sub-01/ses-001/func/sub-01_ses-001_task-s01e03a_sbref.nii.gz new file mode 120000 index 00000000000..e8ccc69243d --- /dev/null +++ b/sub-01/ses-001/func/sub-01_ses-001_task-s01e03a_sbref.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/F6/5Z/SHA256E-s1103241--9ca6504d3f97862ca6d76b8c337e48cdc02e66855b09ca301bf8f0845929d93c.nii.gz/SHA256E-s1103241--9ca6504d3f97862ca6d76b8c337e48cdc02e66855b09ca301bf8f0845929d93c.nii.gz \ No newline at end of file diff --git a/sub-01/ses-001/func/sub-01_ses-001_task-s01e03b_bold.json b/sub-01/ses-001/func/sub-01_ses-001_task-s01e03b_bold.json new file mode 100644 index 00000000000..0da492c6beb --- /dev/null +++ b/sub-01/ses-001/func/sub-01_ses-001_task-s01e03b_bold.json @@ -0,0 +1,168 @@ +{ + "AcquisitionMatrixPE": 104, + "AcquisitionNumber": 1, + "AcquisitionTime": "11:39:30.855000", + "BandwidthPerPixelPhaseEncode": 17.17, + "BaseResolution": 104, + "BodyPartExamined": "BRAIN", + "CoilString": "HC1-7;NC1_2", + "ConsistencyInfo": "N4_VE11C_LATEST_20160120", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", + "DerivedVendorReportedEchoSpacing": 0.000560011, + "DeviceSerialNumber": "167006", + "DwellTime": 2.1e-06, + "EchoTime": 0.037, + "EchoTrainLength": 104, + "EffectiveEchoSpacing": 0.000560011, + "FlipAngle": 52, + "ImageComments": "Unaliased_MB4_PE3_LB", + "ImageOrientationPatientDICOM": [0.997502, 0.0593624, 0.0382744, -0.0419821, 0.934078, -0.354593], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagingFrequency": 123.259, + "InPlanePhaseEncodingDirectionDICOM": "COL", + "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", + "InstitutionName": "IUGM", + "InstitutionalDepartmentName": "Department", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma_fit", + "Modality": "MR", + "MultibandAccelerationFactor": 4, + "PartialFourier": 1, + "PatientPosition": "HFS", + "PercentPhaseFOV": 100, + "PhaseEncodingDirection": "j", + "PhaseEncodingSteps": 104, + "PhaseResolution": 1, + "PixelBandwidth": 2290, + "ProcedureStepDescription": "video_friends", + "ProtocolName": "func_task-s01e02b", + "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", + "ReceiveCoilActiveElements": "HC1-7;NC1,2", + "ReceiveCoilName": "HeadNeck_64", + "ReconMatrixPE": 104, + "RepetitionTime": 1.49, + "SAR": 0.0383981, + "ScanOptions": "FS", + "ScanningSequence": "EP", + "SequenceName": "epfid2d1_104", + "SequenceVariant": "SK_SS", + "SeriesDescription": "func_task-s01e02b", + "SeriesNumber": 16, + "ShimSetting": [639, -7202, -8827, 719, 124, -21, 1, -22], + "SliceThickness": 2, + "SliceTiming": [0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875], + "SoftwareVersions": "syngo_MR_E11", + "SpacingBetweenSlices": 2, + "StationName": "MRC35049", + "TaskName": "friends", + "TotalReadoutTime": 0.0576811, + "TxRefAmp": 246.432, + "WipMemBlock": "e548b985-4114-4fe4-8b9e-64ec5d532c2e||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "dcmmeta_affine": [ + [-1.9950048923492432, -0.08396422863006592, 0.11360155045986176, 105.41881561279297], + [-0.1187247633934021, 1.8681559562683105, -0.7042001485824585, -62.526145935058594], + [0.07654888927936554, 0.7091850638389587, 1.8684744834899902, -66.90298461914062], + [0.0, 0.0, 0.0, 1.0] +], + "dcmmeta_reorient_transform": [ + [0.0, -1.0, 0.0, 103.0], + [1.0, 0.0, 0.0, 0.0], + [0.0, 0.0, 1.0, 0.0], + [0.0, 0.0, 0.0, 1.0] +], + "dcmmeta_shape": [104, 104, 60, 472], + "dcmmeta_slice_dim": 2, + "dcmmeta_version": 0.6, + "global": { + "const": { + "AcquisitionMatrix": [104, 0, 0, 104], + "AngioFlag": "N", + "BitsAllocated": 16, + "BitsStored": 16, + "BodyPartExamined": "BRAIN", + "Columns": 832, + "EchoNumbers": 1, + "EchoTime": 37.0, + "EchoTrainLength": 104, + "FlipAngle": 52.0, + "HighBit": 15, + "ImageOrientationPatient": [0.99750246833527, 0.05936238327832, 0.03827444469307, -0.0419821141674, 0.93407796655556, -0.3545925189361], + "ImagePositionPatient": [-792.38931962213, -853.11849143837, 236.42263424543], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagedNucleus": "1H", + "ImagingFrequency": 123.259151, + "InPlanePhaseEncodingDirection": "COL", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3.0, + "Manufacturer": "SIEMENS", + "ManufacturerModelName": "Prisma_fit", + "Modality": "MR", + "NumberOfAverages": 1.0, + "NumberOfPhaseEncodingSteps": 104, + "PercentPhaseFieldOfView": 100.0, + "PercentSampling": 100.0, + "PerformedProcedureStepStartTime": "102747.635000", + "PhotometricInterpretation": "MONOCHROME2", + "PixelBandwidth": 2290.0, + "PixelRepresentation": 0, + "PixelSpacing": [2.0, 2.0], + "ProtocolName": 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@@ +../../../.git/annex/objects/QF/Qm/SHA256E-s508036190--de80ec18f11b400c272f1730cfdf0d8af56faf55d802537fab9a1a9541676af8.nii.gz/SHA256E-s508036190--de80ec18f11b400c272f1730cfdf0d8af56faf55d802537fab9a1a9541676af8.nii.gz \ No newline at end of file diff --git a/sub-01/ses-001/func/sub-01_ses-001_task-s01e06b_sbref.json b/sub-01/ses-001/func/sub-01_ses-001_task-s01e03b_sbref.json similarity index 81% rename from sub-01/ses-001/func/sub-01_ses-001_task-s01e06b_sbref.json rename to sub-01/ses-001/func/sub-01_ses-001_task-s01e03b_sbref.json index fc95c0d26dd..cfdc2824584 100644 --- a/sub-01/ses-001/func/sub-01_ses-001_task-s01e06b_sbref.json +++ b/sub-01/ses-001/func/sub-01_ses-001_task-s01e03b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "11:14:0.090000", + "AcquisitionTime": "11:39:20.425000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e01b", + "ProtocolName": "func_task-s01e02b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0384014, + "SAR": 0.0383981, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e01b_SBRef", - "SeriesNumber": 11, + "SeriesDescription": "func_task-s01e02b_SBRef", + "SeriesNumber": 15, "ShimSetting": [639, -7202, -8827, 719, 124, -21, 1, -22], "SliceThickness": 2, - "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.08, 1.1775, 1.275, 1.3725, 1.47, 1.57, 1.6675, 1.765, 1.8625, 1.96, 2.06, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825], + "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 246.432, - "WipMemBlock": "b76d64f2-3cdf-4bf0-b5d9-11377e29a785||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "e548b985-4114-4fe4-8b9e-64ec5d532c2e||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9950048923492432, -0.08396422863006592, 0.11360155045986176, 105.41881561279297], [-0.1187247633934021, 1.8681559562683105, -0.7042001485824585, -62.526145935058594], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "111400.090000", + "AcquisitionTime": "113920.425000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "111539.296000", + "ContentTime": "114059.225000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259141, + "ImagingFrequency": 123.259151, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "111539.296000", + "InstanceCreationTime": "114059.225000", "InstanceNumber": 1, - "LargestImagePixelValue": 59540, + "LargestImagePixelValue": 58222, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e01b", + "ProtocolName": "func_task-s01e02b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.038401406525, + "SAR": 0.03839806751426, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e01b_SBRef", - "SeriesNumber": 11, - "SeriesTime": "111539.293000", + "SeriesDescription": "func_task-s01e02b_SBRef", + "SeriesNumber": 15, + "SeriesTime": "114059.222000", "SliceLocation": -34.499927506096, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "102747.562000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12315.0, + "WindowCenter": 12248.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 26248.0, + "WindowWidth": 26056.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-01/ses-001/func/sub-01_ses-001_task-s01e03b_sbref.nii.gz b/sub-01/ses-001/func/sub-01_ses-001_task-s01e03b_sbref.nii.gz new file mode 120000 index 00000000000..58c06afbb5d --- /dev/null +++ b/sub-01/ses-001/func/sub-01_ses-001_task-s01e03b_sbref.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/6W/Mv/SHA256E-s1103628--2880a3438fc3bc4d8fd21db6c2f7929351ef32efcbfa581cdb106bc11c81c63b.nii.gz/SHA256E-s1103628--2880a3438fc3bc4d8fd21db6c2f7929351ef32efcbfa581cdb106bc11c81c63b.nii.gz \ No newline at end of file diff --git a/sub-01/ses-001/func/sub-01_ses-001_task-s01e06a_bold.json b/sub-01/ses-001/func/sub-01_ses-001_task-s01e06a_bold.json deleted file mode 100644 index 217c81f18a5..00000000000 --- a/sub-01/ses-001/func/sub-01_ses-001_task-s01e06a_bold.json +++ /dev/null @@ -1,168 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "11:00:53.920000", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - 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a/sub-01/ses-001/func/sub-01_ses-001_task-s01e06b_bold.json b/sub-01/ses-001/func/sub-01_ses-001_task-s01e06b_bold.json deleted file mode 100644 index a948227c0e0..00000000000 --- a/sub-01/ses-001/func/sub-01_ses-001_task-s01e06b_bold.json +++ /dev/null @@ -1,168 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "11:14:10.520000", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": "167006", - "DwellTime": 2.1e-06, - "EchoTime": 0.037, - "EchoTrainLength": 104, - "EffectiveEchoSpacing": 0.000560011, - "FlipAngle": 52, - "ImageComments": "Unaliased_MB4_PE3_LB", - "ImageOrientationPatientDICOM": [0.997502, 0.0593624, 0.0382744, -0.0419821, 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a/sub-01/ses-002/func/sub-01_ses-002_task-s01e03b_bold.json +++ /dev/null @@ -1,168 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "10:11:58.725000", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": "167006", - "DwellTime": 2.1e-06, - "EchoTime": 0.037, - "EchoTrainLength": 104, - "EffectiveEchoSpacing": 0.000560011, - "FlipAngle": 52, - "ImageComments": "Unaliased_MB4_PE3_LB", - "ImageOrientationPatientDICOM": [0.997526, 0.0573246, 0.0406876, -0.0425064, 0.952872, -0.30038], - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "MB", - "ND", - "MOSAIC" -], - "ImagingFrequency": 123.259, - "InPlanePhaseEncodingDirectionDICOM": "COL", - 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a/sub-01/ses-002/func/sub-01_ses-002_task-s01e03b_bold.nii.gz b/sub-01/ses-002/func/sub-01_ses-002_task-s01e03b_bold.nii.gz deleted file mode 120000 index deced80d334..00000000000 --- a/sub-01/ses-002/func/sub-01_ses-002_task-s01e03b_bold.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/5J/jv/SHA256E-s540430640--19c9c7663f5bd1af122d98f85023803d6f7a775937575836ab1b5c508c056f8c.nii.gz/SHA256E-s540430640--19c9c7663f5bd1af122d98f85023803d6f7a775937575836ab1b5c508c056f8c.nii.gz \ No newline at end of file diff --git a/sub-01/ses-002/func/sub-01_ses-002_task-s01e03b_sbref.nii.gz b/sub-01/ses-002/func/sub-01_ses-002_task-s01e03b_sbref.nii.gz deleted file mode 120000 index 536620b114b..00000000000 --- a/sub-01/ses-002/func/sub-01_ses-002_task-s01e03b_sbref.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/Z7/pw/SHA256E-s1101446--e9af937c7b7f3a929c36a37bcf386917d83e44fd3553ed9f2502be4018eb5bcb.nii.gz/SHA256E-s1101446--e9af937c7b7f3a929c36a37bcf386917d83e44fd3553ed9f2502be4018eb5bcb.nii.gz \ No newline at end of file diff --git a/sub-01/ses-002/func/sub-01_ses-002_task-s01e04a_bold.json b/sub-01/ses-002/func/sub-01_ses-002_task-s01e04a_bold.json index 4137a3f14e3..56b7260735b 100644 --- a/sub-01/ses-002/func/sub-01_ses-002_task-s01e04a_bold.json +++ b/sub-01/ses-002/func/sub-01_ses-002_task-s01e04a_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "10:24:57.922500", + "AcquisitionTime": "09:58:58.790000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -45,29 +45,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e04a", + "ProtocolName": "func_task-s01e03a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0372874, + "SAR": 0.0372984, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e04a", - "SeriesNumber": 12, + "SeriesDescription": "func_task-s01e03a", + "SeriesNumber": 8, "ShimSetting": [640, -7192, -8818, 741, 113, 30, 14, -5], "SliceThickness": 2, - "SliceTiming": [0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685], + "SliceTiming": [0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 247.001, - "WipMemBlock": "d039df4f-373c-4cbd-84c3-1bc14c167ebf||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "5e7bb68e-18d4-40e1-96ed-05d774b580fe||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9950523376464844, -0.0850127711892128, 0.11197857558727264, 104.48595428466797], [-0.11464917659759521, 1.905743956565857, -0.5958151817321777, -66.89926147460938], @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 468], + "dcmmeta_shape": [104, 104, 60, 503], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259162, + "ImagingFrequency": 123.259143, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e04a", + "ProtocolName": "func_task-s01e03a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03728743105912, + "SAR": 0.03729839608856, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,9 +135,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e04a", - "SeriesNumber": 12, - "SeriesTime": "102610.037000", + "SeriesDescription": "func_task-s01e03a", + "SeriesNumber": 8, + "SeriesTime": "100009.893000", 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21463.0, 21461.0, 21501.0, 21553.0, 21569.0, 21536.0, 21528.0, 21573.0, 21609.0, 21606.0, 21602.0, 21560.0, 21549.0, 21485.0, 21455.0, 21523.0, 21526.0, 21496.0, 21439.0, 21418.0, 21421.0, 21392.0, 21340.0, 21342.0, 21405.0, 21473.0, 21457.0, 21441.0] }, "slices": {} } diff --git a/sub-01/ses-002/func/sub-01_ses-002_task-s01e04a_bold.nii.gz b/sub-01/ses-002/func/sub-01_ses-002_task-s01e04a_bold.nii.gz index adedf0b9edc..11b5222283c 120000 --- a/sub-01/ses-002/func/sub-01_ses-002_task-s01e04a_bold.nii.gz +++ b/sub-01/ses-002/func/sub-01_ses-002_task-s01e04a_bold.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/fj/14/SHA256E-s503282085--43989c195bd2250414d6fbd01ace10f36c527b1bff246f6d5088eb367aaa651b.nii.gz/SHA256E-s503282085--43989c195bd2250414d6fbd01ace10f36c527b1bff246f6d5088eb367aaa651b.nii.gz \ No newline at end of file +../../../.git/annex/objects/qM/f7/SHA256E-s540329493--368d2b6579afce068cc7fc07b1c163c899f8bcc5cea48286fa0605d80735a488.nii.gz/SHA256E-s540329493--368d2b6579afce068cc7fc07b1c163c899f8bcc5cea48286fa0605d80735a488.nii.gz \ No newline at end of file diff --git a/sub-01/ses-002/func/sub-01_ses-002_task-s01e04a_sbref.json b/sub-01/ses-002/func/sub-01_ses-002_task-s01e04a_sbref.json index fabcb614d9d..172a30dba84 100644 --- a/sub-01/ses-002/func/sub-01_ses-002_task-s01e04a_sbref.json +++ b/sub-01/ses-002/func/sub-01_ses-002_task-s01e04a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "10:24:47.492500", + "AcquisitionTime": "09:58:48.360000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e04a", + "ProtocolName": "func_task-s01e03a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0372874, + "SAR": 0.0372984, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e04a_SBRef", - "SeriesNumber": 11, + "SeriesDescription": "func_task-s01e03a_SBRef", + "SeriesNumber": 7, "ShimSetting": [640, -7192, -8818, 741, 113, 30, 14, -5], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.45, 2.5475, 2.645, 2.7425, 2.84, 2.94, 3.0375, 3.135, 3.2325, 3.33, 3.43, 3.5275, 3.625, 3.7225, 3.82, 3.9175, 4.0175, 4.115, 4.2125, 4.31, 4.4075, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78], + "SliceTiming": [0, 0.0975, 0.1975, 0.295, 0.3925, 0.49, 0.5875, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.645, 2.745, 2.8425, 2.94, 3.0375, 3.135, 3.235, 3.3325, 3.43, 3.5275, 3.625, 3.725, 3.8225, 3.92, 4.0175, 4.115, 4.215, 4.3125, 4.41, 4.5075, 4.605, 4.705, 4.8025, 4.9, 4.9975, 5.095, 5.195, 5.2925, 5.39, 5.4875, 5.585, 5.685, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 247.001, - "WipMemBlock": "d039df4f-373c-4cbd-84c3-1bc14c167ebf||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "5e7bb68e-18d4-40e1-96ed-05d774b580fe||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9950523376464844, -0.0850127711892128, 0.11197857558727264, 104.48595428466797], [-0.11464917659759521, 1.905743956565857, -0.5958151817321777, -66.89926147460938], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "102447.492500", + "AcquisitionTime": "095848.360000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "102610.010000", + "ContentTime": "100009.871000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259162, + "ImagingFrequency": 123.259143, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "102610.010000", + "InstanceCreationTime": "100009.871000", "InstanceNumber": 1, - "LargestImagePixelValue": 55966, + "LargestImagePixelValue": 60154, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e04a", + "ProtocolName": "func_task-s01e03a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03728743105912, + "SAR": 0.03729839608856, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e04a_SBRef", - "SeriesNumber": 11, - "SeriesTime": "102610.006000", + "SeriesDescription": "func_task-s01e03a_SBRef", + "SeriesNumber": 7, + "SeriesTime": "100009.867000", "SliceLocation": -31.289625410948, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "092649.056000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12107.0, + "WindowCenter": 12277.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 25671.0, + "WindowWidth": 26141.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-01/ses-002/func/sub-01_ses-002_task-s01e04a_sbref.nii.gz b/sub-01/ses-002/func/sub-01_ses-002_task-s01e04a_sbref.nii.gz index a14b951b94f..300cc54c6b4 120000 --- a/sub-01/ses-002/func/sub-01_ses-002_task-s01e04a_sbref.nii.gz +++ b/sub-01/ses-002/func/sub-01_ses-002_task-s01e04a_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/37/3F/SHA256E-s1102535--5d0b93065975175b0cd542f6289c39838b0244b4ffaa5f01efe32e7a2a61f8fa.nii.gz/SHA256E-s1102535--5d0b93065975175b0cd542f6289c39838b0244b4ffaa5f01efe32e7a2a61f8fa.nii.gz \ No newline at end of file +../../../.git/annex/objects/JJ/4x/SHA256E-s1101892--4ed057b1f33fe0c37cdedeabba0a9712c4ba23c643d291933499c66b964d0d64.nii.gz/SHA256E-s1101892--4ed057b1f33fe0c37cdedeabba0a9712c4ba23c643d291933499c66b964d0d64.nii.gz \ No newline at end of file diff --git a/sub-01/ses-002/func/sub-01_ses-002_task-s01e04b_bold.json b/sub-01/ses-002/func/sub-01_ses-002_task-s01e04b_bold.json index ed9c26a933e..456493abaa0 100644 --- a/sub-01/ses-002/func/sub-01_ses-002_task-s01e04b_bold.json +++ b/sub-01/ses-002/func/sub-01_ses-002_task-s01e04b_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "10:37:1.745000", + "AcquisitionTime": "10:11:58.725000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -45,29 +45,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e04b", + "ProtocolName": "func_task-s01e03b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0372874, + "SAR": 0.0372984, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e04b", - "SeriesNumber": 14, + "SeriesDescription": "func_task-s01e03b", + "SeriesNumber": 10, "ShimSetting": [640, -7192, -8818, 741, 113, 30, 14, -5], "SliceThickness": 2, - "SliceTiming": [0, 0.7825, 0.0975, 0.8825, 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b/sub-01/ses-002/func/sub-01_ses-002_task-s01e04b_bold.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/0k/vV/SHA256E-s503200804--21771ce73e22c11222d6a0b5e186b84d4a0e74f3394100130e59e2c945f2b9f0.nii.gz/SHA256E-s503200804--21771ce73e22c11222d6a0b5e186b84d4a0e74f3394100130e59e2c945f2b9f0.nii.gz \ No newline at end of file +../../../.git/annex/objects/5J/jv/SHA256E-s540430640--19c9c7663f5bd1af122d98f85023803d6f7a775937575836ab1b5c508c056f8c.nii.gz/SHA256E-s540430640--19c9c7663f5bd1af122d98f85023803d6f7a775937575836ab1b5c508c056f8c.nii.gz \ No newline at end of file diff --git a/sub-01/ses-002/func/sub-01_ses-002_task-s01e04b_sbref.json b/sub-01/ses-002/func/sub-01_ses-002_task-s01e04b_sbref.json index e871c9fa508..ed3f35552a9 100644 --- a/sub-01/ses-002/func/sub-01_ses-002_task-s01e04b_sbref.json +++ b/sub-01/ses-002/func/sub-01_ses-002_task-s01e04b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "10:36:51.315000", + "AcquisitionTime": "10:11:48.295000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e04b", + "ProtocolName": "func_task-s01e03b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0372874, + "SAR": 0.0372984, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e04b_SBRef", - "SeriesNumber": 13, + "SeriesDescription": "func_task-s01e03b_SBRef", + "SeriesNumber": 9, "ShimSetting": [640, -7192, -8818, 741, 113, 30, 14, -5], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.3925, 0.49, 0.5875, 0.685, 0.7825, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.82, 3.92, 4.0175, 4.115, 4.2125, 4.31, 4.41, 4.5075, 4.605, 4.7025, 4.8, 4.9, 4.9975, 5.095, 5.1925, 5.29, 5.39, 5.4875, 5.585, 5.6825, 5.78], + "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.5875, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.585, 5.685, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 247.001, - "WipMemBlock": "4a6d2dba-54ef-4061-ae89-c23b4c597c9f||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "d8ffa88f-6e26-4f20-aea8-b99c5c8e0456||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9950523376464844, -0.0850127711892128, 0.11197857558727264, 104.48595428466797], [-0.11464917659759521, 1.905743956565857, -0.5958151817321777, -66.89926147460938], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "103651.315000", + "AcquisitionTime": "101148.295000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "103829.871000", + "ContentTime": "101329.938000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259167, + "ImagingFrequency": 123.259155, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "103829.871000", + "InstanceCreationTime": "101329.938000", "InstanceNumber": 1, - "LargestImagePixelValue": 56603, + "LargestImagePixelValue": 56996, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e04b", + "ProtocolName": "func_task-s01e03b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03728743105912, + "SAR": 0.03729839608856, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e04b_SBRef", - "SeriesNumber": 13, - "SeriesTime": "103829.867000", + "SeriesDescription": "func_task-s01e03b_SBRef", + "SeriesNumber": 9, + "SeriesTime": "101329.935000", "SliceLocation": -31.289625410948, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "092649.056000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12054.0, + "WindowCenter": 12094.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 25523.0, + "WindowWidth": 25646.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-01/ses-002/func/sub-01_ses-002_task-s01e04b_sbref.nii.gz b/sub-01/ses-002/func/sub-01_ses-002_task-s01e04b_sbref.nii.gz index d1d4a0b3a40..536620b114b 120000 --- a/sub-01/ses-002/func/sub-01_ses-002_task-s01e04b_sbref.nii.gz +++ b/sub-01/ses-002/func/sub-01_ses-002_task-s01e04b_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/K0/k3/SHA256E-s1101851--62c70fef7cc66068348339f193e08183c232a1f1a758a64c8f38ae78c40814f1.nii.gz/SHA256E-s1101851--62c70fef7cc66068348339f193e08183c232a1f1a758a64c8f38ae78c40814f1.nii.gz \ No newline at end of file +../../../.git/annex/objects/Z7/pw/SHA256E-s1101446--e9af937c7b7f3a929c36a37bcf386917d83e44fd3553ed9f2502be4018eb5bcb.nii.gz/SHA256E-s1101446--e9af937c7b7f3a929c36a37bcf386917d83e44fd3553ed9f2502be4018eb5bcb.nii.gz \ No newline at end of file diff --git a/sub-01/ses-002/func/sub-01_ses-002_task-s01e05a_bold.json b/sub-01/ses-002/func/sub-01_ses-002_task-s01e05a_bold.json new file mode 100644 index 00000000000..4137a3f14e3 --- /dev/null +++ b/sub-01/ses-002/func/sub-01_ses-002_task-s01e05a_bold.json @@ -0,0 +1,168 @@ +{ + "AcquisitionMatrixPE": 104, + "AcquisitionNumber": 1, + "AcquisitionTime": "10:24:57.922500", + "BandwidthPerPixelPhaseEncode": 17.17, + "BaseResolution": 104, + "BodyPartExamined": "BRAIN", + "CoilString": "HC1-7;NC1_2", + "ConsistencyInfo": "N4_VE11C_LATEST_20160120", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", + "DerivedVendorReportedEchoSpacing": 0.000560011, + "DeviceSerialNumber": "167006", + "DwellTime": 2.1e-06, + "EchoTime": 0.037, + "EchoTrainLength": 104, + "EffectiveEchoSpacing": 0.000560011, + "FlipAngle": 52, + "ImageComments": "Unaliased_MB4_PE3_LB", + "ImageOrientationPatientDICOM": [0.997526, 0.0573246, 0.0406876, -0.0425064, 0.952872, -0.30038], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagingFrequency": 123.259, + "InPlanePhaseEncodingDirectionDICOM": "COL", + "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", + "InstitutionName": "IUGM", + "InstitutionalDepartmentName": "Department", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma_fit", + "Modality": "MR", + "MultibandAccelerationFactor": 4, + "PartialFourier": 1, + "PatientPosition": "HFS", + "PercentPhaseFOV": 100, + "PhaseEncodingDirection": "j", + "PhaseEncodingSteps": 104, + "PhaseResolution": 1, + "PixelBandwidth": 2290, + "ProcedureStepDescription": "video_friends", + "ProtocolName": "func_task-s01e04a", + "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", + "ReceiveCoilActiveElements": "HC1-7;NC1,2", + "ReceiveCoilName": "HeadNeck_64", + "ReconMatrixPE": 104, + "RepetitionTime": 1.49, + "SAR": 0.0372874, + "ScanOptions": "FS", + "ScanningSequence": "EP", + "SequenceName": "epfid2d1_104", + "SequenceVariant": "SK_SS", + "SeriesDescription": "func_task-s01e04a", + "SeriesNumber": 12, + "ShimSetting": [640, -7192, -8818, 741, 113, 30, 14, -5], + "SliceThickness": 2, + "SliceTiming": [0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685], + "SoftwareVersions": "syngo_MR_E11", + "SpacingBetweenSlices": 2, + "StationName": "MRC35049", + "TaskName": "friends", + "TotalReadoutTime": 0.0576811, + "TxRefAmp": 247.001, + "WipMemBlock": "d039df4f-373c-4cbd-84c3-1bc14c167ebf||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + 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[-790.98401787032, -864.81544733989, 191.0473476556], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagedNucleus": "1H", + "ImagingFrequency": 123.259162, + "InPlanePhaseEncodingDirection": "COL", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3.0, + "Manufacturer": "SIEMENS", + "ManufacturerModelName": "Prisma_fit", + "Modality": "MR", + "NumberOfAverages": 1.0, + "NumberOfPhaseEncodingSteps": 104, + "PercentPhaseFieldOfView": 100.0, + "PercentSampling": 100.0, + "PerformedProcedureStepStartTime": "092649.252000", + "PhotometricInterpretation": "MONOCHROME2", + "PixelBandwidth": 2290.0, + "PixelRepresentation": 0, + "PixelSpacing": [2.0, 2.0], + "ProtocolName": "func_task-s01e04a", + "RepetitionTime": 1490.0, + "Rows": 832, + "SAR": 0.03728743105912, + "SamplesPerPixel": 1, + "ScanOptions": "FS", + "ScanningSequence": "EP", + "SequenceName": "epfid2d1_104", + "SequenceVariant": [ + "SK", + "SS" +], + "SeriesDescription": 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21368.0, 21373.0, 21415.0, 21430.0, 21468.0, 21448.0, 21377.0, 21345.0] + }, + "slices": {} + } +} \ No newline at end of file diff --git a/sub-01/ses-002/func/sub-01_ses-002_task-s01e05a_bold.nii.gz b/sub-01/ses-002/func/sub-01_ses-002_task-s01e05a_bold.nii.gz new file mode 120000 index 00000000000..adedf0b9edc --- /dev/null +++ b/sub-01/ses-002/func/sub-01_ses-002_task-s01e05a_bold.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/fj/14/SHA256E-s503282085--43989c195bd2250414d6fbd01ace10f36c527b1bff246f6d5088eb367aaa651b.nii.gz/SHA256E-s503282085--43989c195bd2250414d6fbd01ace10f36c527b1bff246f6d5088eb367aaa651b.nii.gz \ No newline at end of file diff --git a/sub-01/ses-002/func/sub-01_ses-002_task-s01e03a_sbref.json b/sub-01/ses-002/func/sub-01_ses-002_task-s01e05a_sbref.json similarity index 80% rename from sub-01/ses-002/func/sub-01_ses-002_task-s01e03a_sbref.json rename to sub-01/ses-002/func/sub-01_ses-002_task-s01e05a_sbref.json index 172a30dba84..fabcb614d9d 100644 --- a/sub-01/ses-002/func/sub-01_ses-002_task-s01e03a_sbref.json +++ b/sub-01/ses-002/func/sub-01_ses-002_task-s01e05a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "09:58:48.360000", + "AcquisitionTime": "10:24:47.492500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e03a", + "ProtocolName": "func_task-s01e04a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0372984, + "SAR": 0.0372874, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e03a_SBRef", - "SeriesNumber": 7, + "SeriesDescription": "func_task-s01e04a_SBRef", + "SeriesNumber": 11, "ShimSetting": [640, -7192, -8818, 741, 113, 30, 14, -5], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.1975, 0.295, 0.3925, 0.49, 0.5875, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.645, 2.745, 2.8425, 2.94, 3.0375, 3.135, 3.235, 3.3325, 3.43, 3.5275, 3.625, 3.725, 3.8225, 3.92, 4.0175, 4.115, 4.215, 4.3125, 4.41, 4.5075, 4.605, 4.705, 4.8025, 4.9, 4.9975, 5.095, 5.195, 5.2925, 5.39, 5.4875, 5.585, 5.685, 5.7825], + "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.45, 2.5475, 2.645, 2.7425, 2.84, 2.94, 3.0375, 3.135, 3.2325, 3.33, 3.43, 3.5275, 3.625, 3.7225, 3.82, 3.9175, 4.0175, 4.115, 4.2125, 4.31, 4.4075, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 247.001, - "WipMemBlock": "5e7bb68e-18d4-40e1-96ed-05d774b580fe||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "d039df4f-373c-4cbd-84c3-1bc14c167ebf||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9950523376464844, -0.0850127711892128, 0.11197857558727264, 104.48595428466797], [-0.11464917659759521, 1.905743956565857, -0.5958151817321777, -66.89926147460938], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "095848.360000", + "AcquisitionTime": "102447.492500", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "100009.871000", + "ContentTime": "102610.010000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259143, + "ImagingFrequency": 123.259162, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "100009.871000", + "InstanceCreationTime": "102610.010000", "InstanceNumber": 1, - "LargestImagePixelValue": 60154, + "LargestImagePixelValue": 55966, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e03a", + "ProtocolName": "func_task-s01e04a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03729839608856, + "SAR": 0.03728743105912, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e03a_SBRef", - "SeriesNumber": 7, - "SeriesTime": "100009.867000", + "SeriesDescription": "func_task-s01e04a_SBRef", + "SeriesNumber": 11, + "SeriesTime": "102610.006000", "SliceLocation": -31.289625410948, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "092649.056000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12277.0, + "WindowCenter": 12107.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 26141.0, + "WindowWidth": 25671.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-01/ses-002/func/sub-01_ses-002_task-s01e05a_sbref.nii.gz b/sub-01/ses-002/func/sub-01_ses-002_task-s01e05a_sbref.nii.gz new file mode 120000 index 00000000000..a14b951b94f --- /dev/null +++ b/sub-01/ses-002/func/sub-01_ses-002_task-s01e05a_sbref.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/37/3F/SHA256E-s1102535--5d0b93065975175b0cd542f6289c39838b0244b4ffaa5f01efe32e7a2a61f8fa.nii.gz/SHA256E-s1102535--5d0b93065975175b0cd542f6289c39838b0244b4ffaa5f01efe32e7a2a61f8fa.nii.gz \ No newline at end of file diff --git a/sub-01/ses-002/func/sub-01_ses-002_task-s01e05b_bold.json b/sub-01/ses-002/func/sub-01_ses-002_task-s01e05b_bold.json new file mode 100644 index 00000000000..ed9c26a933e --- /dev/null +++ b/sub-01/ses-002/func/sub-01_ses-002_task-s01e05b_bold.json @@ -0,0 +1,168 @@ +{ + "AcquisitionMatrixPE": 104, + "AcquisitionNumber": 1, + "AcquisitionTime": "10:37:1.745000", + "BandwidthPerPixelPhaseEncode": 17.17, + "BaseResolution": 104, + "BodyPartExamined": "BRAIN", + "CoilString": "HC1-7;NC1_2", + "ConsistencyInfo": "N4_VE11C_LATEST_20160120", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", + "DerivedVendorReportedEchoSpacing": 0.000560011, + "DeviceSerialNumber": "167006", + "DwellTime": 2.1e-06, + "EchoTime": 0.037, + "EchoTrainLength": 104, + "EffectiveEchoSpacing": 0.000560011, + "FlipAngle": 52, + "ImageComments": "Unaliased_MB4_PE3_LB", + "ImageOrientationPatientDICOM": [0.997526, 0.0573246, 0.0406876, -0.0425064, 0.952872, -0.30038], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagingFrequency": 123.259, + "InPlanePhaseEncodingDirectionDICOM": "COL", + "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", + "InstitutionName": "IUGM", + "InstitutionalDepartmentName": "Department", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma_fit", + "Modality": "MR", + "MultibandAccelerationFactor": 4, + "PartialFourier": 1, + "PatientPosition": "HFS", + "PercentPhaseFOV": 100, + "PhaseEncodingDirection": "j", + "PhaseEncodingSteps": 104, + "PhaseResolution": 1, + "PixelBandwidth": 2290, + "ProcedureStepDescription": "video_friends", + "ProtocolName": "func_task-s01e04b", + "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", + "ReceiveCoilActiveElements": "HC1-7;NC1,2", + "ReceiveCoilName": "HeadNeck_64", + "ReconMatrixPE": 104, + "RepetitionTime": 1.49, + "SAR": 0.0372874, + "ScanOptions": "FS", + "ScanningSequence": "EP", + "SequenceName": "epfid2d1_104", + "SequenceVariant": "SK_SS", + "SeriesDescription": "func_task-s01e04b", + "SeriesNumber": 14, + "ShimSetting": [640, -7192, -8818, 741, 113, 30, 14, -5], + "SliceThickness": 2, + "SliceTiming": [0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685], + "SoftwareVersions": "syngo_MR_E11", + "SpacingBetweenSlices": 2, + "StationName": "MRC35049", + "TaskName": "friends", + "TotalReadoutTime": 0.0576811, + "TxRefAmp": 247.001, + "WipMemBlock": "4a6d2dba-54ef-4061-ae89-c23b4c597c9f||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "dcmmeta_affine": [ + [-1.9950523376464844, -0.0850127711892128, 0.11197857558727264, 104.48595428466797], + [-0.11464917659759521, 1.905743956565857, -0.5958151817321777, -66.89926147460938], + [0.08137529343366623, 0.6007603406906128, 1.9059027433395386, -59.887123107910156], + [0.0, 0.0, 0.0, 1.0] +], + "dcmmeta_reorient_transform": [ + [0.0, -1.0, 0.0, 103.0], + [1.0, 0.0, 0.0, 0.0], + [0.0, 0.0, 1.0, 0.0], + [0.0, 0.0, 0.0, 1.0] +], + "dcmmeta_shape": [104, 104, 60, 468], + "dcmmeta_slice_dim": 2, + "dcmmeta_version": 0.6, + "global": { + "const": { + "AcquisitionMatrix": [104, 0, 0, 104], + "AngioFlag": "N", + "BitsAllocated": 16, + "BitsStored": 16, + "BodyPartExamined": "BRAIN", + "Columns": 832, + "EchoNumbers": 1, + "EchoTime": 37.0, + "EchoTrainLength": 104, + "FlipAngle": 52.0, + "HighBit": 15, + "ImageOrientationPatient": [0.99752614345702, 0.05732459015246, 0.04068764534362, -0.0425063871394, 0.95287195408884, -0.3003801693908], + "ImagePositionPatient": [-790.98401787032, -864.81544733989, 191.0473476556], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagedNucleus": "1H", + "ImagingFrequency": 123.259167, + "InPlanePhaseEncodingDirection": "COL", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3.0, + "Manufacturer": "SIEMENS", + "ManufacturerModelName": "Prisma_fit", + "Modality": "MR", + "NumberOfAverages": 1.0, + "NumberOfPhaseEncodingSteps": 104, + "PercentPhaseFieldOfView": 100.0, + "PercentSampling": 100.0, + "PerformedProcedureStepStartTime": "092649.252000", + "PhotometricInterpretation": "MONOCHROME2", + "PixelBandwidth": 2290.0, + "PixelRepresentation": 0, + "PixelSpacing": [2.0, 2.0], + "ProtocolName": "func_task-s01e04b", + "RepetitionTime": 1490.0, + "Rows": 832, + "SAR": 0.03728743105912, + "SamplesPerPixel": 1, + "ScanOptions": "FS", + "ScanningSequence": "EP", + "SequenceName": "epfid2d1_104", + "SequenceVariant": [ + "SK", + "SS" +], + "SeriesDescription": "func_task-s01e04b", + "SeriesNumber": 14, + "SeriesTime": "103829.904000", + "SliceLocation": -31.289625410948, + "SliceThickness": 2.0, + "SmallestImagePixelValue": 0, + "SoftwareVersions": "syngo MR E11", + "SpacingBetweenSlices": 2.0000000069546, + "SpecificCharacterSet": "ISO_IR 100", + "StudyID": "1", + "StudyTime": "092649.056000", + "TransmitCoilName": "Body", + "VariableFlipAngleFlag": "N", + "WindowCenterWidthExplanation": "Algo1", + "dBdt": 0.0}, + "slices": {} + }, + "time": { + "samples": { + "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 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21158.0, 21097.0, 21086.0, 21088.0, 21158.0, 21232.0, 21179.0, 21124.0, 21113.0] + }, + "slices": {} + } +} \ No newline at end of file diff --git a/sub-01/ses-002/func/sub-01_ses-002_task-s01e05b_bold.nii.gz b/sub-01/ses-002/func/sub-01_ses-002_task-s01e05b_bold.nii.gz new file mode 120000 index 00000000000..5ff5848276e --- /dev/null +++ b/sub-01/ses-002/func/sub-01_ses-002_task-s01e05b_bold.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/0k/vV/SHA256E-s503200804--21771ce73e22c11222d6a0b5e186b84d4a0e74f3394100130e59e2c945f2b9f0.nii.gz/SHA256E-s503200804--21771ce73e22c11222d6a0b5e186b84d4a0e74f3394100130e59e2c945f2b9f0.nii.gz \ No newline at end of file diff --git a/sub-01/ses-002/func/sub-01_ses-002_task-s01e03b_sbref.json b/sub-01/ses-002/func/sub-01_ses-002_task-s01e05b_sbref.json similarity index 80% rename from sub-01/ses-002/func/sub-01_ses-002_task-s01e03b_sbref.json rename to sub-01/ses-002/func/sub-01_ses-002_task-s01e05b_sbref.json index ed3f35552a9..e871c9fa508 100644 --- a/sub-01/ses-002/func/sub-01_ses-002_task-s01e03b_sbref.json +++ b/sub-01/ses-002/func/sub-01_ses-002_task-s01e05b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "10:11:48.295000", + "AcquisitionTime": "10:36:51.315000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e03b", + "ProtocolName": "func_task-s01e04b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0372984, + "SAR": 0.0372874, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e03b_SBRef", - "SeriesNumber": 9, + "SeriesDescription": "func_task-s01e04b_SBRef", + "SeriesNumber": 13, "ShimSetting": [640, -7192, -8818, 741, 113, 30, 14, -5], "SliceThickness": 2, - "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.5875, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.585, 5.685, 5.7825], + "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.3925, 0.49, 0.5875, 0.685, 0.7825, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.82, 3.92, 4.0175, 4.115, 4.2125, 4.31, 4.41, 4.5075, 4.605, 4.7025, 4.8, 4.9, 4.9975, 5.095, 5.1925, 5.29, 5.39, 5.4875, 5.585, 5.6825, 5.78], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 247.001, - "WipMemBlock": "d8ffa88f-6e26-4f20-aea8-b99c5c8e0456||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "4a6d2dba-54ef-4061-ae89-c23b4c597c9f||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9950523376464844, -0.0850127711892128, 0.11197857558727264, 104.48595428466797], [-0.11464917659759521, 1.905743956565857, -0.5958151817321777, -66.89926147460938], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "101148.295000", + "AcquisitionTime": "103651.315000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "101329.938000", + "ContentTime": "103829.871000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259155, + "ImagingFrequency": 123.259167, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "101329.938000", + "InstanceCreationTime": "103829.871000", "InstanceNumber": 1, - "LargestImagePixelValue": 56996, + "LargestImagePixelValue": 56603, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e03b", + "ProtocolName": "func_task-s01e04b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03729839608856, + "SAR": 0.03728743105912, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e03b_SBRef", - "SeriesNumber": 9, - "SeriesTime": "101329.935000", + "SeriesDescription": "func_task-s01e04b_SBRef", + "SeriesNumber": 13, + "SeriesTime": "103829.867000", "SliceLocation": -31.289625410948, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "092649.056000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12094.0, + "WindowCenter": 12054.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 25646.0, + "WindowWidth": 25523.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-01/ses-002/func/sub-01_ses-002_task-s01e05b_sbref.nii.gz b/sub-01/ses-002/func/sub-01_ses-002_task-s01e05b_sbref.nii.gz new file mode 120000 index 00000000000..d1d4a0b3a40 --- /dev/null +++ b/sub-01/ses-002/func/sub-01_ses-002_task-s01e05b_sbref.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/K0/k3/SHA256E-s1101851--62c70fef7cc66068348339f193e08183c232a1f1a758a64c8f38ae78c40814f1.nii.gz/SHA256E-s1101851--62c70fef7cc66068348339f193e08183c232a1f1a758a64c8f38ae78c40814f1.nii.gz \ No newline at end of file diff --git a/sub-01/ses-003/func/sub-01_ses-003_task-s01e05a_bold.json b/sub-01/ses-003/func/sub-01_ses-003_task-s01e06a_bold.json similarity index 100% rename from sub-01/ses-003/func/sub-01_ses-003_task-s01e05a_bold.json rename to sub-01/ses-003/func/sub-01_ses-003_task-s01e06a_bold.json diff --git a/sub-01/ses-003/func/sub-01_ses-003_task-s01e05a_bold.nii.gz b/sub-01/ses-003/func/sub-01_ses-003_task-s01e06a_bold.nii.gz similarity index 100% rename from sub-01/ses-003/func/sub-01_ses-003_task-s01e05a_bold.nii.gz rename to sub-01/ses-003/func/sub-01_ses-003_task-s01e06a_bold.nii.gz diff --git a/sub-01/ses-003/func/sub-01_ses-003_task-s01e05a_sbref.json b/sub-01/ses-003/func/sub-01_ses-003_task-s01e06a_sbref.json similarity index 100% rename from sub-01/ses-003/func/sub-01_ses-003_task-s01e05a_sbref.json rename to sub-01/ses-003/func/sub-01_ses-003_task-s01e06a_sbref.json diff --git a/sub-01/ses-003/func/sub-01_ses-003_task-s01e05a_sbref.nii.gz b/sub-01/ses-003/func/sub-01_ses-003_task-s01e06a_sbref.nii.gz similarity index 100% rename from sub-01/ses-003/func/sub-01_ses-003_task-s01e05a_sbref.nii.gz rename to sub-01/ses-003/func/sub-01_ses-003_task-s01e06a_sbref.nii.gz diff --git a/sub-01/ses-003/func/sub-01_ses-003_task-s01e05b_bold.json b/sub-01/ses-003/func/sub-01_ses-003_task-s01e06b_bold.json similarity index 100% rename from sub-01/ses-003/func/sub-01_ses-003_task-s01e05b_bold.json rename to sub-01/ses-003/func/sub-01_ses-003_task-s01e06b_bold.json diff --git a/sub-01/ses-003/func/sub-01_ses-003_task-s01e05b_bold.nii.gz b/sub-01/ses-003/func/sub-01_ses-003_task-s01e06b_bold.nii.gz similarity index 100% rename from sub-01/ses-003/func/sub-01_ses-003_task-s01e05b_bold.nii.gz rename to sub-01/ses-003/func/sub-01_ses-003_task-s01e06b_bold.nii.gz diff --git a/sub-01/ses-003/func/sub-01_ses-003_task-s01e05b_sbref.json b/sub-01/ses-003/func/sub-01_ses-003_task-s01e06b_sbref.json similarity index 100% rename from sub-01/ses-003/func/sub-01_ses-003_task-s01e05b_sbref.json rename to sub-01/ses-003/func/sub-01_ses-003_task-s01e06b_sbref.json diff --git a/sub-01/ses-003/func/sub-01_ses-003_task-s01e05b_sbref.nii.gz b/sub-01/ses-003/func/sub-01_ses-003_task-s01e06b_sbref.nii.gz similarity index 100% rename from sub-01/ses-003/func/sub-01_ses-003_task-s01e05b_sbref.nii.gz rename to sub-01/ses-003/func/sub-01_ses-003_task-s01e06b_sbref.nii.gz diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e02a_bold.json b/sub-02/ses-001/func/sub-02_ses-001_task-s01e02a_bold.json index 26f184244ea..5c30c27fc09 100644 --- a/sub-02/ses-001/func/sub-02_ses-001_task-s01e02a_bold.json +++ b/sub-02/ses-001/func/sub-02_ses-001_task-s01e02a_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "13:45:11.470000", + "AcquisitionTime": "13:20:9.982500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -45,29 +45,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e02a", + "ProtocolName": "func_task-s01e01a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0361849, + "SAR": 0.036188, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e02a", - "SeriesNumber": 14, + "SeriesDescription": "func_task-s01e01a", + "SeriesNumber": 10, "ShimSetting": [623, -7179, -8880, 411, -32, -157, 40, -32], "SliceThickness": 2, - "SliceTiming": [0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875], + "SliceTiming": [0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 250.688, - "WipMemBlock": "db65e698-57c6-49c8-913c-8cf135279b25||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "e2b4d124-2dcd-46f0-bb72-a3b5fce31e6f||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9991893768310547, 0.05339809134602547, -0.019765907898545265, 100.20800018310547], [0.05579895153641701, 1.6990909576416016, -1.0535541772842407, -60.349544525146484], @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 472], + "dcmmeta_shape": [104, 104, 60, 482], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259162, + "ImagingFrequency": 123.259148, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e02a", + "ProtocolName": "func_task-s01e01a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03618487467393, + "SAR": 0.03618802085576, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,9 +135,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e02a", - "SeriesNumber": 14, - "SeriesTime": "134618.936000", + "SeriesDescription": "func_task-s01e01a", + "SeriesNumber": 10, + "SeriesTime": "132137.082000", "SliceLocation": -60.596785926142, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -154,14 +154,14 @@ }, "time": { "samples": { - "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 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a/sub-02/ses-001/func/sub-02_ses-001_task-s01e02a_bold.nii.gz b/sub-02/ses-001/func/sub-02_ses-001_task-s01e02a_bold.nii.gz index c75a70fbfa6..28f1d9ba7cb 120000 --- a/sub-02/ses-001/func/sub-02_ses-001_task-s01e02a_bold.nii.gz +++ b/sub-02/ses-001/func/sub-02_ses-001_task-s01e02a_bold.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/3M/JZ/SHA256E-s522391169--26b8d69ca494fa0f4908e3e036da3aa7c962b615de3decd933ab3127f4c0ee60.nii.gz/SHA256E-s522391169--26b8d69ca494fa0f4908e3e036da3aa7c962b615de3decd933ab3127f4c0ee60.nii.gz \ No newline at end of file +../../../.git/annex/objects/x1/k4/SHA256E-s532038385--05f39f2f2c30e9e9b8622d919428da2394a4258f401c2ff1bada8d6e6def9b3f.nii.gz/SHA256E-s532038385--05f39f2f2c30e9e9b8622d919428da2394a4258f401c2ff1bada8d6e6def9b3f.nii.gz \ No newline at end of file diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e06a_bold__dup-01.json b/sub-02/ses-001/func/sub-02_ses-001_task-s01e02a_bold__dup-01.json similarity index 100% rename from sub-02/ses-001/func/sub-02_ses-001_task-s01e06a_bold__dup-01.json rename to sub-02/ses-001/func/sub-02_ses-001_task-s01e02a_bold__dup-01.json diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e06a_bold__dup-01.nii.gz b/sub-02/ses-001/func/sub-02_ses-001_task-s01e02a_bold__dup-01.nii.gz similarity index 100% rename from sub-02/ses-001/func/sub-02_ses-001_task-s01e06a_bold__dup-01.nii.gz rename to sub-02/ses-001/func/sub-02_ses-001_task-s01e02a_bold__dup-01.nii.gz diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e02a_sbref.json b/sub-02/ses-001/func/sub-02_ses-001_task-s01e02a_sbref.json index 5be75c95f9e..e4afc081860 100644 --- a/sub-02/ses-001/func/sub-02_ses-001_task-s01e02a_sbref.json +++ b/sub-02/ses-001/func/sub-02_ses-001_task-s01e02a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "13:45:1.040000", + "AcquisitionTime": "13:19:59.552500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e02a_SBRef", + "ProtocolName": "func_task-s01e01a_SBRef", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0361849, + "SAR": 0.036188, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e02a_SBRef", - "SeriesNumber": 13, + "SeriesDescription": "func_task-s01e01a_SBRef", + "SeriesNumber": 9, "ShimSetting": [623, -7179, -8880, 411, -32, -157, 40, -32], "SliceThickness": 2, - "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.08, 1.1775, 1.275, 1.3725, 1.47, 1.57, 1.6675, 1.765, 1.8625, 1.96, 2.06, 2.1575, 2.255, 2.3525, 2.45, 2.55, 2.6475, 2.745, 2.8425, 2.94, 3.04, 3.1375, 3.235, 3.3325, 3.43, 3.53, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825], + "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.4475, 2.5475, 2.645, 2.7425, 2.84, 2.9375, 3.0375, 3.135, 3.2325, 3.33, 3.4275, 3.5275, 3.625, 3.7225, 3.82, 3.9175, 4.0175, 4.115, 4.2125, 4.31, 4.4075, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 250.688, - "WipMemBlock": "db65e698-57c6-49c8-913c-8cf135279b25||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "e2b4d124-2dcd-46f0-bb72-a3b5fce31e6f||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9991893768310547, 0.05339809134602547, -0.019765907898545265, 100.20800018310547], [0.05579895153641701, 1.6990909576416016, -1.0535541772842407, -60.349544525146484], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "134501.040000", + "AcquisitionTime": "131959.552500", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "134618.903000", + "ContentTime": "132137.061000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259162, + "ImagingFrequency": 123.259148, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "134618.903000", + "InstanceCreationTime": "132137.061000", "InstanceNumber": 1, - "LargestImagePixelValue": 64992, + "LargestImagePixelValue": 62598, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e02a_SBRef", + "ProtocolName": "func_task-s01e01a_SBRef", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03618487467393, + "SAR": 0.03618802085576, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e02a_SBRef", - "SeriesNumber": 13, - "SeriesTime": "134618.900000", + "SeriesDescription": "func_task-s01e01a_SBRef", + "SeriesNumber": 9, + "SeriesTime": "132137.058000", "SliceLocation": -60.596785926142, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "130821.945000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 13325.0, + "WindowCenter": 13272.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 28928.0, + "WindowWidth": 28791.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e02a_sbref.nii.gz b/sub-02/ses-001/func/sub-02_ses-001_task-s01e02a_sbref.nii.gz index 6685f3541da..1a45b42db7a 120000 --- a/sub-02/ses-001/func/sub-02_ses-001_task-s01e02a_sbref.nii.gz +++ b/sub-02/ses-001/func/sub-02_ses-001_task-s01e02a_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/kP/qq/SHA256E-s1127668--1335610814d83807eb2677f420f08b298bb3d6af0d8359152446047a63f2212b.nii.gz/SHA256E-s1127668--1335610814d83807eb2677f420f08b298bb3d6af0d8359152446047a63f2212b.nii.gz \ No newline at end of file +../../../.git/annex/objects/Pf/MF/SHA256E-s1124964--1ab8aca179591a530098857ef64b44ac8e44c89c3de1a47e9038e005f8577175.nii.gz/SHA256E-s1124964--1ab8aca179591a530098857ef64b44ac8e44c89c3de1a47e9038e005f8577175.nii.gz \ No newline at end of file diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e06a_sbref__dup-01.json b/sub-02/ses-001/func/sub-02_ses-001_task-s01e02a_sbref__dup-01.json similarity index 100% rename from sub-02/ses-001/func/sub-02_ses-001_task-s01e06a_sbref__dup-01.json rename to sub-02/ses-001/func/sub-02_ses-001_task-s01e02a_sbref__dup-01.json diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e06a_sbref__dup-01.nii.gz b/sub-02/ses-001/func/sub-02_ses-001_task-s01e02a_sbref__dup-01.nii.gz similarity index 100% rename from sub-02/ses-001/func/sub-02_ses-001_task-s01e06a_sbref__dup-01.nii.gz rename to sub-02/ses-001/func/sub-02_ses-001_task-s01e02a_sbref__dup-01.nii.gz diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e02b_bold.json b/sub-02/ses-001/func/sub-02_ses-001_task-s01e02b_bold.json index 0949a3426ca..125ad24014b 100644 --- a/sub-02/ses-001/func/sub-02_ses-001_task-s01e02b_bold.json +++ b/sub-02/ses-001/func/sub-02_ses-001_task-s01e02b_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "13:57:25.725000", + "AcquisitionTime": "13:32:43.845000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -45,29 +45,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e02b", + "ProtocolName": "func_task-s01e01b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0361849, + "SAR": 0.036188, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e02b", - "SeriesNumber": 16, + "SeriesDescription": "func_task-s01e01b", + "SeriesNumber": 12, "ShimSetting": [623, -7179, -8880, 411, -32, -157, 40, -32], "SliceThickness": 2, - "SliceTiming": [0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685], + "SliceTiming": [0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 250.688, - "WipMemBlock": "e4bd7dd7-573e-4a09-b526-0f8d85212be4||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "7a51863f-6a8e-4f83-8579-7c6f0ab15a63||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9991893768310547, 0.05339809134602547, -0.019765907898545265, 100.20800018310547], [0.05579895153641701, 1.6990909576416016, -1.0535541772842407, -60.349544525146484], @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 472], + "dcmmeta_shape": [104, 104, 60, 482], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259174, + "ImagingFrequency": 123.259158, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e02b", + "ProtocolName": "func_task-s01e01b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03618487467393, + "SAR": 0.03618802085576, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,9 +135,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e02b", - "SeriesNumber": 16, - "SeriesTime": "135857.071000", + "SeriesDescription": "func_task-s01e01b", + "SeriesNumber": 12, + "SeriesTime": "133358.886000", "SliceLocation": -60.596785926142, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -154,14 +154,14 @@ }, "time": { "samples": { - "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259, 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272, 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285, 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 302, 303, 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23397.0, 23370.0, 23378.0, 23365.0, 23380.0, 23389.0, 23394.0, 23383.0, 23362.0, 23368.0, 23373.0, 23382.0, 23316.0, 23370.0, 23449.0, 23459.0, 23429.0, 23384.0, 23394.0, 23356.0, 23386.0, 23388.0, 23378.0, 23365.0, 23338.0, 23353.0, 23353.0, 23387.0, 23369.0, 23368.0, 23367.0, 23403.0, 23375.0, 23386.0, 23355.0, 23349.0, 23382.0, 23369.0, 23358.0, 23349.0, 23343.0, 23329.0, 23336.0, 23327.0, 23371.0, 23352.0, 23369.0, 23366.0, 23391.0, 23352.0, 23361.0, 23350.0, 23381.0, 23397.0, 23359.0, 23366.0, 23362.0, 23383.0, 23367.0, 23371.0, 23351.0, 23313.0, 23308.0, 23335.0, 23368.0, 23370.0, 23375.0, 23376.0, 23399.0, 23391.0, 23401.0, 23403.0, 23397.0, 23374.0, 23363.0, 23362.0, 23336.0, 23350.0, 23329.0, 23356.0, 23371.0, 23362.0, 23322.0, 23327.0, 23343.0, 23322.0, 23355.0, 23353.0, 23372.0, 23336.0, 23339.0, 23359.0, 23408.0, 23397.0, 23428.0, 23387.0, 23397.0, 23313.0, 23301.0, 23336.0, 23396.0, 23399.0, 23392.0, 23353.0, 23333.0, 23328.0, 23314.0, 23312.0, 23344.0, 23335.0, 23318.0, 23303.0, 23326.0, 23343.0, 23391.0, 23368.0, 23325.0, 23308.0, 23346.0, 23356.0, 23377.0, 23368.0, 23349.0, 23332.0, 23353.0, 23323.0, 23349.0, 23332.0, 23340.0, 23351.0, 23359.0, 23357.0, 23334.0, 23338.0, 23339.0, 23337.0, 23339.0, 23337.0, 23309.0, 23303.0, 23297.0, 23299.0, 23332.0, 23356.0, 23358.0, 23351.0, 23332.0, 23344.0, 23346.0, 23369.0, 23385.0, 23351.0, 23361.0, 23341.0, 23348.0, 23322.0, 23325.0, 23328.0, 23334.0, 23350.0, 23292.0, 23284.0, 23282.0, 23338.0, 23353.0, 23334.0, 23323.0, 23334.0, 23334.0, 23316.0, 23304.0, 23293.0, 23293.0, 23280.0, 23279.0, 23280.0, 23324.0, 23338.0, 23373.0, 23366.0, 23380.0, 23345.0, 23354.0, 23365.0, 23327.0, 23346.0, 23317.0, 23326.0, 23302.0, 23285.0, 23318.0, 23332.0, 23359.0, 23328.0, 23334.0, 23321.0, 23334.0, 23333.0, 23322.0, 23306.0, 23289.0, 23302.0, 23318.0, 23279.0, 23317.0, 23284.0, 23335.0, 23418.0, 23398.0, 23302.0, 23269.0, 23329.0, 23346.0, 23318.0, 23273.0, 23252.0, 23225.0, 23198.0, 23243.0, 23292.0, 23365.0, 23336.0, 23354.0, 23322.0, 23342.0, 23312.0, 23325.0, 23307.0, 23346.0, 23367.0, 23432.0, 23435.0, 23421.0, 23353.0, 23346.0, 23294.0, 23277.0, 23283.0, 23284.0, 23279.0, 23280.0, 23320.0, 23331.0, 23349.0, 23325.0, 23507.0, 23300.0, 23306.0] }, "slices": {} } diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e02b_bold.nii.gz b/sub-02/ses-001/func/sub-02_ses-001_task-s01e02b_bold.nii.gz index 611cc04659c..bde952a6fc2 120000 --- a/sub-02/ses-001/func/sub-02_ses-001_task-s01e02b_bold.nii.gz +++ b/sub-02/ses-001/func/sub-02_ses-001_task-s01e02b_bold.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/k0/MQ/SHA256E-s522607749--e97aa563ad885801aa819d95a14e786a27186eac5138ffa587c11999530427cc.nii.gz/SHA256E-s522607749--e97aa563ad885801aa819d95a14e786a27186eac5138ffa587c11999530427cc.nii.gz \ No newline at end of file +../../../.git/annex/objects/66/zM/SHA256E-s532793639--0a7fa249555b6b470728859d1e7c54fa38e0a233d02ca0db1f74a66a8a7641ca.nii.gz/SHA256E-s532793639--0a7fa249555b6b470728859d1e7c54fa38e0a233d02ca0db1f74a66a8a7641ca.nii.gz \ No newline at end of file diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e02b_sbref.json b/sub-02/ses-001/func/sub-02_ses-001_task-s01e02b_sbref.json index 201ffa6ace0..226f4430921 100644 --- a/sub-02/ses-001/func/sub-02_ses-001_task-s01e02b_sbref.json +++ b/sub-02/ses-001/func/sub-02_ses-001_task-s01e02b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "13:57:15.295000", + "AcquisitionTime": "13:32:33.415000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e02b_SBRef", + "ProtocolName": "func_task-s01e01b_SBRef", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0361849, + "SAR": 0.036188, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e02b_SBRef", - "SeriesNumber": 15, + "SeriesDescription": "func_task-s01e01b_SBRef", + "SeriesNumber": 11, "ShimSetting": [623, -7179, -8880, 411, -32, -157, 40, -32], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.45, 2.5475, 2.645, 2.7425, 2.84, 2.94, 3.0375, 3.135, 3.2325, 3.33, 3.43, 3.5275, 3.625, 3.7225, 3.82, 3.9175, 4.0175, 4.115, 4.2125, 4.31, 4.4075, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78], + "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 250.688, - "WipMemBlock": "e4bd7dd7-573e-4a09-b526-0f8d85212be4||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "7a51863f-6a8e-4f83-8579-7c6f0ab15a63||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9991893768310547, 0.05339809134602547, -0.019765907898545265, 100.20800018310547], [0.05579895153641701, 1.6990909576416016, -1.0535541772842407, -60.349544525146484], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "135715.295000", + "AcquisitionTime": "133233.415000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "135857.051000", + "ContentTime": "133358.834000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259174, + "ImagingFrequency": 123.259158, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "135857.051000", + "InstanceCreationTime": "133358.834000", "InstanceNumber": 1, - "LargestImagePixelValue": 65215, + "LargestImagePixelValue": 63791, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e02b_SBRef", + "ProtocolName": "func_task-s01e01b_SBRef", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03618487467393, + "SAR": 0.03618802085576, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e02b_SBRef", - "SeriesNumber": 15, - "SeriesTime": "135857.047000", + "SeriesDescription": "func_task-s01e01b_SBRef", + "SeriesNumber": 11, + "SeriesTime": "133358.831000", "SliceLocation": -60.596785926142, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "130821.945000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 13329.0, + "WindowCenter": 13415.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 28938.0, + "WindowWidth": 29205.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e02b_sbref.nii.gz b/sub-02/ses-001/func/sub-02_ses-001_task-s01e02b_sbref.nii.gz index 740fb4a4dda..f15a3e01fee 120000 --- a/sub-02/ses-001/func/sub-02_ses-001_task-s01e02b_sbref.nii.gz +++ b/sub-02/ses-001/func/sub-02_ses-001_task-s01e02b_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/MW/12/SHA256E-s1128195--77fd319485c16e3ae25750a3b5a745305fc337cd248b1714f741000733427e5c.nii.gz/SHA256E-s1128195--77fd319485c16e3ae25750a3b5a745305fc337cd248b1714f741000733427e5c.nii.gz \ No newline at end of file +../../../.git/annex/objects/6F/pP/SHA256E-s1126657--60afa0f7d567a9d23ffeccea3cb4ba282d509320636a266a2028eabd0d681bce.nii.gz/SHA256E-s1126657--60afa0f7d567a9d23ffeccea3cb4ba282d509320636a266a2028eabd0d681bce.nii.gz \ No newline at end of file diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e03a_bold.json b/sub-02/ses-001/func/sub-02_ses-001_task-s01e03a_bold.json index 41a3c10a227..26f184244ea 100644 --- a/sub-02/ses-001/func/sub-02_ses-001_task-s01e03a_bold.json +++ b/sub-02/ses-001/func/sub-02_ses-001_task-s01e03a_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "14:09:49.472500", + "AcquisitionTime": "13:45:11.470000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -45,29 +45,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e03a", + "ProtocolName": "func_task-s01e02a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0361942, + "SAR": 0.0361849, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e03a", - "SeriesNumber": 18, + "SeriesDescription": "func_task-s01e02a", + "SeriesNumber": 14, "ShimSetting": [623, -7179, -8880, 411, -32, -157, 40, -32], "SliceThickness": 2, - "SliceTiming": [0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685], + "SliceTiming": [0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 250.688, - "WipMemBlock": "36654871-948e-4970-8cfa-9ec73d60efcb||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "db65e698-57c6-49c8-913c-8cf135279b25||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9991893768310547, 0.05339809134602547, -0.019765907898545265, 100.20800018310547], [0.05579895153641701, 1.6990909576416016, -1.0535541772842407, -60.349544525146484], @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 503], + "dcmmeta_shape": [104, 104, 60, 472], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259179, + "ImagingFrequency": 123.259162, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e03a", + "ProtocolName": "func_task-s01e02a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03619422095103, + "SAR": 0.03618487467393, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,9 +135,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e03a", - "SeriesNumber": 18, - "SeriesTime": "141118.861000", + "SeriesDescription": "func_task-s01e02a", + "SeriesNumber": 14, + "SeriesTime": "134618.936000", "SliceLocation": -60.596785926142, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -154,14 +154,14 @@ }, "time": { "samples": { - "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 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23368.0, 23282.0, 23343.0, 23403.0, 23393.0, 23255.0, 23085.0, 23047.0, 23226.0, 23314.0, 23273.0, 23121.0, 23117.0, 23071.0, 23272.0, 23320.0] }, "slices": {} } diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e03a_bold.nii.gz b/sub-02/ses-001/func/sub-02_ses-001_task-s01e03a_bold.nii.gz index 73232fd80fc..c75a70fbfa6 120000 --- a/sub-02/ses-001/func/sub-02_ses-001_task-s01e03a_bold.nii.gz +++ b/sub-02/ses-001/func/sub-02_ses-001_task-s01e03a_bold.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/p8/vX/SHA256E-s557194230--02c4e590a4a2ca598d29c400817c26227930b9d8fbd4ff47d4f7a9cd72416392.nii.gz/SHA256E-s557194230--02c4e590a4a2ca598d29c400817c26227930b9d8fbd4ff47d4f7a9cd72416392.nii.gz \ No newline at end of file +../../../.git/annex/objects/3M/JZ/SHA256E-s522391169--26b8d69ca494fa0f4908e3e036da3aa7c962b615de3decd933ab3127f4c0ee60.nii.gz/SHA256E-s522391169--26b8d69ca494fa0f4908e3e036da3aa7c962b615de3decd933ab3127f4c0ee60.nii.gz \ No newline at end of file diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e03a_sbref.json b/sub-02/ses-001/func/sub-02_ses-001_task-s01e03a_sbref.json index d10fbe2c174..5be75c95f9e 100644 --- a/sub-02/ses-001/func/sub-02_ses-001_task-s01e03a_sbref.json +++ b/sub-02/ses-001/func/sub-02_ses-001_task-s01e03a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "14:09:39.042500", + "AcquisitionTime": "13:45:1.040000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e03a_SBRef", + "ProtocolName": "func_task-s01e02a_SBRef", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0361942, + "SAR": 0.0361849, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e03a_SBRef", - "SeriesNumber": 17, + "SeriesDescription": "func_task-s01e02a_SBRef", + "SeriesNumber": 13, "ShimSetting": [623, -7179, -8880, 411, -32, -157, 40, -32], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.3925, 0.49, 0.5875, 0.685, 0.7825, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.3125, 4.41, 4.5075, 4.605, 4.7025, 4.8, 4.9, 4.9975, 5.095, 5.1925, 5.29, 5.39, 5.4875, 5.585, 5.6825, 5.78], + "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.08, 1.1775, 1.275, 1.3725, 1.47, 1.57, 1.6675, 1.765, 1.8625, 1.96, 2.06, 2.1575, 2.255, 2.3525, 2.45, 2.55, 2.6475, 2.745, 2.8425, 2.94, 3.04, 3.1375, 3.235, 3.3325, 3.43, 3.53, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 250.688, - "WipMemBlock": "36654871-948e-4970-8cfa-9ec73d60efcb||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "db65e698-57c6-49c8-913c-8cf135279b25||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9991893768310547, 0.05339809134602547, -0.019765907898545265, 100.20800018310547], [0.05579895153641701, 1.6990909576416016, -1.0535541772842407, -60.349544525146484], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "140939.042500", + "AcquisitionTime": "134501.040000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "141118.833000", + "ContentTime": "134618.903000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259179, + "ImagingFrequency": 123.259162, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "141118.833000", + "InstanceCreationTime": "134618.903000", "InstanceNumber": 1, - "LargestImagePixelValue": 63190, + "LargestImagePixelValue": 64992, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e03a_SBRef", + "ProtocolName": "func_task-s01e02a_SBRef", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03619422095103, + "SAR": 0.03618487467393, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e03a_SBRef", - "SeriesNumber": 17, - "SeriesTime": "141118.830000", + "SeriesDescription": "func_task-s01e02a_SBRef", + "SeriesNumber": 13, + "SeriesTime": "134618.900000", "SliceLocation": -60.596785926142, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "130821.945000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 13285.0, + "WindowCenter": 13325.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 28796.0, + "WindowWidth": 28928.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e03a_sbref.nii.gz b/sub-02/ses-001/func/sub-02_ses-001_task-s01e03a_sbref.nii.gz index 20e3b4369cc..6685f3541da 120000 --- a/sub-02/ses-001/func/sub-02_ses-001_task-s01e03a_sbref.nii.gz +++ b/sub-02/ses-001/func/sub-02_ses-001_task-s01e03a_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/6F/qM/SHA256E-s1128815--df937474d6b329f2f4e1c78a27ec394451761e4091dcd7e6fff8de0ac8305e47.nii.gz/SHA256E-s1128815--df937474d6b329f2f4e1c78a27ec394451761e4091dcd7e6fff8de0ac8305e47.nii.gz \ No newline at end of file +../../../.git/annex/objects/kP/qq/SHA256E-s1127668--1335610814d83807eb2677f420f08b298bb3d6af0d8359152446047a63f2212b.nii.gz/SHA256E-s1127668--1335610814d83807eb2677f420f08b298bb3d6af0d8359152446047a63f2212b.nii.gz \ No newline at end of file diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e03b_bold.json b/sub-02/ses-001/func/sub-02_ses-001_task-s01e03b_bold.json index 1e2d89eca00..0949a3426ca 100644 --- a/sub-02/ses-001/func/sub-02_ses-001_task-s01e03b_bold.json +++ b/sub-02/ses-001/func/sub-02_ses-001_task-s01e03b_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "14:22:50.085000", + "AcquisitionTime": "13:57:25.725000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -45,19 +45,19 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e03b", + "ProtocolName": "func_task-s01e02b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0361942, + "SAR": 0.0361849, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e03b", - "SeriesNumber": 20, + "SeriesDescription": "func_task-s01e02b", + "SeriesNumber": 16, "ShimSetting": [623, -7179, -8880, 411, -32, -157, 40, -32], "SliceThickness": 2, "SliceTiming": [0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685], @@ -67,7 +67,7 @@ "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 250.688, - "WipMemBlock": "6260d02d-7f15-413f-8e79-bbcb2e48db0f||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "e4bd7dd7-573e-4a09-b526-0f8d85212be4||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9991893768310547, 0.05339809134602547, -0.019765907898545265, 100.20800018310547], [0.05579895153641701, 1.6990909576416016, -1.0535541772842407, -60.349544525146484], @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 503], + "dcmmeta_shape": [104, 104, 60, 472], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259177, + "ImagingFrequency": 123.259174, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e03b", + "ProtocolName": "func_task-s01e02b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03619422095103, + "SAR": 0.03618487467393, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,9 +135,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e03b", - "SeriesNumber": 20, - "SeriesTime": "142418.941000", + "SeriesDescription": "func_task-s01e02b", + "SeriesNumber": 16, + "SeriesTime": "135857.071000", "SliceLocation": -60.596785926142, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -154,14 +154,14 @@ }, "time": { "samples": { - "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 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23140.0, 23166.0, 23136.0, 23128.0, 23133.0, 23211.0, 23266.0, 23217.0, 23137.0, 23141.0, 23146.0, 23187.0, 23160.0, 23125.0, 23074.0, 23078.0, 23060.0, 23107.0, 23122.0, 23117.0, 23137.0, 23180.0, 23190.0, 23201.0, 23202.0, 23152.0, 23145.0, 23150.0, 23172.0, 23209.0, 23162.0, 23123.0, 23097.0, 23085.0, 23071.0, 23085.0, 23270.0, 23161.0, 23225.0, 23254.0] }, "slices": {} } diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e03b_bold.nii.gz b/sub-02/ses-001/func/sub-02_ses-001_task-s01e03b_bold.nii.gz index 625a05d4902..611cc04659c 120000 --- a/sub-02/ses-001/func/sub-02_ses-001_task-s01e03b_bold.nii.gz +++ b/sub-02/ses-001/func/sub-02_ses-001_task-s01e03b_bold.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/Wp/V0/SHA256E-s557777604--889c08d68ebbbfa89c6a530b79924c3865fb0746338a3a6ce285508f1caff9ac.nii.gz/SHA256E-s557777604--889c08d68ebbbfa89c6a530b79924c3865fb0746338a3a6ce285508f1caff9ac.nii.gz \ No newline at end of file +../../../.git/annex/objects/k0/MQ/SHA256E-s522607749--e97aa563ad885801aa819d95a14e786a27186eac5138ffa587c11999530427cc.nii.gz/SHA256E-s522607749--e97aa563ad885801aa819d95a14e786a27186eac5138ffa587c11999530427cc.nii.gz \ No newline at end of file diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e03b_sbref.json b/sub-02/ses-001/func/sub-02_ses-001_task-s01e03b_sbref.json index 4d112ffb6c2..201ffa6ace0 100644 --- a/sub-02/ses-001/func/sub-02_ses-001_task-s01e03b_sbref.json +++ b/sub-02/ses-001/func/sub-02_ses-001_task-s01e03b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "14:22:39.655000", + "AcquisitionTime": "13:57:15.295000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e03b_SBRef", + "ProtocolName": "func_task-s01e02b_SBRef", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0361942, + "SAR": 0.0361849, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e03b_SBRef", - "SeriesNumber": 19, + "SeriesDescription": "func_task-s01e02b_SBRef", + "SeriesNumber": 15, "ShimSetting": [623, -7179, -8880, 411, -32, -157, 40, -32], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.45, 2.5475, 2.645, 2.7425, 2.84, 2.94, 3.0375, 3.135, 3.2325, 3.33, 3.4275, 3.5275, 3.625, 3.7225, 3.82, 3.9175, 4.0175, 4.115, 4.2125, 4.31, 4.4075, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78], + "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.45, 2.5475, 2.645, 2.7425, 2.84, 2.94, 3.0375, 3.135, 3.2325, 3.33, 3.43, 3.5275, 3.625, 3.7225, 3.82, 3.9175, 4.0175, 4.115, 4.2125, 4.31, 4.4075, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 250.688, - "WipMemBlock": "6260d02d-7f15-413f-8e79-bbcb2e48db0f||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "e4bd7dd7-573e-4a09-b526-0f8d85212be4||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9991893768310547, 0.05339809134602547, -0.019765907898545265, 100.20800018310547], [0.05579895153641701, 1.6990909576416016, -1.0535541772842407, -60.349544525146484], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "142239.655000", + "AcquisitionTime": "135715.295000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "142418.903000", + "ContentTime": "135857.051000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259177, + "ImagingFrequency": 123.259174, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "142418.903000", + "InstanceCreationTime": "135857.051000", "InstanceNumber": 1, - "LargestImagePixelValue": 62077, + "LargestImagePixelValue": 65215, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e03b_SBRef", + "ProtocolName": "func_task-s01e02b_SBRef", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03619422095103, + "SAR": 0.03618487467393, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e03b_SBRef", - "SeriesNumber": 19, - "SeriesTime": "142418.900000", + "SeriesDescription": "func_task-s01e02b_SBRef", + "SeriesNumber": 15, + "SeriesTime": "135857.047000", "SliceLocation": -60.596785926142, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "130821.945000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 13293.0, + "WindowCenter": 13329.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 28814.0, + "WindowWidth": 28938.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e03b_sbref.nii.gz b/sub-02/ses-001/func/sub-02_ses-001_task-s01e03b_sbref.nii.gz index 6e3cc242697..740fb4a4dda 120000 --- a/sub-02/ses-001/func/sub-02_ses-001_task-s01e03b_sbref.nii.gz +++ b/sub-02/ses-001/func/sub-02_ses-001_task-s01e03b_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/2W/9w/SHA256E-s1129214--5c9de4e449fd109a65fac478f99d16a4e6188333f9ccdbfa3f4fac05b8cdc5e0.nii.gz/SHA256E-s1129214--5c9de4e449fd109a65fac478f99d16a4e6188333f9ccdbfa3f4fac05b8cdc5e0.nii.gz \ No newline at end of file +../../../.git/annex/objects/MW/12/SHA256E-s1128195--77fd319485c16e3ae25750a3b5a745305fc337cd248b1714f741000733427e5c.nii.gz/SHA256E-s1128195--77fd319485c16e3ae25750a3b5a745305fc337cd248b1714f741000733427e5c.nii.gz \ No newline at end of file diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e04a_bold.json b/sub-02/ses-001/func/sub-02_ses-001_task-s01e04a_bold.json new file mode 100644 index 00000000000..41a3c10a227 --- /dev/null +++ b/sub-02/ses-001/func/sub-02_ses-001_task-s01e04a_bold.json @@ -0,0 +1,168 @@ +{ + "AcquisitionMatrixPE": 104, + "AcquisitionNumber": 1, + "AcquisitionTime": "14:09:49.472500", + "BandwidthPerPixelPhaseEncode": 17.17, + "BaseResolution": 104, + "BodyPartExamined": "BRAIN", + "CoilString": "HC1-7;NC1_2", + "ConsistencyInfo": "N4_VE11C_LATEST_20160120", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", + "DerivedVendorReportedEchoSpacing": 0.000560011, + "DeviceSerialNumber": "167006", + "DwellTime": 2.1e-06, + "EchoTime": 0.037, + "EchoTrainLength": 104, + "EffectiveEchoSpacing": 0.000560011, + "FlipAngle": 52, + "ImageComments": "Unaliased_MB4_PE3_LB", + "ImageOrientationPatientDICOM": [0.999595, -0.0278995, 0.00566843, 0.026699, 0.849545, -0.526839], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagingFrequency": 123.259, + "InPlanePhaseEncodingDirectionDICOM": "COL", + "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", + "InstitutionName": "IUGM", + "InstitutionalDepartmentName": "Department", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma_fit", + "Modality": "MR", + "MultibandAccelerationFactor": 4, + "PartialFourier": 1, + "PatientPosition": "HFS", + "PercentPhaseFOV": 100, + "PhaseEncodingDirection": "j", + "PhaseEncodingSteps": 104, + "PhaseResolution": 1, + "PixelBandwidth": 2290, + "ProcedureStepDescription": "video_friends", + "ProtocolName": "func_task-s01e03a", + "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", + "ReceiveCoilActiveElements": "HC1-7;NC1,2", + "ReceiveCoilName": "HeadNeck_64", + "ReconMatrixPE": 104, + "RepetitionTime": 1.49, + "SAR": 0.0361942, + "ScanOptions": "FS", + "ScanningSequence": "EP", + "SequenceName": "epfid2d1_104", + "SequenceVariant": "SK_SS", + "SeriesDescription": "func_task-s01e03a", + "SeriesNumber": 18, + "ShimSetting": [623, -7179, -8880, 411, -32, -157, 40, -32], + "SliceThickness": 2, + "SliceTiming": [0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685], + "SoftwareVersions": "syngo_MR_E11", + "SpacingBetweenSlices": 2, + "StationName": "MRC35049", + "TaskName": "friends", + "TotalReadoutTime": 0.0576811, + "TxRefAmp": 250.688, + "WipMemBlock": "36654871-948e-4970-8cfa-9ec73d60efcb||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "dcmmeta_affine": [ + [-1.9991893768310547, 0.05339809134602547, -0.019765907898545265, 100.20800018310547], + [0.05579895153641701, 1.6990909576416016, -1.0535541772842407, -60.349544525146484], + [0.011336853727698326, 1.0536786317825317, 1.6998920440673828, -107.53294372558594], + [0.0, 0.0, 0.0, 1.0] +], + "dcmmeta_reorient_transform": [ + [0.0, -1.0, 0.0, 103.0], + [1.0, 0.0, 0.0, 0.0], + [0.0, 0.0, 1.0, 0.0], + [0.0, 0.0, 0.0, 1.0] +], + "dcmmeta_shape": [104, 104, 60, 503], + "dcmmeta_slice_dim": 2, + "dcmmeta_version": 0.6, + "global": { + "const": { + "AcquisitionMatrix": [104, 0, 0, 104], + "AngioFlag": "N", + "BitsAllocated": 16, + "BitsStored": 16, + "BodyPartExamined": "BRAIN", + "Columns": 832, + "EchoNumbers": 1, + "EchoTime": 37.0, + "EchoTrainLength": 104, + "FlipAngle": 52.0, + "HighBit": 15, + "ImageOrientationPatient": [0.99959466192526, -0.0278994764344, 0.00566842704972, 0.02669904614871, 0.84954547054641, -0.5268393060591], + "ImagePositionPatient": [-852.84982233476, -712.81510598673, 380.40835697423], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagedNucleus": "1H", + "ImagingFrequency": 123.259179, + "InPlanePhaseEncodingDirection": 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b/sub-02/ses-001/func/sub-02_ses-001_task-s01e04a_bold.nii.gz new file mode 120000 index 00000000000..73232fd80fc --- /dev/null +++ b/sub-02/ses-001/func/sub-02_ses-001_task-s01e04a_bold.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/p8/vX/SHA256E-s557194230--02c4e590a4a2ca598d29c400817c26227930b9d8fbd4ff47d4f7a9cd72416392.nii.gz/SHA256E-s557194230--02c4e590a4a2ca598d29c400817c26227930b9d8fbd4ff47d4f7a9cd72416392.nii.gz \ No newline at end of file diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e06b_sbref.json b/sub-02/ses-001/func/sub-02_ses-001_task-s01e04a_sbref.json similarity index 79% rename from sub-02/ses-001/func/sub-02_ses-001_task-s01e06b_sbref.json rename to sub-02/ses-001/func/sub-02_ses-001_task-s01e04a_sbref.json index 226f4430921..d10fbe2c174 100644 --- a/sub-02/ses-001/func/sub-02_ses-001_task-s01e06b_sbref.json +++ b/sub-02/ses-001/func/sub-02_ses-001_task-s01e04a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "13:32:33.415000", + "AcquisitionTime": "14:09:39.042500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e01b_SBRef", + "ProtocolName": "func_task-s01e03a_SBRef", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.036188, + "SAR": 0.0361942, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e01b_SBRef", - "SeriesNumber": 11, + "SeriesDescription": "func_task-s01e03a_SBRef", + "SeriesNumber": 17, "ShimSetting": [623, -7179, -8880, 411, -32, -157, 40, -32], "SliceThickness": 2, - "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825], + "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.3925, 0.49, 0.5875, 0.685, 0.7825, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.3125, 4.41, 4.5075, 4.605, 4.7025, 4.8, 4.9, 4.9975, 5.095, 5.1925, 5.29, 5.39, 5.4875, 5.585, 5.6825, 5.78], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 250.688, - "WipMemBlock": "7a51863f-6a8e-4f83-8579-7c6f0ab15a63||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "36654871-948e-4970-8cfa-9ec73d60efcb||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9991893768310547, 0.05339809134602547, -0.019765907898545265, 100.20800018310547], [0.05579895153641701, 1.6990909576416016, -1.0535541772842407, -60.349544525146484], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "133233.415000", + "AcquisitionTime": "140939.042500", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "133358.834000", + "ContentTime": "141118.833000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259158, + "ImagingFrequency": 123.259179, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "133358.834000", + "InstanceCreationTime": "141118.833000", "InstanceNumber": 1, - "LargestImagePixelValue": 63791, + "LargestImagePixelValue": 63190, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e01b_SBRef", + "ProtocolName": "func_task-s01e03a_SBRef", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03618802085576, + "SAR": 0.03619422095103, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e01b_SBRef", - "SeriesNumber": 11, - "SeriesTime": "133358.831000", + "SeriesDescription": "func_task-s01e03a_SBRef", + "SeriesNumber": 17, + "SeriesTime": "141118.830000", "SliceLocation": -60.596785926142, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "130821.945000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 13415.0, + "WindowCenter": 13285.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 29205.0, + "WindowWidth": 28796.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e04a_sbref.nii.gz b/sub-02/ses-001/func/sub-02_ses-001_task-s01e04a_sbref.nii.gz new file mode 120000 index 00000000000..20e3b4369cc --- /dev/null +++ b/sub-02/ses-001/func/sub-02_ses-001_task-s01e04a_sbref.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/6F/qM/SHA256E-s1128815--df937474d6b329f2f4e1c78a27ec394451761e4091dcd7e6fff8de0ac8305e47.nii.gz/SHA256E-s1128815--df937474d6b329f2f4e1c78a27ec394451761e4091dcd7e6fff8de0ac8305e47.nii.gz \ No newline at end of file diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e04b_bold.json b/sub-02/ses-001/func/sub-02_ses-001_task-s01e04b_bold.json new file mode 100644 index 00000000000..1e2d89eca00 --- /dev/null +++ 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a/sub-02/ses-001/func/sub-02_ses-001_task-s01e04b_bold.nii.gz b/sub-02/ses-001/func/sub-02_ses-001_task-s01e04b_bold.nii.gz new file mode 120000 index 00000000000..625a05d4902 --- /dev/null +++ b/sub-02/ses-001/func/sub-02_ses-001_task-s01e04b_bold.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/Wp/V0/SHA256E-s557777604--889c08d68ebbbfa89c6a530b79924c3865fb0746338a3a6ce285508f1caff9ac.nii.gz/SHA256E-s557777604--889c08d68ebbbfa89c6a530b79924c3865fb0746338a3a6ce285508f1caff9ac.nii.gz \ No newline at end of file diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e06a_sbref.json b/sub-02/ses-001/func/sub-02_ses-001_task-s01e04b_sbref.json similarity index 83% rename from sub-02/ses-001/func/sub-02_ses-001_task-s01e06a_sbref.json rename to sub-02/ses-001/func/sub-02_ses-001_task-s01e04b_sbref.json index e4afc081860..4d112ffb6c2 100644 --- a/sub-02/ses-001/func/sub-02_ses-001_task-s01e06a_sbref.json +++ b/sub-02/ses-001/func/sub-02_ses-001_task-s01e04b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "13:19:59.552500", + "AcquisitionTime": "14:22:39.655000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e01a_SBRef", + "ProtocolName": "func_task-s01e03b_SBRef", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.036188, + "SAR": 0.0361942, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e01a_SBRef", - "SeriesNumber": 9, + "SeriesDescription": "func_task-s01e03b_SBRef", + "SeriesNumber": 19, "ShimSetting": [623, -7179, -8880, 411, -32, -157, 40, -32], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.4475, 2.5475, 2.645, 2.7425, 2.84, 2.9375, 3.0375, 3.135, 3.2325, 3.33, 3.4275, 3.5275, 3.625, 3.7225, 3.82, 3.9175, 4.0175, 4.115, 4.2125, 4.31, 4.4075, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78], + "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.45, 2.5475, 2.645, 2.7425, 2.84, 2.94, 3.0375, 3.135, 3.2325, 3.33, 3.4275, 3.5275, 3.625, 3.7225, 3.82, 3.9175, 4.0175, 4.115, 4.2125, 4.31, 4.4075, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 250.688, - "WipMemBlock": "e2b4d124-2dcd-46f0-bb72-a3b5fce31e6f||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "6260d02d-7f15-413f-8e79-bbcb2e48db0f||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9991893768310547, 0.05339809134602547, -0.019765907898545265, 100.20800018310547], [0.05579895153641701, 1.6990909576416016, -1.0535541772842407, -60.349544525146484], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "131959.552500", + "AcquisitionTime": "142239.655000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "132137.061000", + "ContentTime": "142418.903000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259148, + "ImagingFrequency": 123.259177, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "132137.061000", + "InstanceCreationTime": "142418.903000", "InstanceNumber": 1, - "LargestImagePixelValue": 62598, + "LargestImagePixelValue": 62077, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e01a_SBRef", + "ProtocolName": "func_task-s01e03b_SBRef", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03618802085576, + "SAR": 0.03619422095103, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e01a_SBRef", - "SeriesNumber": 9, - "SeriesTime": "132137.058000", + "SeriesDescription": "func_task-s01e03b_SBRef", + "SeriesNumber": 19, + "SeriesTime": "142418.900000", "SliceLocation": -60.596785926142, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "130821.945000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 13272.0, + "WindowCenter": 13293.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 28791.0, + "WindowWidth": 28814.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e04b_sbref.nii.gz b/sub-02/ses-001/func/sub-02_ses-001_task-s01e04b_sbref.nii.gz new file mode 120000 index 00000000000..6e3cc242697 --- /dev/null +++ b/sub-02/ses-001/func/sub-02_ses-001_task-s01e04b_sbref.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/2W/9w/SHA256E-s1129214--5c9de4e449fd109a65fac478f99d16a4e6188333f9ccdbfa3f4fac05b8cdc5e0.nii.gz/SHA256E-s1129214--5c9de4e449fd109a65fac478f99d16a4e6188333f9ccdbfa3f4fac05b8cdc5e0.nii.gz \ No newline at end of file diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e06a_bold.json b/sub-02/ses-001/func/sub-02_ses-001_task-s01e06a_bold.json deleted file mode 100644 index 5c30c27fc09..00000000000 --- a/sub-02/ses-001/func/sub-02_ses-001_task-s01e06a_bold.json +++ /dev/null @@ -1,168 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "13:20:9.982500", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": "167006", - "DwellTime": 2.1e-06, - "EchoTime": 0.037, - "EchoTrainLength": 104, - "EffectiveEchoSpacing": 0.000560011, - "FlipAngle": 52, - "ImageComments": "Unaliased_MB4_PE3_LB", - "ImageOrientationPatientDICOM": [0.999595, -0.0278995, 0.00566843, 0.026699, 0.849545, -0.526839], - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "MB", - "ND", - "MOSAIC" -], - "ImagingFrequency": 123.259, - 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-1 +0,0 @@ -../../../.git/annex/objects/Pf/MF/SHA256E-s1124964--1ab8aca179591a530098857ef64b44ac8e44c89c3de1a47e9038e005f8577175.nii.gz/SHA256E-s1124964--1ab8aca179591a530098857ef64b44ac8e44c89c3de1a47e9038e005f8577175.nii.gz \ No newline at end of file diff --git a/sub-02/ses-001/func/sub-02_ses-001_task-s01e06b_bold.json b/sub-02/ses-001/func/sub-02_ses-001_task-s01e06b_bold.json deleted file mode 100644 index 125ad24014b..00000000000 --- a/sub-02/ses-001/func/sub-02_ses-001_task-s01e06b_bold.json +++ /dev/null @@ -1,168 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "13:32:43.845000", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": 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a/sub-02/ses-002/func/sub-02_ses-002_task-s01e04a_bold.nii.gz b/sub-02/ses-002/func/sub-02_ses-002_task-s01e04a_bold.nii.gz deleted file mode 120000 index bed3dfd2940..00000000000 --- a/sub-02/ses-002/func/sub-02_ses-002_task-s01e04a_bold.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/4k/88/SHA256E-s516122129--40551aed340b5b12746aaa7bd4f6ade94fbb931faf4ff95d5dab4328b20c4bee.nii.gz/SHA256E-s516122129--40551aed340b5b12746aaa7bd4f6ade94fbb931faf4ff95d5dab4328b20c4bee.nii.gz \ No newline at end of file diff --git a/sub-02/ses-002/func/sub-02_ses-002_task-s01e04a_sbref.nii.gz b/sub-02/ses-002/func/sub-02_ses-002_task-s01e04a_sbref.nii.gz deleted file mode 120000 index dea3c1364b6..00000000000 --- a/sub-02/ses-002/func/sub-02_ses-002_task-s01e04a_sbref.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/jZ/zp/SHA256E-s1125851--d529a358c6141051a4f2a6aea514f589df7debb37b2cdf1a2dceb9cd7908976b.nii.gz/SHA256E-s1125851--d529a358c6141051a4f2a6aea514f589df7debb37b2cdf1a2dceb9cd7908976b.nii.gz \ No newline at end of file diff --git a/sub-02/ses-002/func/sub-02_ses-002_task-s01e04b_bold.json b/sub-02/ses-002/func/sub-02_ses-002_task-s01e04b_bold.json deleted file mode 100644 index 94abb34718f..00000000000 --- a/sub-02/ses-002/func/sub-02_ses-002_task-s01e04b_bold.json +++ /dev/null @@ -1,168 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "10:48:40.152500", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": "167006", - 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22991.0, 23002.0, 22986.0, 22975.0, 22912.0, 22877.0, 22904.0, 22954.0, 22960.0, 23012.0, 22965.0, 22984.0, 22903.0, 22930.0, 22896.0, 22908.0, 22976.0, 23011.0, 22987.0, 22999.0, 22919.0, 22964.0, 22889.0, 22900.0, 22869.0, 22858.0, 22887.0, 22946.0, 22965.0, 22995.0, 23052.0, 22935.0, 22947.0, 22886.0] - }, - "slices": {} - } -} \ No newline at end of file diff --git a/sub-02/ses-002/func/sub-02_ses-002_task-s01e04b_bold.nii.gz b/sub-02/ses-002/func/sub-02_ses-002_task-s01e04b_bold.nii.gz deleted file mode 120000 index 42b284aa428..00000000000 --- a/sub-02/ses-002/func/sub-02_ses-002_task-s01e04b_bold.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/W1/58/SHA256E-s516642210--79062408a86f8812c1f6c69debcfe86fb61e816a84a442d0e7d670508a26dc58.nii.gz/SHA256E-s516642210--79062408a86f8812c1f6c69debcfe86fb61e816a84a442d0e7d670508a26dc58.nii.gz \ No newline at end of file diff --git a/sub-02/ses-002/func/sub-02_ses-002_task-s01e04b_sbref.nii.gz b/sub-02/ses-002/func/sub-02_ses-002_task-s01e04b_sbref.nii.gz deleted file mode 120000 index 2b81e35adaf..00000000000 --- a/sub-02/ses-002/func/sub-02_ses-002_task-s01e04b_sbref.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/MX/11/SHA256E-s1125997--38fc6beb2871d414e997bd6c59db8cc969d4c60586d5f948a0b4c661ada8d9a1.nii.gz/SHA256E-s1125997--38fc6beb2871d414e997bd6c59db8cc969d4c60586d5f948a0b4c661ada8d9a1.nii.gz \ No newline at end of file diff --git a/sub-02/ses-002/func/sub-02_ses-002_task-s01e05a_bold.json b/sub-02/ses-002/func/sub-02_ses-002_task-s01e05a_bold.json index fddcb70364f..de198f21fab 100644 --- a/sub-02/ses-002/func/sub-02_ses-002_task-s01e05a_bold.json +++ b/sub-02/ses-002/func/sub-02_ses-002_task-s01e05a_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "11:00:49.820000", + "AcquisitionTime": "10:36:30.735000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -45,29 +45,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e05a", + "ProtocolName": "func_task-s01e04a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0362846, + "SAR": 0.0362783, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e05a", - "SeriesNumber": 12, + "SeriesDescription": "func_task-s01e04a", + "SeriesNumber": 8, "ShimSetting": [622, -7196, -8884, 411, -26, -126, 36, -22], "SliceThickness": 2, - "SliceTiming": [0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685], + "SliceTiming": [0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 250.712, - "WipMemBlock": "86ebab73-6500-49b6-8d3b-be44101a40c5||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "e459100c-e8b0-4cf0-a25b-f0e8efdd8d2a||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9979159832000732, 0.08024448901414871, -0.04350166395306587, 99.63345336914062], [0.09121526032686234, 1.7200450897216797, -1.0164273977279663, -63.13176345825195], @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 488], + "dcmmeta_shape": [104, 104, 60, 468], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259194, + "ImagingFrequency": 123.259185, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e05a", + "ProtocolName": "func_task-s01e04a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03628455596771, + "SAR": 0.03627827524863, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,9 +135,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e05a", - "SeriesNumber": 12, - "SeriesTime": "110207.889000", + "SeriesDescription": "func_task-s01e04a", + "SeriesNumber": 8, + "SeriesTime": "103753.922000", "SliceLocation": -60.659941154881, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -154,14 +154,14 @@ }, "time": { "samples": { - "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 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23006.0, 23035.0, 23040.0, 23029.0, 23026.0, 23016.0, 23043.0, 23048.0, 23069.0, 23020.0, 23011.0, 22979.0, 22963.0, 22978.0, 23012.0, 23022.0, 23005.0, 22974.0, 22994.0, 22932.0, 22956.0, 22957.0] }, "slices": {} } diff --git a/sub-02/ses-002/func/sub-02_ses-002_task-s01e05a_bold.nii.gz b/sub-02/ses-002/func/sub-02_ses-002_task-s01e05a_bold.nii.gz index 99f8c4ed93c..bed3dfd2940 120000 --- a/sub-02/ses-002/func/sub-02_ses-002_task-s01e05a_bold.nii.gz +++ b/sub-02/ses-002/func/sub-02_ses-002_task-s01e05a_bold.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/K9/8m/SHA256E-s539293161--96786689b6f8d5a3335cdddd4315a1e061be3fd09bd2af8076b6f1dfcdd8ad56.nii.gz/SHA256E-s539293161--96786689b6f8d5a3335cdddd4315a1e061be3fd09bd2af8076b6f1dfcdd8ad56.nii.gz \ No newline at end of file +../../../.git/annex/objects/4k/88/SHA256E-s516122129--40551aed340b5b12746aaa7bd4f6ade94fbb931faf4ff95d5dab4328b20c4bee.nii.gz/SHA256E-s516122129--40551aed340b5b12746aaa7bd4f6ade94fbb931faf4ff95d5dab4328b20c4bee.nii.gz \ No newline at end of file diff --git a/sub-02/ses-002/func/sub-02_ses-002_task-s01e05a_sbref.json b/sub-02/ses-002/func/sub-02_ses-002_task-s01e05a_sbref.json index 5899994d208..64804de9d9f 100644 --- a/sub-02/ses-002/func/sub-02_ses-002_task-s01e05a_sbref.json +++ b/sub-02/ses-002/func/sub-02_ses-002_task-s01e05a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "11:00:39.390000", + "AcquisitionTime": "10:36:20.305000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e05a", + "ProtocolName": "func_task-s01e04a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0362846, + "SAR": 0.0362783, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e05a_SBRef", - "SeriesNumber": 11, + "SeriesDescription": "func_task-s01e04a_SBRef", + "SeriesNumber": 7, "ShimSetting": [622, -7196, -8884, 411, -26, -126, 36, -22], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.295, 0.3925, 0.49, 0.5875, 0.685, 0.785, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.3125, 4.41, 4.5075, 4.605, 4.7025, 4.8025, 4.9, 4.9975, 5.095, 5.1925, 5.2925, 5.39, 5.4875, 5.585, 5.6825, 5.7825], + "SliceTiming": [0, 0.0975, 0.1975, 0.295, 0.3925, 0.49, 0.5875, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.625, 3.725, 3.8225, 3.92, 4.0175, 4.115, 4.215, 4.3125, 4.41, 4.5075, 4.605, 4.705, 4.8025, 4.9, 4.9975, 5.095, 5.195, 5.2925, 5.39, 5.4875, 5.585, 5.685, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 250.712, - "WipMemBlock": "86ebab73-6500-49b6-8d3b-be44101a40c5||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "e459100c-e8b0-4cf0-a25b-f0e8efdd8d2a||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9979159832000732, 0.08024448901414871, -0.04350166395306587, 99.63345336914062], [0.09121526032686234, 1.7200450897216797, -1.0164273977279663, -63.13176345825195], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "110039.390000", + "AcquisitionTime": "103620.305000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "110207.863000", + "ContentTime": "103753.894000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259194, + "ImagingFrequency": 123.259185, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "110207.863000", + "InstanceCreationTime": "103753.894000", "InstanceNumber": 1, - "LargestImagePixelValue": 62886, + "LargestImagePixelValue": 65535, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e05a", + "ProtocolName": "func_task-s01e04a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03628455596771, + "SAR": 0.03627827524863, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e05a_SBRef", - "SeriesNumber": 11, - "SeriesTime": "110207.860000", + "SeriesDescription": "func_task-s01e04a_SBRef", + "SeriesNumber": 7, + "SeriesTime": "103753.890000", "SliceLocation": -60.659941154881, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "102317.838000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 13193.0, + "WindowCenter": 13288.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 28523.0, + "WindowWidth": 28827.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-02/ses-002/func/sub-02_ses-002_task-s01e05a_sbref.nii.gz b/sub-02/ses-002/func/sub-02_ses-002_task-s01e05a_sbref.nii.gz index a4f8da220d2..dea3c1364b6 120000 --- a/sub-02/ses-002/func/sub-02_ses-002_task-s01e05a_sbref.nii.gz +++ b/sub-02/ses-002/func/sub-02_ses-002_task-s01e05a_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/w6/M4/SHA256E-s1127066--f8bc4a5fb4583b1615f37f39d810106e8e1edb25bcaf4f03275b9e1eb95d35ce.nii.gz/SHA256E-s1127066--f8bc4a5fb4583b1615f37f39d810106e8e1edb25bcaf4f03275b9e1eb95d35ce.nii.gz \ No newline at end of file +../../../.git/annex/objects/jZ/zp/SHA256E-s1125851--d529a358c6141051a4f2a6aea514f589df7debb37b2cdf1a2dceb9cd7908976b.nii.gz/SHA256E-s1125851--d529a358c6141051a4f2a6aea514f589df7debb37b2cdf1a2dceb9cd7908976b.nii.gz \ No newline at end of file diff --git a/sub-02/ses-002/func/sub-02_ses-002_task-s01e05b_bold.json b/sub-02/ses-002/func/sub-02_ses-002_task-s01e05b_bold.json index 2becc17a3a3..94abb34718f 100644 --- a/sub-02/ses-002/func/sub-02_ses-002_task-s01e05b_bold.json +++ b/sub-02/ses-002/func/sub-02_ses-002_task-s01e05b_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "11:13:56.907500", + "AcquisitionTime": "10:48:40.152500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -45,29 +45,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e05b", + "ProtocolName": "func_task-s01e04b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0362846, + "SAR": 0.0362783, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e05b", - "SeriesNumber": 14, + "SeriesDescription": "func_task-s01e04b", + "SeriesNumber": 10, "ShimSetting": [622, -7196, -8884, 411, -26, -126, 36, -22], "SliceThickness": 2, - "SliceTiming": [0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.275, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.275, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.275, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.275, 0.5875, 1.3725, 0.685], + "SliceTiming": [0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 250.712, - "WipMemBlock": "ba90d0a2-84cf-4748-987f-8bca5f4da0fa||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "82c46d3d-d51a-43d9-8d9b-b883b4cbc37a||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9979159832000732, 0.08024448901414871, -0.04350166395306587, 99.63345336914062], [0.09121526032686234, 1.7200450897216797, -1.0164273977279663, -63.13176345825195], @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 488], + "dcmmeta_shape": [104, 104, 60, 468], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259197, + "ImagingFrequency": 123.259193, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e05b", + "ProtocolName": "func_task-s01e04b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03628455596771, + "SAR": 0.03627827524863, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,9 +135,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e05b", - "SeriesNumber": 14, - "SeriesTime": "111513.922000", + "SeriesDescription": "func_task-s01e04b", + "SeriesNumber": 10, + "SeriesTime": "104948.021000", "SliceLocation": -60.659941154881, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -154,14 +154,14 @@ }, "time": { "samples": { - "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 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22903.0, 22930.0, 22896.0, 22908.0, 22976.0, 23011.0, 22987.0, 22999.0, 22919.0, 22964.0, 22889.0, 22900.0, 22869.0, 22858.0, 22887.0, 22946.0, 22965.0, 22995.0, 23052.0, 22935.0, 22947.0, 22886.0] }, "slices": {} } diff --git a/sub-02/ses-002/func/sub-02_ses-002_task-s01e05b_bold.nii.gz b/sub-02/ses-002/func/sub-02_ses-002_task-s01e05b_bold.nii.gz index 703622f2474..42b284aa428 120000 --- a/sub-02/ses-002/func/sub-02_ses-002_task-s01e05b_bold.nii.gz +++ b/sub-02/ses-002/func/sub-02_ses-002_task-s01e05b_bold.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/gQ/2j/SHA256E-s539741957--7de5cace11868709fe985e0e43965f90c3d1b9bb2a8d6adb5a67082c5e1a3bcc.nii.gz/SHA256E-s539741957--7de5cace11868709fe985e0e43965f90c3d1b9bb2a8d6adb5a67082c5e1a3bcc.nii.gz \ No newline at end of file +../../../.git/annex/objects/W1/58/SHA256E-s516642210--79062408a86f8812c1f6c69debcfe86fb61e816a84a442d0e7d670508a26dc58.nii.gz/SHA256E-s516642210--79062408a86f8812c1f6c69debcfe86fb61e816a84a442d0e7d670508a26dc58.nii.gz \ No newline at end of file diff --git a/sub-02/ses-002/func/sub-02_ses-002_task-s01e05b_sbref.json b/sub-02/ses-002/func/sub-02_ses-002_task-s01e05b_sbref.json index d9947798666..7a589e194be 100644 --- a/sub-02/ses-002/func/sub-02_ses-002_task-s01e05b_sbref.json +++ b/sub-02/ses-002/func/sub-02_ses-002_task-s01e05b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "11:13:46.477500", + "AcquisitionTime": "10:48:29.722500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e05b", + "ProtocolName": "func_task-s01e04b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0362846, + "SAR": 0.0362783, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e05b_SBRef", - "SeriesNumber": 13, + "SeriesDescription": "func_task-s01e04b_SBRef", + "SeriesNumber": 9, "ShimSetting": [622, -7196, -8884, 411, -26, -126, 36, -22], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.295, 0.3925, 0.49, 0.5875, 0.685, 0.785, 0.8825, 0.98, 1.0775, 1.175, 1.275, 1.3725, 1.47, 1.5675, 1.665, 1.765, 1.8625, 1.96, 2.0575, 2.155, 2.255, 2.3525, 2.45, 2.5475, 2.645, 2.745, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.3125, 4.41, 4.5075, 4.605, 4.7025, 4.8025, 4.9, 4.9975, 5.095, 5.1925, 5.2925, 5.39, 5.4875, 5.585, 5.6825, 5.7825], + "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.08, 1.1775, 1.275, 1.3725, 1.47, 1.57, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 250.712, - "WipMemBlock": "ba90d0a2-84cf-4748-987f-8bca5f4da0fa||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "82c46d3d-d51a-43d9-8d9b-b883b4cbc37a||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9979159832000732, 0.08024448901414871, -0.04350166395306587, 99.63345336914062], [0.09121526032686234, 1.7200450897216797, -1.0164273977279663, -63.13176345825195], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "111346.477500", + "AcquisitionTime": "104829.722500", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "111513.893000", + "ContentTime": "104948.002000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,9 +107,9 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259197, + "ImagingFrequency": 123.259193, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "111513.893000", + "InstanceCreationTime": "104948.002000", "InstanceNumber": 1, "LargestImagePixelValue": 65535, "MRAcquisitionType": "2D", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e05b", + "ProtocolName": "func_task-s01e04b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03628455596771, + "SAR": 0.03627827524863, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e05b_SBRef", - "SeriesNumber": 13, - "SeriesTime": "111513.890000", + "SeriesDescription": "func_task-s01e04b_SBRef", + "SeriesNumber": 9, + "SeriesTime": "104947.997000", "SliceLocation": -60.659941154881, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "102317.838000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 13239.0, + "WindowCenter": 13209.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 28623.0, + "WindowWidth": 28582.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-02/ses-002/func/sub-02_ses-002_task-s01e05b_sbref.nii.gz b/sub-02/ses-002/func/sub-02_ses-002_task-s01e05b_sbref.nii.gz index 1a81f4c9035..2b81e35adaf 120000 --- a/sub-02/ses-002/func/sub-02_ses-002_task-s01e05b_sbref.nii.gz +++ b/sub-02/ses-002/func/sub-02_ses-002_task-s01e05b_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/xZ/z4/SHA256E-s1127656--5dab0c6dbdb3d3b007b66f2281dc43879adeb7fb56b40643a4b01fadf5b3ec33.nii.gz/SHA256E-s1127656--5dab0c6dbdb3d3b007b66f2281dc43879adeb7fb56b40643a4b01fadf5b3ec33.nii.gz \ No newline at end of file +../../../.git/annex/objects/MX/11/SHA256E-s1125997--38fc6beb2871d414e997bd6c59db8cc969d4c60586d5f948a0b4c661ada8d9a1.nii.gz/SHA256E-s1125997--38fc6beb2871d414e997bd6c59db8cc969d4c60586d5f948a0b4c661ada8d9a1.nii.gz \ No newline at end of file diff --git a/sub-02/ses-002/func/sub-02_ses-002_task-s01e06a_bold.json b/sub-02/ses-002/func/sub-02_ses-002_task-s01e06a_bold.json new file mode 100644 index 00000000000..fddcb70364f --- /dev/null +++ b/sub-02/ses-002/func/sub-02_ses-002_task-s01e06a_bold.json @@ -0,0 +1,168 @@ +{ + "AcquisitionMatrixPE": 104, + "AcquisitionNumber": 1, + "AcquisitionTime": "11:00:49.820000", + "BandwidthPerPixelPhaseEncode": 17.17, + "BaseResolution": 104, + "BodyPartExamined": "BRAIN", + "CoilString": "HC1-7;NC1_2", + "ConsistencyInfo": "N4_VE11C_LATEST_20160120", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", + "DerivedVendorReportedEchoSpacing": 0.000560011, + "DeviceSerialNumber": "167006", + "DwellTime": 2.1e-06, + "EchoTime": 0.037, + "EchoTrainLength": 104, + "EffectiveEchoSpacing": 0.000560011, + "FlipAngle": 52, + "ImageComments": "Unaliased_MB4_PE3_LB", + "ImageOrientationPatientDICOM": [0.998958, -0.0456076, 0.00168447, 0.0401222, 0.860023, -0.508676], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagingFrequency": 123.259, + "InPlanePhaseEncodingDirectionDICOM": "COL", + "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", + "InstitutionName": "IUGM", + "InstitutionalDepartmentName": "Department", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma_fit", + "Modality": "MR", + 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b/sub-02/ses-002/func/sub-02_ses-002_task-s01e06a_sbref.json similarity index 79% rename from sub-02/ses-002/func/sub-02_ses-002_task-s01e04b_sbref.json rename to sub-02/ses-002/func/sub-02_ses-002_task-s01e06a_sbref.json index 7a589e194be..5899994d208 100644 --- a/sub-02/ses-002/func/sub-02_ses-002_task-s01e04b_sbref.json +++ b/sub-02/ses-002/func/sub-02_ses-002_task-s01e06a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "10:48:29.722500", + "AcquisitionTime": "11:00:39.390000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e04b", + "ProtocolName": "func_task-s01e05a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0362783, + "SAR": 0.0362846, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e04b_SBRef", - "SeriesNumber": 9, + "SeriesDescription": "func_task-s01e05a_SBRef", + "SeriesNumber": 11, "ShimSetting": [622, -7196, -8884, 411, -26, -126, 36, -22], "SliceThickness": 2, - "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.08, 1.1775, 1.275, 1.3725, 1.47, 1.57, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825], + "SliceTiming": [0, 0.0975, 0.195, 0.295, 0.3925, 0.49, 0.5875, 0.685, 0.785, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.3125, 4.41, 4.5075, 4.605, 4.7025, 4.8025, 4.9, 4.9975, 5.095, 5.1925, 5.2925, 5.39, 5.4875, 5.585, 5.6825, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 250.712, - "WipMemBlock": "82c46d3d-d51a-43d9-8d9b-b883b4cbc37a||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "86ebab73-6500-49b6-8d3b-be44101a40c5||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9979159832000732, 0.08024448901414871, -0.04350166395306587, 99.63345336914062], [0.09121526032686234, 1.7200450897216797, -1.0164273977279663, -63.13176345825195], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "104829.722500", + "AcquisitionTime": "110039.390000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "104948.002000", + "ContentTime": "110207.863000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259193, + "ImagingFrequency": 123.259194, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "104948.002000", + "InstanceCreationTime": "110207.863000", "InstanceNumber": 1, - "LargestImagePixelValue": 65535, + "LargestImagePixelValue": 62886, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e04b", + "ProtocolName": "func_task-s01e05a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03627827524863, + "SAR": 0.03628455596771, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e04b_SBRef", - "SeriesNumber": 9, - "SeriesTime": "104947.997000", + "SeriesDescription": "func_task-s01e05a_SBRef", + "SeriesNumber": 11, + "SeriesTime": "110207.860000", "SliceLocation": -60.659941154881, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "102317.838000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 13209.0, + "WindowCenter": 13193.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 28582.0, + "WindowWidth": 28523.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-02/ses-002/func/sub-02_ses-002_task-s01e06a_sbref.nii.gz b/sub-02/ses-002/func/sub-02_ses-002_task-s01e06a_sbref.nii.gz new file mode 120000 index 00000000000..a4f8da220d2 --- /dev/null +++ b/sub-02/ses-002/func/sub-02_ses-002_task-s01e06a_sbref.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/w6/M4/SHA256E-s1127066--f8bc4a5fb4583b1615f37f39d810106e8e1edb25bcaf4f03275b9e1eb95d35ce.nii.gz/SHA256E-s1127066--f8bc4a5fb4583b1615f37f39d810106e8e1edb25bcaf4f03275b9e1eb95d35ce.nii.gz \ No newline at end of file diff --git a/sub-02/ses-002/func/sub-02_ses-002_task-s01e06b_bold.json b/sub-02/ses-002/func/sub-02_ses-002_task-s01e06b_bold.json new file mode 100644 index 00000000000..2becc17a3a3 --- /dev/null +++ b/sub-02/ses-002/func/sub-02_ses-002_task-s01e06b_bold.json @@ -0,0 +1,168 @@ +{ + "AcquisitionMatrixPE": 104, + "AcquisitionNumber": 1, + "AcquisitionTime": "11:13:56.907500", + "BandwidthPerPixelPhaseEncode": 17.17, + "BaseResolution": 104, + "BodyPartExamined": "BRAIN", + "CoilString": "HC1-7;NC1_2", + "ConsistencyInfo": "N4_VE11C_LATEST_20160120", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", + "DerivedVendorReportedEchoSpacing": 0.000560011, + "DeviceSerialNumber": "167006", + "DwellTime": 2.1e-06, + "EchoTime": 0.037, + "EchoTrainLength": 104, + "EffectiveEchoSpacing": 0.000560011, + "FlipAngle": 52, + "ImageComments": "Unaliased_MB4_PE3_LB", + "ImageOrientationPatientDICOM": [0.998958, -0.0456076, 0.00168447, 0.0401222, 0.860023, -0.508676], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagingFrequency": 123.259, + "InPlanePhaseEncodingDirectionDICOM": "COL", + "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", + "InstitutionName": "IUGM", + "InstitutionalDepartmentName": "Department", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma_fit", + "Modality": "MR", + "MultibandAccelerationFactor": 4, + "PartialFourier": 1, + "PatientPosition": "HFS", + "PercentPhaseFOV": 100, + "PhaseEncodingDirection": "j", + "PhaseEncodingSteps": 104, + "PhaseResolution": 1, + "PixelBandwidth": 2290, + "ProcedureStepDescription": "video_friends", + "ProtocolName": "func_task-s01e05b", + "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", + "ReceiveCoilActiveElements": "HC1-7;NC1,2", + "ReceiveCoilName": "HeadNeck_64", + "ReconMatrixPE": 104, + "RepetitionTime": 1.49, + "SAR": 0.0362846, + "ScanOptions": "FS", + "ScanningSequence": "EP", + "SequenceName": "epfid2d1_104", + "SequenceVariant": "SK_SS", + "SeriesDescription": "func_task-s01e05b", + "SeriesNumber": 14, + "ShimSetting": [622, -7196, -8884, 411, -26, -126, 36, -22], + "SliceThickness": 2, + "SliceTiming": [0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.275, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.275, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.275, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.275, 0.5875, 1.3725, 0.685], + "SoftwareVersions": "syngo_MR_E11", + "SpacingBetweenSlices": 2, + "StationName": "MRC35049", + "TaskName": "friends", + "TotalReadoutTime": 0.0576811, + "TxRefAmp": 250.712, + "WipMemBlock": "ba90d0a2-84cf-4748-987f-8bca5f4da0fa||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "dcmmeta_affine": [ + [-1.9979159832000732, 0.08024448901414871, -0.04350166395306587, 99.63345336914062], + [0.09121526032686234, 1.7200450897216797, -1.0164273977279663, -63.13176345825195], + [0.0033689371775835752, 1.0173522233963013, 1.7219126224517822, -105.20540618896484], + [0.0, 0.0, 0.0, 1.0] +], + "dcmmeta_reorient_transform": [ + [0.0, -1.0, 0.0, 103.0], + [1.0, 0.0, 0.0, 0.0], + [0.0, 0.0, 1.0, 0.0], + [0.0, 0.0, 0.0, 1.0] +], + "dcmmeta_shape": [104, 104, 60, 488], + "dcmmeta_slice_dim": 2, + "dcmmeta_version": 0.6, + "global": { + "const": { + "AcquisitionMatrix": [104, 0, 0, 104], + "AngioFlag": "N", + "BitsAllocated": 16, + "BitsStored": 16, + "BodyPartExamined": "BRAIN", + "Columns": 832, + "EchoNumbers": 1, + "EchoTime": 37.0, + "EchoTrainLength": 104, + "FlipAngle": 52.0, + "HighBit": 15, + "ImageOrientationPatient": [0.99895801051243, -0.0456076287337, 0.00168446856247, 0.04012224533256, 0.86002255560179, -0.5086761339847], + "ImagePositionPatient": [-864.34906454468, -706.9269479445, 368.67180958883], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagedNucleus": "1H", + "ImagingFrequency": 123.259197, + "InPlanePhaseEncodingDirection": "COL", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3.0, + "Manufacturer": "SIEMENS", + "ManufacturerModelName": "Prisma_fit", + "Modality": "MR", + "NumberOfAverages": 1.0, + "NumberOfPhaseEncodingSteps": 104, + "PercentPhaseFieldOfView": 100.0, + "PercentSampling": 100.0, + "PerformedProcedureStepStartTime": "102317.910000", + "PhotometricInterpretation": "MONOCHROME2", + "PixelBandwidth": 2290.0, + "PixelRepresentation": 0, + "PixelSpacing": [2.0, 2.0], + "ProtocolName": "func_task-s01e05b", + "RepetitionTime": 1490.0, + "Rows": 832, + "SAR": 0.03628455596771, + "SamplesPerPixel": 1, + "ScanOptions": "FS", + "ScanningSequence": "EP", + "SequenceName": "epfid2d1_104", + "SequenceVariant": [ + "SK", + "SS" +], + "SeriesDescription": "func_task-s01e05b", + "SeriesNumber": 14, + "SeriesTime": "111513.922000", + "SliceLocation": -60.659941154881, + "SliceThickness": 2.0, + "SmallestImagePixelValue": 0, + "SoftwareVersions": "syngo MR E11", + "SpacingBetweenSlices": 1.9999999850799, + "SpecificCharacterSet": "ISO_IR 100", + "StudyID": "1", + "StudyTime": "102317.838000", + "TransmitCoilName": "Body", + "VariableFlipAngleFlag": "N", + "WindowCenterWidthExplanation": "Algo1", + "dBdt": 0.0}, + "slices": {} + }, + "time": { + "samples": { + "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 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22799.0, 22833.0, 22850.0, 22847.0, 23097.0, 22948.0] + }, + "slices": {} + } +} \ No newline at end of file diff --git a/sub-02/ses-002/func/sub-02_ses-002_task-s01e06b_bold.nii.gz b/sub-02/ses-002/func/sub-02_ses-002_task-s01e06b_bold.nii.gz new file mode 120000 index 00000000000..703622f2474 --- /dev/null +++ b/sub-02/ses-002/func/sub-02_ses-002_task-s01e06b_bold.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/gQ/2j/SHA256E-s539741957--7de5cace11868709fe985e0e43965f90c3d1b9bb2a8d6adb5a67082c5e1a3bcc.nii.gz/SHA256E-s539741957--7de5cace11868709fe985e0e43965f90c3d1b9bb2a8d6adb5a67082c5e1a3bcc.nii.gz \ No newline at end of file diff --git a/sub-02/ses-002/func/sub-02_ses-002_task-s01e04a_sbref.json b/sub-02/ses-002/func/sub-02_ses-002_task-s01e06b_sbref.json similarity index 80% rename from sub-02/ses-002/func/sub-02_ses-002_task-s01e04a_sbref.json rename to sub-02/ses-002/func/sub-02_ses-002_task-s01e06b_sbref.json index 64804de9d9f..d9947798666 100644 --- a/sub-02/ses-002/func/sub-02_ses-002_task-s01e04a_sbref.json +++ b/sub-02/ses-002/func/sub-02_ses-002_task-s01e06b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "10:36:20.305000", + "AcquisitionTime": "11:13:46.477500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e04a", + "ProtocolName": "func_task-s01e05b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0362783, + "SAR": 0.0362846, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e04a_SBRef", - "SeriesNumber": 7, + "SeriesDescription": "func_task-s01e05b_SBRef", + "SeriesNumber": 13, "ShimSetting": [622, -7196, -8884, 411, -26, -126, 36, -22], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.1975, 0.295, 0.3925, 0.49, 0.5875, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.625, 3.725, 3.8225, 3.92, 4.0175, 4.115, 4.215, 4.3125, 4.41, 4.5075, 4.605, 4.705, 4.8025, 4.9, 4.9975, 5.095, 5.195, 5.2925, 5.39, 5.4875, 5.585, 5.685, 5.7825], + "SliceTiming": [0, 0.0975, 0.195, 0.295, 0.3925, 0.49, 0.5875, 0.685, 0.785, 0.8825, 0.98, 1.0775, 1.175, 1.275, 1.3725, 1.47, 1.5675, 1.665, 1.765, 1.8625, 1.96, 2.0575, 2.155, 2.255, 2.3525, 2.45, 2.5475, 2.645, 2.745, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.3125, 4.41, 4.5075, 4.605, 4.7025, 4.8025, 4.9, 4.9975, 5.095, 5.1925, 5.2925, 5.39, 5.4875, 5.585, 5.6825, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 250.712, - "WipMemBlock": "e459100c-e8b0-4cf0-a25b-f0e8efdd8d2a||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "ba90d0a2-84cf-4748-987f-8bca5f4da0fa||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9979159832000732, 0.08024448901414871, -0.04350166395306587, 99.63345336914062], [0.09121526032686234, 1.7200450897216797, -1.0164273977279663, -63.13176345825195], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "103620.305000", + "AcquisitionTime": "111346.477500", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "103753.894000", + "ContentTime": "111513.893000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,9 +107,9 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259185, + "ImagingFrequency": 123.259197, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "103753.894000", + "InstanceCreationTime": "111513.893000", "InstanceNumber": 1, "LargestImagePixelValue": 65535, "MRAcquisitionType": "2D", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e04a", + "ProtocolName": "func_task-s01e05b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03627827524863, + "SAR": 0.03628455596771, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e04a_SBRef", - "SeriesNumber": 7, - "SeriesTime": "103753.890000", + "SeriesDescription": "func_task-s01e05b_SBRef", + "SeriesNumber": 13, + "SeriesTime": "111513.890000", "SliceLocation": -60.659941154881, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "102317.838000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 13288.0, + "WindowCenter": 13239.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 28827.0, + "WindowWidth": 28623.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-02/ses-002/func/sub-02_ses-002_task-s01e06b_sbref.nii.gz b/sub-02/ses-002/func/sub-02_ses-002_task-s01e06b_sbref.nii.gz new file mode 120000 index 00000000000..1a81f4c9035 --- /dev/null +++ b/sub-02/ses-002/func/sub-02_ses-002_task-s01e06b_sbref.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/xZ/z4/SHA256E-s1127656--5dab0c6dbdb3d3b007b66f2281dc43879adeb7fb56b40643a4b01fadf5b3ec33.nii.gz/SHA256E-s1127656--5dab0c6dbdb3d3b007b66f2281dc43879adeb7fb56b40643a4b01fadf5b3ec33.nii.gz \ No newline at end of file diff --git a/sub-02/ses-052/func/sub-02_ses-052_task-s06e14a_bold.json b/sub-02/ses-052/func/sub-02_ses-052_task-s06e14a_bold.json deleted file mode 100644 index 4ad60f931ad..00000000000 --- a/sub-02/ses-052/func/sub-02_ses-052_task-s06e14a_bold.json +++ /dev/null @@ -1,169 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "11:35:4.317500", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190902", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": "167006", - "DwellTime": 2.1e-06, - "EchoTime": 0.037, - "EchoTrainLength": 104, - "EffectiveEchoSpacing": 0.000560011, - "FlipAngle": 52, - "HeudiconvVersion": "0.10.0", - "ImageComments": "Unaliased_MB4_PE3_LB", - "ImageOrientationPatientDICOM": [0.99965, 0.0125851, 0.0232809, 0.000872328, 0.863546, -0.504269], - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "MB", - "ND", - "MOSAIC" -], - 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"InstitutionalDepartmentName": "Department", - "MRAcquisitionType": "2D", - "MagneticFieldStrength": 3, - "Manufacturer": "Siemens", - "ManufacturersModelName": "Prisma_fit", - "Modality": "MR", - "PartialFourier": 1, - "PatientPosition": "HFS", - "PercentPhaseFOV": 100, - "PhaseEncodingDirection": "j", - "PhaseEncodingSteps": 104, - "PhaseResolution": 1, - "PixelBandwidth": 2290, - "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-friends-s06e14b", - "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", - "ReceiveCoilActiveElements": "HC1-7;NC1,2", - "ReceiveCoilName": "HeadNeck_64", - "ReconMatrixPE": 104, - "RepetitionTime": 1.49, - "SAR": 0.0589353, - "ScanOptions": "FS", - "ScanningSequence": "EP", - "SequenceName": "epfid2d1_104", - "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-friends-s06e14b_SBRef", - "SeriesNumber": 14, - "ShimSetting": [622, -7197, -8865, 258, -4, -223, 20, 20], - "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.45, 2.5475, 2.645, 2.7425, 2.84, 2.94, 3.0375, 3.135, 3.2325, 3.33, 3.43, 3.5275, 3.625, 3.7225, 3.82, 3.92, 4.0175, 4.115, 4.2125, 4.31, 4.41, 4.5075, 4.605, 4.7025, 4.8, 4.9, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78], - "SoftwareVersions": "syngo_MR_E11", - "SpacingBetweenSlices": 2, - "StationName": "MRC35049", - "TaskName": "s06e14b", - "TotalReadoutTime": 0.0576811, - "TxRefAmp": 293.458, - "WipMemBlock": "c8801f39-f0e4-4eb8-b01d-a7293d68120f||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", - "dcmmeta_affine": [ - [-1.9992995262145996, 0.0017446557758376002, 0.05290075019001961, 101.59974670410156], - [-0.025170182809233665, 1.7270920276641846, -1.0082260370254517, -59.03706741333008], - [0.04656173288822174, 1.0085387229919434, 1.726465106010437, -99.18464660644531], - [0.0, 0.0, 0.0, 1.0] -], - "dcmmeta_reorient_transform": [ - [0.0, -1.0, 0.0, 103.0], - [1.0, 0.0, 0.0, 0.0], - [0.0, 0.0, 1.0, 0.0], - [0.0, 0.0, 0.0, 1.0] -], - "dcmmeta_shape": [104, 104, 60], - "dcmmeta_slice_dim": 2, - "dcmmeta_version": 0.6, - "global": { - "const": { - "AcquisitionMatrix": [104, 0, 0, 104], - "AcquisitionNumber": 1, - "AcquisitionTime": "114749.945000", - "AngioFlag": "N", - "BitsAllocated": 16, - "BitsStored": 16, - "BodyPartExamined": "BRAIN", - "Columns": 832, - "ContentTime": "114916.523000", - "EchoNumbers": 1, - "EchoTime": 37.0, - "EchoTrainLength": 104, - "FlipAngle": 52.0, - "HighBit": 15, - "ImageOrientationPatient": [0.99964974702687, 0.01258509110741, 0.02328086662769, 0.00087232790135, 0.86354598631215, -0.5042693412931], - "ImagePositionPatient": [-830.15951311075, -756.67683140697, 354.85444995362], - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "ND", - "MOSAIC" -], - "ImagedNucleus": "1H", - "ImagingFrequency": 123.258871, - "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "114916.523000", - "InstanceNumber": 1, - "LargestImagePixelValue": 62688, - "MRAcquisitionType": "2D", - "MagneticFieldStrength": 3.0, - "Manufacturer": "SIEMENS", - "ManufacturerModelName": "Prisma_fit", - "Modality": "MR", - "NumberOfAverages": 1.0, - "NumberOfPhaseEncodingSteps": 104, - "PercentPhaseFieldOfView": 100.0, - "PercentSampling": 100.0, - "PerformedProcedureStepStartTime": "103159.817000", - "PhotometricInterpretation": "MONOCHROME2", - "PixelBandwidth": 2290.0, - "PixelRepresentation": 0, - "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-friends-s06e14b", - "RepetitionTime": 1490.0, - "Rows": 832, - "SAR": 0.05893533777578, - "SamplesPerPixel": 1, - "ScanOptions": "FS", - "ScanningSequence": "EP", - "SequenceName": "epfid2d1_104", - "SequenceVariant": [ - "SK", - "SS" -], - "SeriesDescription": "func_task-friends-s06e14b_SBRef", - "SeriesNumber": 14, - "SeriesTime": "114916.520000", - "SliceLocation": -53.170707498091, - "SliceThickness": 2.0, - "SmallestImagePixelValue": 0, - "SoftwareVersions": "syngo MR E11", - "SpacingBetweenSlices": 2.0000000184838, - "SpecificCharacterSet": "ISO_IR 100", - "StudyID": "1", - "StudyTime": "103159.750000", - "TransmitCoilName": "Body", - "VariableFlipAngleFlag": "N", - "WindowCenter": 12999.0, - "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 28021.0, - "dBdt": 0.0}, - "slices": {} - } -} \ No newline at end of file diff --git a/sub-02/ses-052/func/sub-02_ses-052_task-s06e14b_sbref.nii.gz b/sub-02/ses-052/func/sub-02_ses-052_task-s06e14b_sbref.nii.gz deleted file mode 120000 index 63c698fd3c7..00000000000 --- a/sub-02/ses-052/func/sub-02_ses-052_task-s06e14b_sbref.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/zw/M2/SHA256E-s1113564--3b35286243d4074451027ad850bba75e3f33d83961cd2880cd3d93fee448ec03.nii.gz/SHA256E-s1113564--3b35286243d4074451027ad850bba75e3f33d83961cd2880cd3d93fee448ec03.nii.gz \ No newline at end of file diff --git a/sub-02/ses-052/sub-02_ses-052_scans.tsv b/sub-02/ses-052/sub-02_ses-052_scans.tsv index e5a9c9da74a..674e4e42a47 120000 --- a/sub-02/ses-052/sub-02_ses-052_scans.tsv +++ b/sub-02/ses-052/sub-02_ses-052_scans.tsv @@ -1 +1 @@ -../../.git/annex/objects/32/Fx/SHA256E-s1614--66b083242cabacc8c54a06b68ccc97121b60d56537649add2a47688d5b6e4d89.tsv/SHA256E-s1614--66b083242cabacc8c54a06b68ccc97121b60d56537649add2a47688d5b6e4d89.tsv \ No newline at end of file +../../.git/annex/objects/XM/Mj/SHA256E-s1172--d18d96c9b2c88835e9d7c1b6e20aea28a4b2810cd95624fc34de26311ea0200c.tsv/SHA256E-s1172--d18d96c9b2c88835e9d7c1b6e20aea28a4b2810cd95624fc34de26311ea0200c.tsv \ No newline at end of file diff --git a/sub-03/ses-001/func/sub-03_ses-001_task-s01e02a_bold.json b/sub-03/ses-001/func/sub-03_ses-001_task-s01e02a_bold.json index 1399df965e4..64f478280a4 100644 --- a/sub-03/ses-001/func/sub-03_ses-001_task-s01e02a_bold.json +++ b/sub-03/ses-001/func/sub-03_ses-001_task-s01e02a_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "11:16:7.395000", + "AcquisitionTime": "10:51:4.145000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -45,29 +45,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e02a", + "ProtocolName": "func_task-s01e01a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0289744, + "SAR": 0.0289769, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e02a", - "SeriesNumber": 13, + "SeriesDescription": "func_task-s01e01a", + "SeriesNumber": 9, "ShimSetting": [621, -7161, -8818, 671, 12, 161, 33, -3], "SliceThickness": 2, - "SliceTiming": [0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875], + "SliceTiming": [0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 208.509, - "WipMemBlock": "57887ed5-8cc5-4ebd-895e-d0dd20e0f1c4||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "e5811c92-2ed3-4cb9-a208-d37e83422976||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9995217323303223, 0.039090968668460846, -0.019618121907114983, 102.92753601074219], [0.04343879967927933, 1.879563808441162, -0.6821679472923279, -79.03658294677734], @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 472], + "dcmmeta_shape": [104, 104, 60, 482], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259529, + "ImagingFrequency": 123.259509, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e02a", + "ProtocolName": "func_task-s01e01a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.02897438988976, + "SAR": 0.02897690679212, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,9 +135,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e02a", - "SeriesNumber": 13, - "SeriesTime": "111716.835000", + "SeriesDescription": "func_task-s01e01a", + "SeriesNumber": 9, + "SeriesTime": "105224.663000", "SliceLocation": -41.397120293471, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -154,14 +154,14 @@ }, "time": { "samples": { - "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 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20812.0, 20840.0, 20828.0, 20818.0, 20802.0, 20809.0, 20789.0, 20783.0, 20781.0, 20791.0, 20797.0, 20807.0, 20830.0, 20838.0, 20821.0, 20828.0, 20827.0, 20826.0, 20810.0, 20791.0, 20791.0, 20814.0, 20831.0, 20806.0, 20810.0, 20804.0, 20807.0, 20807.0, 20795.0, 20784.0, 20776.0, 20754.0, 20741.0, 20744.0, 20742.0, 20764.0, 20774.0, 20831.0, 20873.0, 20859.0] }, "slices": {} } diff --git a/sub-03/ses-001/func/sub-03_ses-001_task-s01e02a_bold.nii.gz b/sub-03/ses-001/func/sub-03_ses-001_task-s01e02a_bold.nii.gz index a6742343810..9c05a3a66c5 120000 --- a/sub-03/ses-001/func/sub-03_ses-001_task-s01e02a_bold.nii.gz +++ b/sub-03/ses-001/func/sub-03_ses-001_task-s01e02a_bold.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/5p/Pg/SHA256E-s496451840--7c8f6162e0014e9156cd098a923af383957ce5a9143dcc318f28b5400e209191.nii.gz/SHA256E-s496451840--7c8f6162e0014e9156cd098a923af383957ce5a9143dcc318f28b5400e209191.nii.gz \ No newline at end of file +../../../.git/annex/objects/3z/x1/SHA256E-s505938990--8d46f9a4208009c20883e597548aa7e5178532e1d083c5e39f5135897579bf2e.nii.gz/SHA256E-s505938990--8d46f9a4208009c20883e597548aa7e5178532e1d083c5e39f5135897579bf2e.nii.gz \ No newline at end of file diff --git a/sub-03/ses-001/func/sub-03_ses-001_task-s01e02a_sbref.json b/sub-03/ses-001/func/sub-03_ses-001_task-s01e02a_sbref.json index a4b67bfd190..2c66e71cb5c 100644 --- a/sub-03/ses-001/func/sub-03_ses-001_task-s01e02a_sbref.json +++ b/sub-03/ses-001/func/sub-03_ses-001_task-s01e02a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "11:15:56.965000", + "AcquisitionTime": "10:50:53.715000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e02a_SBRef", + "ProtocolName": "func_task-s01e01a_SBRef", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0289744, + "SAR": 0.0289769, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e02a_SBRef", - "SeriesNumber": 12, + "SeriesDescription": "func_task-s01e01a_SBRef", + "SeriesNumber": 8, "ShimSetting": [621, -7161, -8818, 671, 12, 161, 33, -3], "SliceThickness": 2, - "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.08, 1.1775, 1.275, 1.3725, 1.47, 1.57, 1.6675, 1.765, 1.8625, 1.96, 2.06, 2.1575, 2.255, 2.3525, 2.45, 2.55, 2.6475, 2.745, 2.8425, 2.94, 3.04, 3.1375, 3.235, 3.3325, 3.43, 3.53, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825], + "SliceTiming": [0, 0.0975, 0.1975, 0.295, 0.3925, 0.49, 0.5875, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.135, 3.235, 3.3325, 3.43, 3.5275, 3.625, 3.725, 3.8225, 3.92, 4.0175, 4.115, 4.215, 4.3125, 4.41, 4.5075, 4.605, 4.705, 4.8025, 4.9, 4.9975, 5.095, 5.195, 5.2925, 5.39, 5.4875, 5.585, 5.685, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 208.509, - "WipMemBlock": "57887ed5-8cc5-4ebd-895e-d0dd20e0f1c4||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "e5811c92-2ed3-4cb9-a208-d37e83422976||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9995217323303223, 0.039090968668460846, -0.019618121907114983, 102.92753601074219], [0.04343879967927933, 1.879563808441162, -0.6821679472923279, -79.03658294677734], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "111556.965000", + "AcquisitionTime": "105053.715000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "111716.808000", + "ContentTime": "105224.645000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259529, + "ImagingFrequency": 123.259509, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "111716.808000", + "InstanceCreationTime": "105224.645000", "InstanceNumber": 1, - "LargestImagePixelValue": 55013, + "LargestImagePixelValue": 59311, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e02a_SBRef", + "ProtocolName": "func_task-s01e01a_SBRef", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.02897438988976, + "SAR": 0.02897690679212, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e02a_SBRef", - "SeriesNumber": 12, - "SeriesTime": "111716.805000", + "SeriesDescription": "func_task-s01e01a_SBRef", + "SeriesNumber": 8, + "SeriesTime": "105224.641000", "SliceLocation": -41.397120293471, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "102922.156000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 11628.0, + "WindowCenter": 11875.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 24616.0, + "WindowWidth": 25291.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-03/ses-001/func/sub-03_ses-001_task-s01e02a_sbref.nii.gz b/sub-03/ses-001/func/sub-03_ses-001_task-s01e02a_sbref.nii.gz index 8ced57dc178..cd8df95e924 120000 --- a/sub-03/ses-001/func/sub-03_ses-001_task-s01e02a_sbref.nii.gz +++ b/sub-03/ses-001/func/sub-03_ses-001_task-s01e02a_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/JX/16/SHA256E-s1087435--f90afd5628e8d03dc8a6eb64a5668367577fc3fa6e5b6c98172aefd3607bf43c.nii.gz/SHA256E-s1087435--f90afd5628e8d03dc8a6eb64a5668367577fc3fa6e5b6c98172aefd3607bf43c.nii.gz \ No newline at end of file +../../../.git/annex/objects/xp/z5/SHA256E-s1086399--5893110c0e425857f7063293fac4126ebac9c7b777fdcd49596aa43e1238d9c3.nii.gz/SHA256E-s1086399--5893110c0e425857f7063293fac4126ebac9c7b777fdcd49596aa43e1238d9c3.nii.gz \ No newline at end of file diff --git a/sub-03/ses-001/func/sub-03_ses-001_task-s01e02b_bold.json b/sub-03/ses-001/func/sub-03_ses-001_task-s01e02b_bold.json index 8643e6aab4c..b1e53a00dbc 100644 --- a/sub-03/ses-001/func/sub-03_ses-001_task-s01e02b_bold.json +++ b/sub-03/ses-001/func/sub-03_ses-001_task-s01e02b_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "11:37:16.377500", + "AcquisitionTime": "11:03:35.565000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -17,7 +17,7 @@ "EffectiveEchoSpacing": 0.000560011, "FlipAngle": 52, "ImageComments": "Unaliased_MB4_PE3_LB", - "ImageOrientationPatientDICOM": [0.999903, -0.0114563, 0.00789211, 0.0134386, 0.942103, -0.335055], + "ImageOrientationPatientDICOM": [0.999761, -0.0217194, -0.00255173, 0.0195455, 0.939782, -0.341215], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -45,33 +45,33 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e02b", + "ProtocolName": "func_task-s01e01b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0303893, + "SAR": 0.0289769, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e02b", - "SeriesNumber": 21, - "ShimSetting": [628, -7170, -8821, 676, 36, 161, 19, -7], + "SeriesDescription": "func_task-s01e01b", + "SeriesNumber": 11, + "ShimSetting": [621, -7161, -8818, 671, 12, 161, 33, -3], "SliceThickness": 2, - "SliceTiming": [0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685], + "SliceTiming": [0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, - "TxRefAmp": 210.594, - "WipMemBlock": "9a38aea3-0f23-415a-8d91-70cde5528cb7||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "TxRefAmp": 208.509, + "WipMemBlock": "aec2deff-5bc7-4d7b-95b2-ab04df62995b||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ - [-1.9998064041137695, 0.02687716670334339, 0.0071933940052986145, 102.83158874511719], - [0.022912560030817986, 1.8842055797576904, -0.6702569127082825, -78.381103515625], - [0.01578422077000141, 0.6701096892356873, 1.8843311071395874, -71.97803497314453], + [-1.9995217323303223, 0.039090968668460846, -0.019618121907114983, 102.92753601074219], + [0.04343879967927933, 1.879563808441162, -0.6821679472923279, -79.03658294677734], + [-0.00510345259681344, 0.6824308633804321, 1.8799632787704468, -71.64566040039062], [0.0, 0.0, 0.0, 1.0] ], "dcmmeta_reorient_transform": [ @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 472], + "dcmmeta_shape": [104, 104, 60, 482], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -96,8 +96,8 @@ "EchoTrainLength": 104, "FlipAngle": 52.0, "HighBit": 15, - "ImageOrientationPatient": [0.99990322944334, -0.011456279703, 0.0078921102465, 0.0134385832052, 0.94210278664011, -0.3350548371332], - "ImagePositionPatient": [-843.31277546186, -793.20272661163, 235.21772601953], + "ImageOrientationPatient": [0.99976084958517, -0.0217193998415, -0.0025517263303, 0.01954548451599, 0.93978188941067, -0.3412154368881], + "ImagePositionPatient": [-849.00891936439, -782.90797980119, 248.90721268957], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259525, + "ImagingFrequency": 123.259521, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e02b", + "ProtocolName": "func_task-s01e01b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03038934864771, + "SAR": 0.02897690679212, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,14 +135,14 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e02b", - "SeriesNumber": 21, - "SeriesTime": "113856.851000", - "SliceLocation": -41.177633408466, + "SeriesDescription": "func_task-s01e01b", + "SeriesNumber": 11, + "SeriesTime": "110455.712000", + "SliceLocation": -41.397120293471, "SliceThickness": 2.0, 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"slices": {} } diff --git a/sub-03/ses-001/func/sub-03_ses-001_task-s01e02b_bold.nii.gz b/sub-03/ses-001/func/sub-03_ses-001_task-s01e02b_bold.nii.gz index 34c922ad889..40eafe3cc9e 120000 --- a/sub-03/ses-001/func/sub-03_ses-001_task-s01e02b_bold.nii.gz +++ b/sub-03/ses-001/func/sub-03_ses-001_task-s01e02b_bold.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/3P/PP/SHA256E-s495806089--a3c0a85e0db53875df575f3e79f422ac66da943eb977eda2f87f17540047ae92.nii.gz/SHA256E-s495806089--a3c0a85e0db53875df575f3e79f422ac66da943eb977eda2f87f17540047ae92.nii.gz \ No newline at end of file +../../../.git/annex/objects/5V/vg/SHA256E-s506169436--bd87b242c6e7f0294e9758d5dad71c0cd6925368f22620ad265950bf4dd5f51b.nii.gz/SHA256E-s506169436--bd87b242c6e7f0294e9758d5dad71c0cd6925368f22620ad265950bf4dd5f51b.nii.gz \ No newline at end of file diff --git a/sub-03/ses-001/func/sub-03_ses-001_task-s01e02b_sbref.json b/sub-03/ses-001/func/sub-03_ses-001_task-s01e02b_sbref.json index c21b17e338a..135b89243bc 100644 --- a/sub-03/ses-001/func/sub-03_ses-001_task-s01e02b_sbref.json +++ b/sub-03/ses-001/func/sub-03_ses-001_task-s01e02b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "11:37:5.947500", + "AcquisitionTime": "11:03:25.135000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -17,7 +17,7 @@ "EffectiveEchoSpacing": 0.000560011, "FlipAngle": 52, "ImageComments": "Single-band_reference", - "ImageOrientationPatientDICOM": [0.999903, -0.0114563, 0.00789211, 0.0134386, 0.942103, -0.335055], + "ImageOrientationPatientDICOM": [0.999761, -0.0217194, -0.00255173, 0.0195455, 0.939782, -0.341215], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -43,33 +43,33 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e02b_SBRef", + "ProtocolName": "func_task-s01e01b_SBRef", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0303893, + "SAR": 0.0289769, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e02b_SBRef", - "SeriesNumber": 20, - "ShimSetting": [628, -7170, -8821, 676, 36, 161, 19, -7], + "SeriesDescription": "func_task-s01e01b_SBRef", + "SeriesNumber": 10, + "ShimSetting": [621, -7161, -8818, 671, 12, 161, 33, -3], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.4475, 2.5475, 2.645, 2.7425, 2.84, 2.9375, 3.0375, 3.135, 3.2325, 3.33, 3.4275, 3.5275, 3.625, 3.7225, 3.82, 3.9175, 4.0175, 4.115, 4.2125, 4.31, 4.4075, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78], + "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.08, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, - "TxRefAmp": 210.594, - "WipMemBlock": "9a38aea3-0f23-415a-8d91-70cde5528cb7||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "TxRefAmp": 208.509, + "WipMemBlock": "aec2deff-5bc7-4d7b-95b2-ab04df62995b||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ - [-1.9998064041137695, 0.02687716670334339, 0.0071933940052986145, 102.83158874511719], - [0.022912560030817986, 1.8842055797576904, -0.6702569127082825, -78.381103515625], - [0.01578422077000141, 0.6701096892356873, 1.8843311071395874, -71.97803497314453], + [-1.9995217323303223, 0.039090968668460846, -0.019618121907114983, 102.92753601074219], + [0.04343879967927933, 1.879563808441162, -0.6821679472923279, -79.03658294677734], + [-0.00510345259681344, 0.6824308633804321, 1.8799632787704468, -71.64566040039062], [0.0, 0.0, 0.0, 1.0] ], "dcmmeta_reorient_transform": [ @@ -85,20 +85,20 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "113705.947500", + "AcquisitionTime": "110325.135000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "113856.830000", + "ContentTime": "110455.686000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, "FlipAngle": 52.0, "HighBit": 15, - "ImageOrientationPatient": [0.99990322944334, -0.011456279703, 0.0078921102465, 0.0134385832052, 0.94210278664011, -0.3350548371332], - "ImagePositionPatient": [-843.31277546186, -793.20272661163, 235.21772601953], + "ImageOrientationPatient": [0.99976084958517, -0.0217193998415, -0.0025517263303, 0.01954548451599, 0.93978188941067, -0.3412154368881], + "ImagePositionPatient": [-849.00891936439, -782.90797980119, 248.90721268957], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259525, + "ImagingFrequency": 123.259521, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "113856.830000", + "InstanceCreationTime": "110455.686000", "InstanceNumber": 1, - "LargestImagePixelValue": 56130, + "LargestImagePixelValue": 56798, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e02b_SBRef", + "ProtocolName": "func_task-s01e01b_SBRef", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03038934864771, + "SAR": 0.02897690679212, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,22 +138,22 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e02b_SBRef", - "SeriesNumber": 20, - "SeriesTime": "113856.827000", - "SliceLocation": -41.177633408466, + "SeriesDescription": "func_task-s01e01b_SBRef", + "SeriesNumber": 10, + "SeriesTime": "110455.682000", + "SliceLocation": -41.397120293471, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, "SoftwareVersions": "syngo MR E11", - "SpacingBetweenSlices": 1.9999999303852, + "SpacingBetweenSlices": 1.9999999985283, "SpecificCharacterSet": "ISO_IR 100", "StudyID": "1", "StudyTime": "102922.156000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 11665.0, + "WindowCenter": 11771.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 24655.0, + "WindowWidth": 24999.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-03/ses-001/func/sub-03_ses-001_task-s01e02b_sbref.nii.gz b/sub-03/ses-001/func/sub-03_ses-001_task-s01e02b_sbref.nii.gz index ff3083eb19c..8c93007512a 120000 --- a/sub-03/ses-001/func/sub-03_ses-001_task-s01e02b_sbref.nii.gz +++ b/sub-03/ses-001/func/sub-03_ses-001_task-s01e02b_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/fV/zJ/SHA256E-s1085953--3f726b1283c6686f1171140d1874e8e4f4336448c705914b3cbf69939916087a.nii.gz/SHA256E-s1085953--3f726b1283c6686f1171140d1874e8e4f4336448c705914b3cbf69939916087a.nii.gz \ No newline at end of file +../../../.git/annex/objects/Vj/gF/SHA256E-s1086564--60948898b17e6e0374ae7d6c966e7c15249f6c1388953c23119e52c30f8c06b2.nii.gz/SHA256E-s1086564--60948898b17e6e0374ae7d6c966e7c15249f6c1388953c23119e52c30f8c06b2.nii.gz \ No newline at end of file diff --git a/sub-03/ses-001/func/sub-03_ses-001_task-s01e03a_bold.json b/sub-03/ses-001/func/sub-03_ses-001_task-s01e03a_bold.json new file mode 100644 index 00000000000..1399df965e4 --- /dev/null +++ b/sub-03/ses-001/func/sub-03_ses-001_task-s01e03a_bold.json @@ -0,0 +1,168 @@ +{ + "AcquisitionMatrixPE": 104, + "AcquisitionNumber": 1, + "AcquisitionTime": "11:16:7.395000", + "BandwidthPerPixelPhaseEncode": 17.17, + "BaseResolution": 104, + "BodyPartExamined": "BRAIN", + "CoilString": "HC1-7;NC1_2", + "ConsistencyInfo": "N4_VE11C_LATEST_20160120", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", + "DerivedVendorReportedEchoSpacing": 0.000560011, + "DeviceSerialNumber": "167006", + "DwellTime": 2.1e-06, + "EchoTime": 0.037, + "EchoTrainLength": 104, + "EffectiveEchoSpacing": 0.000560011, + "FlipAngle": 52, + "ImageComments": "Unaliased_MB4_PE3_LB", + "ImageOrientationPatientDICOM": [0.999761, -0.0217194, -0.00255173, 0.0195455, 0.939782, -0.341215], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagingFrequency": 123.26, + 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mode 120000 index 00000000000..a6742343810 --- /dev/null +++ b/sub-03/ses-001/func/sub-03_ses-001_task-s01e03a_bold.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/5p/Pg/SHA256E-s496451840--7c8f6162e0014e9156cd098a923af383957ce5a9143dcc318f28b5400e209191.nii.gz/SHA256E-s496451840--7c8f6162e0014e9156cd098a923af383957ce5a9143dcc318f28b5400e209191.nii.gz \ No newline at end of file diff --git a/sub-03/ses-001/func/sub-03_ses-001_task-s01e06b_sbref.json b/sub-03/ses-001/func/sub-03_ses-001_task-s01e03a_sbref.json similarity index 82% rename from sub-03/ses-001/func/sub-03_ses-001_task-s01e06b_sbref.json rename to sub-03/ses-001/func/sub-03_ses-001_task-s01e03a_sbref.json index 135b89243bc..a4b67bfd190 100644 --- a/sub-03/ses-001/func/sub-03_ses-001_task-s01e06b_sbref.json +++ b/sub-03/ses-001/func/sub-03_ses-001_task-s01e03a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "11:03:25.135000", + "AcquisitionTime": "11:15:56.965000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e01b_SBRef", + "ProtocolName": "func_task-s01e02a_SBRef", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0289769, + "SAR": 0.0289744, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e01b_SBRef", - "SeriesNumber": 10, + "SeriesDescription": "func_task-s01e02a_SBRef", + "SeriesNumber": 12, "ShimSetting": [621, -7161, -8818, 671, 12, 161, 33, -3], "SliceThickness": 2, - "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.08, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825], + "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.08, 1.1775, 1.275, 1.3725, 1.47, 1.57, 1.6675, 1.765, 1.8625, 1.96, 2.06, 2.1575, 2.255, 2.3525, 2.45, 2.55, 2.6475, 2.745, 2.8425, 2.94, 3.04, 3.1375, 3.235, 3.3325, 3.43, 3.53, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 208.509, - "WipMemBlock": "aec2deff-5bc7-4d7b-95b2-ab04df62995b||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "57887ed5-8cc5-4ebd-895e-d0dd20e0f1c4||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9995217323303223, 0.039090968668460846, -0.019618121907114983, 102.92753601074219], [0.04343879967927933, 1.879563808441162, -0.6821679472923279, -79.03658294677734], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "110325.135000", + "AcquisitionTime": "111556.965000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "110455.686000", + "ContentTime": "111716.808000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259521, + "ImagingFrequency": 123.259529, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "110455.686000", + "InstanceCreationTime": "111716.808000", "InstanceNumber": 1, - "LargestImagePixelValue": 56798, + "LargestImagePixelValue": 55013, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e01b_SBRef", + "ProtocolName": "func_task-s01e02a_SBRef", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.02897690679212, + "SAR": 0.02897438988976, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e01b_SBRef", - "SeriesNumber": 10, - "SeriesTime": "110455.682000", + "SeriesDescription": "func_task-s01e02a_SBRef", + "SeriesNumber": 12, + "SeriesTime": "111716.805000", "SliceLocation": -41.397120293471, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "102922.156000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 11771.0, + "WindowCenter": 11628.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 24999.0, + "WindowWidth": 24616.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-03/ses-001/func/sub-03_ses-001_task-s01e03a_sbref.nii.gz b/sub-03/ses-001/func/sub-03_ses-001_task-s01e03a_sbref.nii.gz new file mode 120000 index 00000000000..8ced57dc178 --- /dev/null +++ b/sub-03/ses-001/func/sub-03_ses-001_task-s01e03a_sbref.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/JX/16/SHA256E-s1087435--f90afd5628e8d03dc8a6eb64a5668367577fc3fa6e5b6c98172aefd3607bf43c.nii.gz/SHA256E-s1087435--f90afd5628e8d03dc8a6eb64a5668367577fc3fa6e5b6c98172aefd3607bf43c.nii.gz \ No newline at end of file diff --git a/sub-03/ses-001/func/sub-03_ses-001_task-s01e03b_bold.json b/sub-03/ses-001/func/sub-03_ses-001_task-s01e03b_bold.json new file mode 100644 index 00000000000..8643e6aab4c --- /dev/null +++ b/sub-03/ses-001/func/sub-03_ses-001_task-s01e03b_bold.json @@ -0,0 +1,168 @@ +{ + "AcquisitionMatrixPE": 104, + "AcquisitionNumber": 1, + "AcquisitionTime": "11:37:16.377500", + "BandwidthPerPixelPhaseEncode": 17.17, + "BaseResolution": 104, + "BodyPartExamined": "BRAIN", + "CoilString": "HC1-7;NC1_2", + "ConsistencyInfo": "N4_VE11C_LATEST_20160120", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", + "DerivedVendorReportedEchoSpacing": 0.000560011, + "DeviceSerialNumber": "167006", + "DwellTime": 2.1e-06, + "EchoTime": 0.037, + "EchoTrainLength": 104, + "EffectiveEchoSpacing": 0.000560011, + "FlipAngle": 52, + "ImageComments": "Unaliased_MB4_PE3_LB", + "ImageOrientationPatientDICOM": [0.999903, -0.0114563, 0.00789211, 0.0134386, 0.942103, -0.335055], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagingFrequency": 123.26, + "InPlanePhaseEncodingDirectionDICOM": "COL", + "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", + "InstitutionName": "IUGM", + "InstitutionalDepartmentName": "Department", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma_fit", + "Modality": "MR", + "MultibandAccelerationFactor": 4, + "PartialFourier": 1, + "PatientPosition": "HFS", + "PercentPhaseFOV": 100, + "PhaseEncodingDirection": "j", + "PhaseEncodingSteps": 104, + "PhaseResolution": 1, + "PixelBandwidth": 2290, + "ProcedureStepDescription": "video_friends", + "ProtocolName": "func_task-s01e02b", + "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", + "ReceiveCoilActiveElements": "HC1-7;NC1,2", + "ReceiveCoilName": "HeadNeck_64", + "ReconMatrixPE": 104, + "RepetitionTime": 1.49, + "SAR": 0.0303893, + "ScanOptions": "FS", + "ScanningSequence": "EP", + "SequenceName": "epfid2d1_104", + "SequenceVariant": "SK_SS", + "SeriesDescription": "func_task-s01e02b", + "SeriesNumber": 21, + "ShimSetting": [628, -7170, -8821, 676, 36, 161, 19, -7], + "SliceThickness": 2, + "SliceTiming": [0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685], + "SoftwareVersions": "syngo_MR_E11", + "SpacingBetweenSlices": 2, + "StationName": "MRC35049", + "TaskName": "friends", + "TotalReadoutTime": 0.0576811, + "TxRefAmp": 210.594, + "WipMemBlock": "9a38aea3-0f23-415a-8d91-70cde5528cb7||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "dcmmeta_affine": [ + [-1.9998064041137695, 0.02687716670334339, 0.0071933940052986145, 102.83158874511719], + [0.022912560030817986, 1.8842055797576904, -0.6702569127082825, -78.381103515625], + [0.01578422077000141, 0.6701096892356873, 1.8843311071395874, -71.97803497314453], + [0.0, 0.0, 0.0, 1.0] +], + "dcmmeta_reorient_transform": [ + [0.0, -1.0, 0.0, 103.0], + [1.0, 0.0, 0.0, 0.0], + [0.0, 0.0, 1.0, 0.0], + [0.0, 0.0, 0.0, 1.0] +], + "dcmmeta_shape": [104, 104, 60, 472], + "dcmmeta_slice_dim": 2, + "dcmmeta_version": 0.6, + "global": { + "const": { + "AcquisitionMatrix": [104, 0, 0, 104], + "AngioFlag": "N", + "BitsAllocated": 16, + "BitsStored": 16, + "BodyPartExamined": "BRAIN", + "Columns": 832, + "EchoNumbers": 1, + "EchoTime": 37.0, + "EchoTrainLength": 104, + "FlipAngle": 52.0, + "HighBit": 15, + "ImageOrientationPatient": [0.99990322944334, -0.011456279703, 0.0078921102465, 0.0134385832052, 0.94210278664011, -0.3350548371332], + "ImagePositionPatient": [-843.31277546186, -793.20272661163, 235.21772601953], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagedNucleus": "1H", + "ImagingFrequency": 123.259525, + "InPlanePhaseEncodingDirection": "COL", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3.0, + "Manufacturer": "SIEMENS", + "ManufacturerModelName": "Prisma_fit", + "Modality": "MR", + "NumberOfAverages": 1.0, + "NumberOfPhaseEncodingSteps": 104, + "PercentPhaseFieldOfView": 100.0, + "PercentSampling": 100.0, + "PerformedProcedureStepStartTime": "102922.228000", + "PhotometricInterpretation": "MONOCHROME2", + "PixelBandwidth": 2290.0, + "PixelRepresentation": 0, + "PixelSpacing": [2.0, 2.0], + "ProtocolName": "func_task-s01e02b", + "RepetitionTime": 1490.0, + "Rows": 832, + "SAR": 0.03038934864771, + "SamplesPerPixel": 1, + "ScanOptions": "FS", + "ScanningSequence": "EP", + "SequenceName": "epfid2d1_104", + "SequenceVariant": [ + "SK", + "SS" +], + "SeriesDescription": "func_task-s01e02b", + "SeriesNumber": 21, + "SeriesTime": "113856.851000", + "SliceLocation": -41.177633408466, + "SliceThickness": 2.0, + "SmallestImagePixelValue": 0, + "SoftwareVersions": "syngo MR E11", + "SpacingBetweenSlices": 1.9999999303852, + "SpecificCharacterSet": "ISO_IR 100", + "StudyID": "1", + "StudyTime": "102922.156000", + "TransmitCoilName": "Body", + "VariableFlipAngleFlag": "N", + "WindowCenterWidthExplanation": "Algo1", + "dBdt": 0.0}, + "slices": {} + }, + "time": { + "samples": { + "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 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+../../../.git/annex/objects/3P/PP/SHA256E-s495806089--a3c0a85e0db53875df575f3e79f422ac66da943eb977eda2f87f17540047ae92.nii.gz/SHA256E-s495806089--a3c0a85e0db53875df575f3e79f422ac66da943eb977eda2f87f17540047ae92.nii.gz \ No newline at end of file diff --git a/sub-03/ses-001/func/sub-03_ses-001_task-s01e06a_sbref.json b/sub-03/ses-001/func/sub-03_ses-001_task-s01e03b_sbref.json similarity index 66% rename from sub-03/ses-001/func/sub-03_ses-001_task-s01e06a_sbref.json rename to sub-03/ses-001/func/sub-03_ses-001_task-s01e03b_sbref.json index 2c66e71cb5c..c21b17e338a 100644 --- a/sub-03/ses-001/func/sub-03_ses-001_task-s01e06a_sbref.json +++ b/sub-03/ses-001/func/sub-03_ses-001_task-s01e03b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "10:50:53.715000", + "AcquisitionTime": "11:37:5.947500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -17,7 +17,7 @@ "EffectiveEchoSpacing": 0.000560011, "FlipAngle": 52, "ImageComments": "Single-band_reference", - "ImageOrientationPatientDICOM": [0.999761, -0.0217194, -0.00255173, 0.0195455, 0.939782, -0.341215], + "ImageOrientationPatientDICOM": [0.999903, -0.0114563, 0.00789211, 0.0134386, 0.942103, -0.335055], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -43,33 +43,33 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e01a_SBRef", + "ProtocolName": "func_task-s01e02b_SBRef", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0289769, + "SAR": 0.0303893, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e01a_SBRef", - "SeriesNumber": 8, - "ShimSetting": [621, -7161, -8818, 671, 12, 161, 33, -3], + "SeriesDescription": "func_task-s01e02b_SBRef", + "SeriesNumber": 20, + "ShimSetting": [628, -7170, -8821, 676, 36, 161, 19, -7], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.1975, 0.295, 0.3925, 0.49, 0.5875, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.135, 3.235, 3.3325, 3.43, 3.5275, 3.625, 3.725, 3.8225, 3.92, 4.0175, 4.115, 4.215, 4.3125, 4.41, 4.5075, 4.605, 4.705, 4.8025, 4.9, 4.9975, 5.095, 5.195, 5.2925, 5.39, 5.4875, 5.585, 5.685, 5.7825], + "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.4475, 2.5475, 2.645, 2.7425, 2.84, 2.9375, 3.0375, 3.135, 3.2325, 3.33, 3.4275, 3.5275, 3.625, 3.7225, 3.82, 3.9175, 4.0175, 4.115, 4.2125, 4.31, 4.4075, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, - "TxRefAmp": 208.509, - "WipMemBlock": "e5811c92-2ed3-4cb9-a208-d37e83422976||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "TxRefAmp": 210.594, + "WipMemBlock": "9a38aea3-0f23-415a-8d91-70cde5528cb7||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ - [-1.9995217323303223, 0.039090968668460846, -0.019618121907114983, 102.92753601074219], - [0.04343879967927933, 1.879563808441162, -0.6821679472923279, -79.03658294677734], - [-0.00510345259681344, 0.6824308633804321, 1.8799632787704468, -71.64566040039062], + [-1.9998064041137695, 0.02687716670334339, 0.0071933940052986145, 102.83158874511719], + [0.022912560030817986, 1.8842055797576904, -0.6702569127082825, -78.381103515625], + [0.01578422077000141, 0.6701096892356873, 1.8843311071395874, -71.97803497314453], [0.0, 0.0, 0.0, 1.0] ], "dcmmeta_reorient_transform": [ @@ -85,20 +85,20 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "105053.715000", + "AcquisitionTime": "113705.947500", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "105224.645000", + "ContentTime": "113856.830000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, "FlipAngle": 52.0, "HighBit": 15, - "ImageOrientationPatient": [0.99976084958517, -0.0217193998415, -0.0025517263303, 0.01954548451599, 0.93978188941067, -0.3412154368881], - "ImagePositionPatient": [-849.00891936439, -782.90797980119, 248.90721268957], + "ImageOrientationPatient": [0.99990322944334, -0.011456279703, 0.0078921102465, 0.0134385832052, 0.94210278664011, -0.3350548371332], + "ImagePositionPatient": [-843.31277546186, -793.20272661163, 235.21772601953], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259509, + "ImagingFrequency": 123.259525, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "105224.645000", + "InstanceCreationTime": "113856.830000", "InstanceNumber": 1, - "LargestImagePixelValue": 59311, + "LargestImagePixelValue": 56130, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e01a_SBRef", + "ProtocolName": "func_task-s01e02b_SBRef", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.02897690679212, + "SAR": 0.03038934864771, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,22 +138,22 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e01a_SBRef", - "SeriesNumber": 8, - "SeriesTime": "105224.641000", - "SliceLocation": -41.397120293471, + "SeriesDescription": "func_task-s01e02b_SBRef", + "SeriesNumber": 20, + "SeriesTime": "113856.827000", + "SliceLocation": -41.177633408466, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, "SoftwareVersions": "syngo MR E11", - "SpacingBetweenSlices": 1.9999999985283, + "SpacingBetweenSlices": 1.9999999303852, "SpecificCharacterSet": "ISO_IR 100", "StudyID": "1", "StudyTime": "102922.156000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 11875.0, + "WindowCenter": 11665.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 25291.0, + "WindowWidth": 24655.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-03/ses-001/func/sub-03_ses-001_task-s01e03b_sbref.nii.gz b/sub-03/ses-001/func/sub-03_ses-001_task-s01e03b_sbref.nii.gz new file mode 120000 index 00000000000..ff3083eb19c --- /dev/null +++ b/sub-03/ses-001/func/sub-03_ses-001_task-s01e03b_sbref.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/fV/zJ/SHA256E-s1085953--3f726b1283c6686f1171140d1874e8e4f4336448c705914b3cbf69939916087a.nii.gz/SHA256E-s1085953--3f726b1283c6686f1171140d1874e8e4f4336448c705914b3cbf69939916087a.nii.gz \ No newline at end of file diff --git a/sub-03/ses-001/func/sub-03_ses-001_task-s01e06a_bold.json b/sub-03/ses-001/func/sub-03_ses-001_task-s01e06a_bold.json deleted file mode 100644 index 64f478280a4..00000000000 --- a/sub-03/ses-001/func/sub-03_ses-001_task-s01e06a_bold.json +++ /dev/null @@ -1,168 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "10:51:4.145000", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": "167006", - 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-../../../.git/annex/objects/Vj/gF/SHA256E-s1086564--60948898b17e6e0374ae7d6c966e7c15249f6c1388953c23119e52c30f8c06b2.nii.gz/SHA256E-s1086564--60948898b17e6e0374ae7d6c966e7c15249f6c1388953c23119e52c30f8c06b2.nii.gz \ No newline at end of file diff --git a/sub-03/ses-002/func/sub-03_ses-002_task-s01e03a_bold.json b/sub-03/ses-002/func/sub-03_ses-002_task-s01e03a_bold.json deleted file mode 100644 index a7f9d8332ca..00000000000 --- a/sub-03/ses-002/func/sub-03_ses-002_task-s01e03a_bold.json +++ /dev/null @@ -1,168 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "14:50:33.250000", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": "167006", - 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-../../../.git/annex/objects/Z6/1Z/SHA256E-s527875105--d8db89ce90629d6b57ecbd71d3560fe18a867e18373e1014167fb9fed0aa34fe.nii.gz/SHA256E-s527875105--d8db89ce90629d6b57ecbd71d3560fe18a867e18373e1014167fb9fed0aa34fe.nii.gz \ No newline at end of file diff --git a/sub-03/ses-002/func/sub-03_ses-002_task-s01e03b_sbref.nii.gz b/sub-03/ses-002/func/sub-03_ses-002_task-s01e03b_sbref.nii.gz deleted file mode 120000 index 8d92b13a8f4..00000000000 --- a/sub-03/ses-002/func/sub-03_ses-002_task-s01e03b_sbref.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/MJ/KQ/SHA256E-s1086670--a5fe4c6760e2264091bc940796a03a5ec98f52aec6c5c2198234517e291b970c.nii.gz/SHA256E-s1086670--a5fe4c6760e2264091bc940796a03a5ec98f52aec6c5c2198234517e291b970c.nii.gz \ No newline at end of file diff --git a/sub-03/ses-002/func/sub-03_ses-002_task-s01e04a_bold.json b/sub-03/ses-002/func/sub-03_ses-002_task-s01e04a_bold.json index df00710fbcc..a7f9d8332ca 100644 --- a/sub-03/ses-002/func/sub-03_ses-002_task-s01e04a_bold.json +++ b/sub-03/ses-002/func/sub-03_ses-002_task-s01e04a_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "15:16:29.215000", + "AcquisitionTime": "14:50:33.250000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -45,29 +45,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e04a", + "ProtocolName": "func_task-s01e03a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0327794, + "SAR": 0.032789, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e04a", - "SeriesNumber": 12, + "SeriesDescription": "func_task-s01e03a", + "SeriesNumber": 8, "ShimSetting": [622, -7208, -8791, 686, 4, -1, -13, 10], "SliceThickness": 2, - "SliceTiming": [0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685], + "SliceTiming": [0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 211.896, - "WipMemBlock": "58c9f9cc-6038-4691-beae-3fc271fba674||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "6b8e4ad8-89f1-4972-a66d-bcb66a9fc604||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9982823133468628, 0.08235550671815872, -0.009242396801710129, 100.47441864013672], [0.0811074897646904, 1.897733449935913, -0.6261222958564758, -83.40318298339844], @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 468], + "dcmmeta_shape": [104, 104, 60, 503], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259169, + "ImagingFrequency": 123.259162, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e04a", + "ProtocolName": "func_task-s01e03a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03277938832469, + "SAR": 0.03278902671218, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,9 +135,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e04a", - "SeriesNumber": 12, - "SeriesTime": "151758.927000", + "SeriesDescription": "func_task-s01e03a", + "SeriesNumber": 8, + "SeriesTime": "145157.081000", "SliceLocation": -33.947641863073, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -154,14 +154,14 @@ }, "time": { "samples": { - "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 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b/sub-03/ses-002/func/sub-03_ses-002_task-s01e04a_bold.nii.gz index ab501aead04..4cae4565ae4 120000 --- a/sub-03/ses-002/func/sub-03_ses-002_task-s01e04a_bold.nii.gz +++ b/sub-03/ses-002/func/sub-03_ses-002_task-s01e04a_bold.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/M7/q3/SHA256E-s491657450--63ceb6cf0027542f25350a1ab2d84edd6d4aa65074daef3eb57fb080e00bf6d3.nii.gz/SHA256E-s491657450--63ceb6cf0027542f25350a1ab2d84edd6d4aa65074daef3eb57fb080e00bf6d3.nii.gz \ No newline at end of file +../../../.git/annex/objects/qF/1K/SHA256E-s527807961--0a9b1507ced302923a4e6074a7f70b2d32d90259b2e5f87bcbfc132ba6d680e7.nii.gz/SHA256E-s527807961--0a9b1507ced302923a4e6074a7f70b2d32d90259b2e5f87bcbfc132ba6d680e7.nii.gz \ No newline at end of file diff --git a/sub-03/ses-002/func/sub-03_ses-002_task-s01e04a_sbref.json b/sub-03/ses-002/func/sub-03_ses-002_task-s01e04a_sbref.json index 1f179fada56..d6ad71fa63f 100644 --- a/sub-03/ses-002/func/sub-03_ses-002_task-s01e04a_sbref.json +++ b/sub-03/ses-002/func/sub-03_ses-002_task-s01e04a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "15:16:18.785000", + "AcquisitionTime": "14:50:22.820000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e04a_SBRef", + "ProtocolName": "func_task-s01e03a_SBRef", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0327794, + "SAR": 0.032789, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e04a_SBRef", - "SeriesNumber": 11, + "SeriesDescription": "func_task-s01e03a_SBRef", + "SeriesNumber": 7, "ShimSetting": [622, -7208, -8791, 686, 4, -1, -13, 10], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.45, 2.5475, 2.645, 2.7425, 2.84, 2.94, 3.0375, 3.135, 3.2325, 3.33, 3.43, 3.5275, 3.625, 3.7225, 3.82, 3.92, 4.0175, 4.115, 4.2125, 4.31, 4.41, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78], + "SliceTiming": [0, 0.0975, 0.1975, 0.295, 0.3925, 0.49, 0.5875, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.605, 4.705, 4.8025, 4.9, 4.9975, 5.095, 5.195, 5.2925, 5.39, 5.4875, 5.585, 5.685, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 211.896, - "WipMemBlock": "58c9f9cc-6038-4691-beae-3fc271fba674||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "6b8e4ad8-89f1-4972-a66d-bcb66a9fc604||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9982823133468628, 0.08235550671815872, -0.009242396801710129, 100.47441864013672], [0.0811074897646904, 1.897733449935913, -0.6261222958564758, -83.40318298339844], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "151618.785000", + "AcquisitionTime": "145022.820000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "151758.904000", + "ContentTime": "145157.051000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259169, + "ImagingFrequency": 123.259162, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "151758.904000", + "InstanceCreationTime": "145157.051000", "InstanceNumber": 1, - "LargestImagePixelValue": 52706, + "LargestImagePixelValue": 55533, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e04a_SBRef", + "ProtocolName": "func_task-s01e03a_SBRef", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03277938832469, + "SAR": 0.03278902671218, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e04a_SBRef", - "SeriesNumber": 11, - "SeriesTime": "151758.900000", + "SeriesDescription": "func_task-s01e03a_SBRef", + "SeriesNumber": 7, + "SeriesTime": "145157.048000", "SliceLocation": -33.947641863073, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "144604.979000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 11708.0, + "WindowCenter": 11932.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 24841.0, + "WindowWidth": 25436.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-03/ses-002/func/sub-03_ses-002_task-s01e04a_sbref.nii.gz b/sub-03/ses-002/func/sub-03_ses-002_task-s01e04a_sbref.nii.gz index ad08d5795bc..498951f500e 120000 --- a/sub-03/ses-002/func/sub-03_ses-002_task-s01e04a_sbref.nii.gz +++ b/sub-03/ses-002/func/sub-03_ses-002_task-s01e04a_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/GM/g3/SHA256E-s1086563--64ecefc0877d858c87eee2bc0f9dd8a0dfda966bf0e71149029cff75e48d388e.nii.gz/SHA256E-s1086563--64ecefc0877d858c87eee2bc0f9dd8a0dfda966bf0e71149029cff75e48d388e.nii.gz \ No newline at end of file +../../../.git/annex/objects/mZ/zJ/SHA256E-s1086140--8c767ac21bc8ba6c158ee72e5440f042d468e9916791718a8c3ed637125c0ab5.nii.gz/SHA256E-s1086140--8c767ac21bc8ba6c158ee72e5440f042d468e9916791718a8c3ed637125c0ab5.nii.gz \ No newline at end of file diff --git a/sub-03/ses-002/func/sub-03_ses-002_task-s01e04b_bold.json b/sub-03/ses-002/func/sub-03_ses-002_task-s01e04b_bold.json index d9885ddeba0..bce5a03d34b 100644 --- a/sub-03/ses-002/func/sub-03_ses-002_task-s01e04b_bold.json +++ b/sub-03/ses-002/func/sub-03_ses-002_task-s01e04b_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "15:28:48.367500", + "AcquisitionTime": "15:03:33.510000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -45,29 +45,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e04b", + "ProtocolName": "func_task-s01e03b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0327794, + "SAR": 0.032789, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e04b", - "SeriesNumber": 14, + "SeriesDescription": "func_task-s01e03b", + "SeriesNumber": 10, "ShimSetting": [622, -7208, -8791, 686, 4, -1, -13, 10], "SliceThickness": 2, - "SliceTiming": [0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685], + "SliceTiming": [0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 211.896, - "WipMemBlock": "401f8e44-280d-4a1a-a016-610ac7f0c435||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "c8210ca9-a7c4-449b-8f89-8a257b4f8aa7||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9982823133468628, 0.08235550671815872, -0.009242396801710129, 100.47441864013672], [0.0811074897646904, 1.897733449935913, -0.6261222958564758, -83.40318298339844], @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 468], + "dcmmeta_shape": [104, 104, 60, 503], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259171, + "ImagingFrequency": 123.259166, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e04b", + "ProtocolName": "func_task-s01e03b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03277938832469, + "SAR": 0.03278902671218, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,9 +135,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e04b", - "SeriesNumber": 14, - "SeriesTime": "153017.083000", + "SeriesDescription": "func_task-s01e03b", + "SeriesNumber": 10, + "SeriesTime": "150458.866000", "SliceLocation": -33.947641863073, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -154,14 +154,14 @@ }, "time": { "samples": { - "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259, 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272, 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285, 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324, 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337, 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350, 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363, 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376, 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389, 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20923.0, 20904.0, 20891.0, 20923.0, 20935.0, 20928.0, 20897.0, 20893.0, 20895.0, 20947.0, 20954.0, 20938.0, 20926.0, 20921.0, 20900.0, 20894.0, 20900.0, 20900.0, 20910.0, 20903.0, 20915.0, 20935.0, 20926.0, 20923.0, 20929.0, 20937.0, 20913.0, 20908.0, 20892.0, 20901.0, 20895.0, 20891.0] }, "slices": {} } diff --git a/sub-03/ses-002/func/sub-03_ses-002_task-s01e04b_bold.nii.gz b/sub-03/ses-002/func/sub-03_ses-002_task-s01e04b_bold.nii.gz index 85285fbae95..99cd955b327 120000 --- a/sub-03/ses-002/func/sub-03_ses-002_task-s01e04b_bold.nii.gz +++ b/sub-03/ses-002/func/sub-03_ses-002_task-s01e04b_bold.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/66/p9/SHA256E-s491830369--33160d62deaacd801d556a2be58f0a5ff22002c6705eb6651ff21ad63c0e0da9.nii.gz/SHA256E-s491830369--33160d62deaacd801d556a2be58f0a5ff22002c6705eb6651ff21ad63c0e0da9.nii.gz \ No newline at end of file +../../../.git/annex/objects/Z6/1Z/SHA256E-s527875105--d8db89ce90629d6b57ecbd71d3560fe18a867e18373e1014167fb9fed0aa34fe.nii.gz/SHA256E-s527875105--d8db89ce90629d6b57ecbd71d3560fe18a867e18373e1014167fb9fed0aa34fe.nii.gz \ No newline at end of file diff --git a/sub-03/ses-002/func/sub-03_ses-002_task-s01e04b_sbref.json b/sub-03/ses-002/func/sub-03_ses-002_task-s01e04b_sbref.json index a58f94e0c59..10453127586 100644 --- a/sub-03/ses-002/func/sub-03_ses-002_task-s01e04b_sbref.json +++ b/sub-03/ses-002/func/sub-03_ses-002_task-s01e04b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "15:28:37.937500", + "AcquisitionTime": "15:03:23.080000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e04b_SBRef", + "ProtocolName": "func_task-s01e03b_SBRef", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0327794, + "SAR": 0.032789, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e04b_SBRef", - "SeriesNumber": 13, + "SeriesDescription": "func_task-s01e03b_SBRef", + "SeriesNumber": 9, "ShimSetting": [622, -7208, -8791, 686, 4, -1, -13, 10], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.4675, 1.5675, 1.665, 1.7625, 1.86, 1.9575, 2.0575, 2.155, 2.2525, 2.35, 2.4475, 2.5475, 2.645, 2.7425, 2.84, 2.9375, 3.0375, 3.135, 3.2325, 3.33, 3.4275, 3.5275, 3.625, 3.7225, 3.82, 3.9175, 4.0175, 4.115, 4.2125, 4.31, 4.4075, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78], + "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.3925, 0.49, 0.5875, 0.685, 0.7825, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.31, 4.41, 4.5075, 4.605, 4.7025, 4.8, 4.9, 4.9975, 5.095, 5.1925, 5.29, 5.39, 5.4875, 5.585, 5.6825, 5.78], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 211.896, - "WipMemBlock": "401f8e44-280d-4a1a-a016-610ac7f0c435||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "c8210ca9-a7c4-449b-8f89-8a257b4f8aa7||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9982823133468628, 0.08235550671815872, -0.009242396801710129, 100.47441864013672], [0.0811074897646904, 1.897733449935913, -0.6261222958564758, -83.40318298339844], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "152837.937500", + "AcquisitionTime": "150323.080000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "153017.051000", + "ContentTime": "150458.834000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259171, + "ImagingFrequency": 123.259166, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "153017.051000", + "InstanceCreationTime": "150458.834000", "InstanceNumber": 1, - "LargestImagePixelValue": 55295, + "LargestImagePixelValue": 52599, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e04b_SBRef", + "ProtocolName": "func_task-s01e03b_SBRef", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03277938832469, + "SAR": 0.03278902671218, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e04b_SBRef", - "SeriesNumber": 13, - "SeriesTime": "153017.048000", + "SeriesDescription": "func_task-s01e03b_SBRef", + "SeriesNumber": 9, + "SeriesTime": "150458.830000", "SliceLocation": -33.947641863073, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "144604.979000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 11791.0, + "WindowCenter": 11799.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 25023.0, + "WindowWidth": 25102.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-03/ses-002/func/sub-03_ses-002_task-s01e04b_sbref.nii.gz b/sub-03/ses-002/func/sub-03_ses-002_task-s01e04b_sbref.nii.gz index ec5f4640e67..8d92b13a8f4 120000 --- a/sub-03/ses-002/func/sub-03_ses-002_task-s01e04b_sbref.nii.gz +++ b/sub-03/ses-002/func/sub-03_ses-002_task-s01e04b_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/2x/zG/SHA256E-s1087333--a6eea228ddf75571fe84e480818fde32bec5b0d89439e504add242cbb74f7962.nii.gz/SHA256E-s1087333--a6eea228ddf75571fe84e480818fde32bec5b0d89439e504add242cbb74f7962.nii.gz \ No newline at end of file +../../../.git/annex/objects/MJ/KQ/SHA256E-s1086670--a5fe4c6760e2264091bc940796a03a5ec98f52aec6c5c2198234517e291b970c.nii.gz/SHA256E-s1086670--a5fe4c6760e2264091bc940796a03a5ec98f52aec6c5c2198234517e291b970c.nii.gz \ No newline at end of file diff --git a/sub-03/ses-002/func/sub-03_ses-002_task-s01e05a_bold.json b/sub-03/ses-002/func/sub-03_ses-002_task-s01e05a_bold.json new file mode 100644 index 00000000000..df00710fbcc --- /dev/null +++ b/sub-03/ses-002/func/sub-03_ses-002_task-s01e05a_bold.json @@ -0,0 +1,168 @@ +{ + "AcquisitionMatrixPE": 104, + "AcquisitionNumber": 1, + "AcquisitionTime": "15:16:29.215000", + "BandwidthPerPixelPhaseEncode": 17.17, + "BaseResolution": 104, + "BodyPartExamined": "BRAIN", + "CoilString": "HC1-7;NC1_2", + "ConsistencyInfo": "N4_VE11C_LATEST_20160120", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", + "DerivedVendorReportedEchoSpacing": 0.000560011, + "DeviceSerialNumber": "167006", + "DwellTime": 2.1e-06, + "EchoTime": 0.037, + "EchoTrainLength": 104, + "EffectiveEchoSpacing": 0.000560011, + "FlipAngle": 52, + "ImageComments": "Unaliased_MB4_PE3_LB", + "ImageOrientationPatientDICOM": [0.999141, -0.0405537, 0.00850625, 0.0411778, 0.948867, -0.31298], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagingFrequency": 123.259, + "InPlanePhaseEncodingDirectionDICOM": "COL", + "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", + 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20933.0, 20906.0, 20861.0, 20821.0, 20817.0, 20851.0, 20871.0, 20873.0, 20859.0, 20884.0, 20916.0, 20919.0, 20894.0, 20832.0, 20794.0, 20804.0, 20830.0, 20860.0, 20874.0, 20857.0, 20833.0, 20815.0, 20810.0, 20832.0, 20854.0, 20846.0, 20866.0, 20885.0, 20879.0, 20884.0, 20892.0, 20910.0, 20903.0, 20880.0, 20875.0, 20859.0, 20836.0] + }, + "slices": {} + } +} \ No newline at end of file diff --git a/sub-03/ses-002/func/sub-03_ses-002_task-s01e05a_bold.nii.gz b/sub-03/ses-002/func/sub-03_ses-002_task-s01e05a_bold.nii.gz new file mode 120000 index 00000000000..ab501aead04 --- /dev/null +++ b/sub-03/ses-002/func/sub-03_ses-002_task-s01e05a_bold.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/M7/q3/SHA256E-s491657450--63ceb6cf0027542f25350a1ab2d84edd6d4aa65074daef3eb57fb080e00bf6d3.nii.gz/SHA256E-s491657450--63ceb6cf0027542f25350a1ab2d84edd6d4aa65074daef3eb57fb080e00bf6d3.nii.gz \ No newline at end of file diff --git a/sub-03/ses-002/func/sub-03_ses-002_task-s01e03b_sbref.json b/sub-03/ses-002/func/sub-03_ses-002_task-s01e05a_sbref.json similarity index 79% rename from sub-03/ses-002/func/sub-03_ses-002_task-s01e03b_sbref.json rename to sub-03/ses-002/func/sub-03_ses-002_task-s01e05a_sbref.json index 10453127586..1f179fada56 100644 --- a/sub-03/ses-002/func/sub-03_ses-002_task-s01e03b_sbref.json +++ b/sub-03/ses-002/func/sub-03_ses-002_task-s01e05a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "15:03:23.080000", + "AcquisitionTime": "15:16:18.785000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e03b_SBRef", + "ProtocolName": "func_task-s01e04a_SBRef", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.032789, + "SAR": 0.0327794, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e03b_SBRef", - "SeriesNumber": 9, + "SeriesDescription": "func_task-s01e04a_SBRef", + "SeriesNumber": 11, "ShimSetting": [622, -7208, -8791, 686, 4, -1, -13, 10], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.3925, 0.49, 0.5875, 0.685, 0.7825, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.31, 4.41, 4.5075, 4.605, 4.7025, 4.8, 4.9, 4.9975, 5.095, 5.1925, 5.29, 5.39, 5.4875, 5.585, 5.6825, 5.78], + "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.45, 2.5475, 2.645, 2.7425, 2.84, 2.94, 3.0375, 3.135, 3.2325, 3.33, 3.43, 3.5275, 3.625, 3.7225, 3.82, 3.92, 4.0175, 4.115, 4.2125, 4.31, 4.41, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 211.896, - "WipMemBlock": "c8210ca9-a7c4-449b-8f89-8a257b4f8aa7||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "58c9f9cc-6038-4691-beae-3fc271fba674||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9982823133468628, 0.08235550671815872, -0.009242396801710129, 100.47441864013672], [0.0811074897646904, 1.897733449935913, -0.6261222958564758, -83.40318298339844], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "150323.080000", + "AcquisitionTime": "151618.785000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "150458.834000", + "ContentTime": "151758.904000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259166, + "ImagingFrequency": 123.259169, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "150458.834000", + "InstanceCreationTime": "151758.904000", "InstanceNumber": 1, - "LargestImagePixelValue": 52599, + "LargestImagePixelValue": 52706, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e03b_SBRef", + "ProtocolName": "func_task-s01e04a_SBRef", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03278902671218, + "SAR": 0.03277938832469, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e03b_SBRef", - "SeriesNumber": 9, - "SeriesTime": "150458.830000", + "SeriesDescription": "func_task-s01e04a_SBRef", + "SeriesNumber": 11, + "SeriesTime": "151758.900000", "SliceLocation": -33.947641863073, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "144604.979000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 11799.0, + "WindowCenter": 11708.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 25102.0, + "WindowWidth": 24841.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-03/ses-002/func/sub-03_ses-002_task-s01e05a_sbref.nii.gz b/sub-03/ses-002/func/sub-03_ses-002_task-s01e05a_sbref.nii.gz new file mode 120000 index 00000000000..ad08d5795bc --- /dev/null +++ b/sub-03/ses-002/func/sub-03_ses-002_task-s01e05a_sbref.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/GM/g3/SHA256E-s1086563--64ecefc0877d858c87eee2bc0f9dd8a0dfda966bf0e71149029cff75e48d388e.nii.gz/SHA256E-s1086563--64ecefc0877d858c87eee2bc0f9dd8a0dfda966bf0e71149029cff75e48d388e.nii.gz \ No newline at end of file diff --git a/sub-03/ses-002/func/sub-03_ses-002_task-s01e05b_bold.json b/sub-03/ses-002/func/sub-03_ses-002_task-s01e05b_bold.json new file mode 100644 index 00000000000..d9885ddeba0 --- /dev/null +++ b/sub-03/ses-002/func/sub-03_ses-002_task-s01e05b_bold.json @@ -0,0 +1,168 @@ +{ + "AcquisitionMatrixPE": 104, + "AcquisitionNumber": 1, + "AcquisitionTime": "15:28:48.367500", + "BandwidthPerPixelPhaseEncode": 17.17, + "BaseResolution": 104, + "BodyPartExamined": "BRAIN", + "CoilString": "HC1-7;NC1_2", + "ConsistencyInfo": "N4_VE11C_LATEST_20160120", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", + "DerivedVendorReportedEchoSpacing": 0.000560011, + "DeviceSerialNumber": "167006", + "DwellTime": 2.1e-06, + "EchoTime": 0.037, + "EchoTrainLength": 104, + "EffectiveEchoSpacing": 0.000560011, + "FlipAngle": 52, + "ImageComments": "Unaliased_MB4_PE3_LB", + "ImageOrientationPatientDICOM": [0.999141, -0.0405537, 0.00850625, 0.0411778, 0.948867, -0.31298], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagingFrequency": 123.259, + "InPlanePhaseEncodingDirectionDICOM": "COL", + "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", + "InstitutionName": "IUGM", + "InstitutionalDepartmentName": "Department", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma_fit", + "Modality": "MR", + "MultibandAccelerationFactor": 4, + "PartialFourier": 1, + "PatientPosition": "HFS", + "PercentPhaseFOV": 100, + "PhaseEncodingDirection": "j", + "PhaseEncodingSteps": 104, + "PhaseResolution": 1, + "PixelBandwidth": 2290, + "ProcedureStepDescription": "video_friends", + "ProtocolName": "func_task-s01e04b", + "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", + "ReceiveCoilActiveElements": "HC1-7;NC1,2", + "ReceiveCoilName": "HeadNeck_64", + "ReconMatrixPE": 104, + "RepetitionTime": 1.49, + "SAR": 0.0327794, + "ScanOptions": "FS", + "ScanningSequence": "EP", + "SequenceName": "epfid2d1_104", + "SequenceVariant": "SK_SS", + "SeriesDescription": "func_task-s01e04b", + "SeriesNumber": 14, + "ShimSetting": [622, -7208, -8791, 686, 4, -1, -13, 10], + "SliceThickness": 2, + "SliceTiming": [0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685], + "SoftwareVersions": "syngo_MR_E11", + "SpacingBetweenSlices": 2, + "StationName": "MRC35049", + "TaskName": "friends", + "TotalReadoutTime": 0.0576811, + "TxRefAmp": 211.896, + "WipMemBlock": "401f8e44-280d-4a1a-a016-610ac7f0c435||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "dcmmeta_affine": [ + [-1.9982823133468628, 0.08235550671815872, -0.009242396801710129, 100.47441864013672], + [0.0811074897646904, 1.897733449935913, -0.6261222958564758, -83.40318298339844], + [0.01701250672340393, 0.6259593963623047, 1.8994433879852295, -62.748512268066406], + [0.0, 0.0, 0.0, 1.0] +], + "dcmmeta_reorient_transform": [ + [0.0, -1.0, 0.0, 103.0], + [1.0, 0.0, 0.0, 0.0], + [0.0, 0.0, 1.0, 0.0], + [0.0, 0.0, 0.0, 1.0] +], + "dcmmeta_shape": [104, 104, 60, 468], + "dcmmeta_slice_dim": 2, + "dcmmeta_version": 0.6, + "global": { + "const": { + "AcquisitionMatrix": [104, 0, 0, 104], + "AngioFlag": "N", + "BitsAllocated": 16, + "BitsStored": 16, + "BodyPartExamined": "BRAIN", + "Columns": 832, + "EchoNumbers": 1, + "EchoTime": 37.0, + "EchoTrainLength": 104, + "FlipAngle": 52.0, + "HighBit": 15, + "ImageOrientationPatient": [0.99914114984187, -0.0405537464282, 0.00850625318811, 0.04117775150273, 0.94886674750986, -0.3129796930333], + "ImagePositionPatient": [-866.30919740966, -773.31523472526, 223.38196817438], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagedNucleus": "1H", + "ImagingFrequency": 123.259171, + "InPlanePhaseEncodingDirection": "COL", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3.0, + "Manufacturer": "SIEMENS", + "ManufacturerModelName": "Prisma_fit", + "Modality": "MR", + "NumberOfAverages": 1.0, + "NumberOfPhaseEncodingSteps": 104, + "PercentPhaseFieldOfView": 100.0, + "PercentSampling": 100.0, + "PerformedProcedureStepStartTime": "144605.065000", + "PhotometricInterpretation": "MONOCHROME2", + "PixelBandwidth": 2290.0, + "PixelRepresentation": 0, + "PixelSpacing": [2.0, 2.0], + "ProtocolName": "func_task-s01e04b", + 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b/sub-03/ses-002/func/sub-03_ses-002_task-s01e05b_bold.nii.gz new file mode 120000 index 00000000000..85285fbae95 --- /dev/null +++ b/sub-03/ses-002/func/sub-03_ses-002_task-s01e05b_bold.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/66/p9/SHA256E-s491830369--33160d62deaacd801d556a2be58f0a5ff22002c6705eb6651ff21ad63c0e0da9.nii.gz/SHA256E-s491830369--33160d62deaacd801d556a2be58f0a5ff22002c6705eb6651ff21ad63c0e0da9.nii.gz \ No newline at end of file diff --git a/sub-03/ses-002/func/sub-03_ses-002_task-s01e03a_sbref.json b/sub-03/ses-002/func/sub-03_ses-002_task-s01e05b_sbref.json similarity index 79% rename from sub-03/ses-002/func/sub-03_ses-002_task-s01e03a_sbref.json rename to sub-03/ses-002/func/sub-03_ses-002_task-s01e05b_sbref.json index d6ad71fa63f..a58f94e0c59 100644 --- a/sub-03/ses-002/func/sub-03_ses-002_task-s01e03a_sbref.json +++ b/sub-03/ses-002/func/sub-03_ses-002_task-s01e05b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "14:50:22.820000", + "AcquisitionTime": "15:28:37.937500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e03a_SBRef", + "ProtocolName": "func_task-s01e04b_SBRef", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.032789, + "SAR": 0.0327794, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e03a_SBRef", - "SeriesNumber": 7, + "SeriesDescription": "func_task-s01e04b_SBRef", + "SeriesNumber": 13, "ShimSetting": [622, -7208, -8791, 686, 4, -1, -13, 10], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.1975, 0.295, 0.3925, 0.49, 0.5875, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.605, 4.705, 4.8025, 4.9, 4.9975, 5.095, 5.195, 5.2925, 5.39, 5.4875, 5.585, 5.685, 5.7825], + "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.4675, 1.5675, 1.665, 1.7625, 1.86, 1.9575, 2.0575, 2.155, 2.2525, 2.35, 2.4475, 2.5475, 2.645, 2.7425, 2.84, 2.9375, 3.0375, 3.135, 3.2325, 3.33, 3.4275, 3.5275, 3.625, 3.7225, 3.82, 3.9175, 4.0175, 4.115, 4.2125, 4.31, 4.4075, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 211.896, - "WipMemBlock": "6b8e4ad8-89f1-4972-a66d-bcb66a9fc604||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "401f8e44-280d-4a1a-a016-610ac7f0c435||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9982823133468628, 0.08235550671815872, -0.009242396801710129, 100.47441864013672], [0.0811074897646904, 1.897733449935913, -0.6261222958564758, -83.40318298339844], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "145022.820000", + "AcquisitionTime": "152837.937500", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "145157.051000", + "ContentTime": "153017.051000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259162, + "ImagingFrequency": 123.259171, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "145157.051000", + "InstanceCreationTime": "153017.051000", "InstanceNumber": 1, - "LargestImagePixelValue": 55533, + "LargestImagePixelValue": 55295, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e03a_SBRef", + "ProtocolName": "func_task-s01e04b_SBRef", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03278902671218, + "SAR": 0.03277938832469, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e03a_SBRef", - "SeriesNumber": 7, - "SeriesTime": "145157.048000", + "SeriesDescription": "func_task-s01e04b_SBRef", + "SeriesNumber": 13, + "SeriesTime": "153017.048000", "SliceLocation": -33.947641863073, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "144604.979000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 11932.0, + "WindowCenter": 11791.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 25436.0, + "WindowWidth": 25023.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-03/ses-002/func/sub-03_ses-002_task-s01e05b_sbref.nii.gz b/sub-03/ses-002/func/sub-03_ses-002_task-s01e05b_sbref.nii.gz new file mode 120000 index 00000000000..ec5f4640e67 --- /dev/null +++ b/sub-03/ses-002/func/sub-03_ses-002_task-s01e05b_sbref.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/2x/zG/SHA256E-s1087333--a6eea228ddf75571fe84e480818fde32bec5b0d89439e504add242cbb74f7962.nii.gz/SHA256E-s1087333--a6eea228ddf75571fe84e480818fde32bec5b0d89439e504add242cbb74f7962.nii.gz \ No newline at end of file diff --git a/sub-03/ses-003/func/sub-03_ses-003_task-s01e05a_bold.json b/sub-03/ses-003/func/sub-03_ses-003_task-s01e06a_bold.json similarity index 100% rename from sub-03/ses-003/func/sub-03_ses-003_task-s01e05a_bold.json rename to sub-03/ses-003/func/sub-03_ses-003_task-s01e06a_bold.json diff --git a/sub-03/ses-003/func/sub-03_ses-003_task-s01e05a_bold.nii.gz b/sub-03/ses-003/func/sub-03_ses-003_task-s01e06a_bold.nii.gz similarity index 100% rename from sub-03/ses-003/func/sub-03_ses-003_task-s01e05a_bold.nii.gz rename to sub-03/ses-003/func/sub-03_ses-003_task-s01e06a_bold.nii.gz diff --git a/sub-03/ses-003/func/sub-03_ses-003_task-s01e05a_sbref.json b/sub-03/ses-003/func/sub-03_ses-003_task-s01e06a_sbref.json similarity index 100% rename from sub-03/ses-003/func/sub-03_ses-003_task-s01e05a_sbref.json rename to sub-03/ses-003/func/sub-03_ses-003_task-s01e06a_sbref.json diff --git a/sub-03/ses-003/func/sub-03_ses-003_task-s01e05a_sbref.nii.gz b/sub-03/ses-003/func/sub-03_ses-003_task-s01e06a_sbref.nii.gz similarity index 100% rename from sub-03/ses-003/func/sub-03_ses-003_task-s01e05a_sbref.nii.gz rename to sub-03/ses-003/func/sub-03_ses-003_task-s01e06a_sbref.nii.gz diff --git a/sub-03/ses-003/func/sub-03_ses-003_task-s01e05b_bold.json b/sub-03/ses-003/func/sub-03_ses-003_task-s01e06b_bold.json similarity index 100% rename from sub-03/ses-003/func/sub-03_ses-003_task-s01e05b_bold.json rename to sub-03/ses-003/func/sub-03_ses-003_task-s01e06b_bold.json diff --git a/sub-03/ses-003/func/sub-03_ses-003_task-s01e05b_bold.nii.gz b/sub-03/ses-003/func/sub-03_ses-003_task-s01e06b_bold.nii.gz similarity index 100% rename from sub-03/ses-003/func/sub-03_ses-003_task-s01e05b_bold.nii.gz rename to sub-03/ses-003/func/sub-03_ses-003_task-s01e06b_bold.nii.gz diff --git a/sub-03/ses-003/func/sub-03_ses-003_task-s01e05b_sbref.json b/sub-03/ses-003/func/sub-03_ses-003_task-s01e06b_sbref.json similarity index 100% rename from sub-03/ses-003/func/sub-03_ses-003_task-s01e05b_sbref.json rename to sub-03/ses-003/func/sub-03_ses-003_task-s01e06b_sbref.json diff --git a/sub-03/ses-003/func/sub-03_ses-003_task-s01e05b_sbref.nii.gz b/sub-03/ses-003/func/sub-03_ses-003_task-s01e06b_sbref.nii.gz similarity index 100% rename from sub-03/ses-003/func/sub-03_ses-003_task-s01e05b_sbref.nii.gz rename to sub-03/ses-003/func/sub-03_ses-003_task-s01e06b_sbref.nii.gz diff --git a/sub-03/ses-051/anat/sub-03_ses-051_acq-axial_localizer.json b/sub-03/ses-051/anat/sub-03_ses-051_acq-axial_localizer.json deleted file mode 100644 index 13307eafe41..00000000000 --- a/sub-03/ses-051/anat/sub-03_ses-051_acq-axial_localizer.json +++ /dev/null @@ -1,80 +0,0 @@ -{ - "AcquisitionMatrixPE": 233, - "AcquisitionNumber": 1, - "AcquisitionTime": "17:20:56.652500", - "BaseResolution": 256, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190902", - "DeviceSerialNumber": "167006", - "DwellTime": 6.1e-06, - "EchoTime": 0.00369, - "FlipAngle": 20, - "ImageOrientationPatientDICOM": [ - 1, - 0, - 0, - 0, - 1, - 0 - ], - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "NORM", - "DIS2D" - ], - "ImagingFrequency": 123.259, - "InPlanePhaseEncodingDirectionDICOM": "COL", - "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", - "InstitutionName": "IUGM", - "InstitutionalDepartmentName": "Department", - "Interpolation2D": 1, - "MRAcquisitionType": "2D", - "MagneticFieldStrength": 3, - "Manufacturer": "Siemens", - "ManufacturersModelName": "Prisma_fit", - "Modality": "MR", - "NumberOfAverages": 2, - "PartialFourier": 1, - "PatientPosition": "HFS", - "PercentPhaseFOV": 100, - "PhaseEncodingDirection": "j-", - "PhaseEncodingSteps": 233, - "PhaseResolution": 0.91, - "PixelBandwidth": 320, - "ProcedureStepDescription": "video_friends", - "ProtocolName": "localizer", - "PulseSequenceDetails": "%SiemensSeq%_gre", - "ReceiveCoilActiveElements": "HC1-7;NC1,2", - "ReceiveCoilName": "HeadNeck_64", - "ReconMatrixPE": 512, - "RepetitionTime": 0.0075, - "SAR": 0.0247296, - "ScanningSequence": "GR", - "SequenceName": "_fl2d1", - "SequenceVariant": "SP_OSP", - "SeriesDescription": "localizer", - "SeriesNumber": 5, - "ShimSetting": [ - 620, - -7194, - -9127, - 77, - 28, - -20, - -10, - -23 - ], - "SliceThickness": 7, - "SliceTiming": [ - 0 - ], - "SoftwareVersions": "syngo_MR_E11", - "SpacingBetweenSlices": 8.4, - "StationName": "MRC35049", - "TxRefAmp": 207.184 -} \ No newline at end of file diff --git a/sub-03/ses-051/anat/sub-03_ses-051_acq-axial_localizer.nii.gz b/sub-03/ses-051/anat/sub-03_ses-051_acq-axial_localizer.nii.gz deleted file mode 120000 index b81f250d486..00000000000 --- a/sub-03/ses-051/anat/sub-03_ses-051_acq-axial_localizer.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/w9/J6/SHA256E-s163362--8f4356257b48abec84025775072357ff1bea2cd6785d60e2806455751416d51e.nii.gz/SHA256E-s163362--8f4356257b48abec84025775072357ff1bea2cd6785d60e2806455751416d51e.nii.gz \ No newline at end of file diff --git a/sub-03/ses-051/anat/sub-03_ses-051_acq-coronal_localizer.json b/sub-03/ses-051/anat/sub-03_ses-051_acq-coronal_localizer.json deleted file mode 100644 index 07cd4a123d3..00000000000 --- a/sub-03/ses-051/anat/sub-03_ses-051_acq-coronal_localizer.json +++ /dev/null @@ -1,80 +0,0 @@ -{ - "AcquisitionMatrixPE": 233, - "AcquisitionNumber": 1, - "AcquisitionTime": "17:21:3.642500", - "BaseResolution": 256, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190902", - "DeviceSerialNumber": "167006", - "DwellTime": 6.1e-06, - "EchoTime": 0.00369, - "FlipAngle": 20, - "ImageOrientationPatientDICOM": [ - 1, - 0, - 0, - 0, - 0, - -1 - ], - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "NORM", - "DIS2D" - ], - "ImagingFrequency": 123.259, - "InPlanePhaseEncodingDirectionDICOM": "ROW", - "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", - "InstitutionName": "IUGM", - "InstitutionalDepartmentName": "Department", - "Interpolation2D": 1, - "MRAcquisitionType": "2D", - "MagneticFieldStrength": 3, - "Manufacturer": "Siemens", - "ManufacturersModelName": "Prisma_fit", - "Modality": "MR", - "NumberOfAverages": 2, - "PartialFourier": 1, - "PatientPosition": "HFS", - "PercentPhaseFOV": 100, - "PhaseEncodingDirection": "i", - "PhaseEncodingSteps": 233, - "PhaseResolution": 0.91, - "PixelBandwidth": 320, - "ProcedureStepDescription": "video_friends", - "ProtocolName": "localizer", - "PulseSequenceDetails": "%SiemensSeq%_gre", - "ReceiveCoilActiveElements": "HC1-7;NC1,2", - "ReceiveCoilName": "HeadNeck_64", - "ReconMatrixPE": 512, - "RepetitionTime": 0.0075, - "SAR": 0.0247296, - "ScanningSequence": "GR", - "SequenceName": "_fl2d1", - "SequenceVariant": "SP_OSP", - "SeriesDescription": "localizer", - "SeriesNumber": 5, - "ShimSetting": [ - 620, - -7194, - -9127, - 77, - 28, - -20, - -10, - -23 - ], - "SliceThickness": 7, - "SliceTiming": [ - 0 - ], - "SoftwareVersions": "syngo_MR_E11", - "SpacingBetweenSlices": 8.4, - "StationName": "MRC35049", - "TxRefAmp": 207.184 -} \ No newline at end of file diff --git a/sub-03/ses-051/anat/sub-03_ses-051_acq-coronal_localizer.nii.gz b/sub-03/ses-051/anat/sub-03_ses-051_acq-coronal_localizer.nii.gz deleted file mode 120000 index bd2562b1b8e..00000000000 --- a/sub-03/ses-051/anat/sub-03_ses-051_acq-coronal_localizer.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/PW/Gq/SHA256E-s181334--a0a84cacdaf3373b197909078868665b892386d26ea3bc368586efe385c7fc67.nii.gz/SHA256E-s181334--a0a84cacdaf3373b197909078868665b892386d26ea3bc368586efe385c7fc67.nii.gz \ No newline at end of file diff --git a/sub-03/ses-051/anat/sub-03_ses-051_acq-sagittal_localizer.json b/sub-03/ses-051/anat/sub-03_ses-051_acq-sagittal_localizer.json deleted file mode 100644 index b18791cebfd..00000000000 --- a/sub-03/ses-051/anat/sub-03_ses-051_acq-sagittal_localizer.json +++ /dev/null @@ -1,82 +0,0 @@ -{ - "AcquisitionMatrixPE": 233, - "AcquisitionNumber": 1, - "AcquisitionTime": "17:20:49.662500", - "BaseResolution": 256, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190902", - "DeviceSerialNumber": "167006", - "DwellTime": 6.1e-06, - "EchoTime": 0.00369, - "FlipAngle": 20, - "ImageOrientationPatientDICOM": [ - 0, - 1, - 0, - 0, - 0, - -1 - ], - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "NORM", - "DIS2D" - ], - "ImagingFrequency": 123.259, - "InPlanePhaseEncodingDirectionDICOM": "ROW", - "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", - "InstitutionName": "IUGM", - "InstitutionalDepartmentName": "Department", - "Interpolation2D": 1, - "MRAcquisitionType": "2D", - "MagneticFieldStrength": 3, - "Manufacturer": "Siemens", - "ManufacturersModelName": "Prisma_fit", - "Modality": "MR", - "NumberOfAverages": 2, - "PartialFourier": 1, - "PatientPosition": "HFS", - "PercentPhaseFOV": 100, - "PhaseEncodingDirection": "i", - "PhaseEncodingSteps": 233, - "PhaseResolution": 0.91, - "PixelBandwidth": 320, - "ProcedureStepDescription": "video_friends", - "ProtocolName": "localizer", - "PulseSequenceDetails": "%SiemensSeq%_gre", - "ReceiveCoilActiveElements": "HC1-7;NC1,2", - "ReceiveCoilName": "HeadNeck_64", - "ReconMatrixPE": 512, - "RepetitionTime": 0.0075, - "SAR": 0.0247296, - "ScanningSequence": "GR", - "SequenceName": "_fl2d1", - "SequenceVariant": "SP_OSP", - "SeriesDescription": "localizer", - "SeriesNumber": 5, - "ShimSetting": [ - 620, - -7194, - -9127, - 77, - 28, - -20, - -10, - -23 - ], - "SliceThickness": 7, - "SliceTiming": [ - 0, - 10.4844, - 3.5 - ], - "SoftwareVersions": "syngo_MR_E11", - "SpacingBetweenSlices": 28, - "StationName": "MRC35049", - "TxRefAmp": 207.184 -} \ No newline at end of file diff --git a/sub-03/ses-051/anat/sub-03_ses-051_acq-sagittal_localizer.nii.gz b/sub-03/ses-051/anat/sub-03_ses-051_acq-sagittal_localizer.nii.gz deleted file mode 120000 index accad2cb535..00000000000 --- a/sub-03/ses-051/anat/sub-03_ses-051_acq-sagittal_localizer.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/px/gg/SHA256E-s583647--86e04b835b8a90b7cb7503812de9b4a09b75ea7a213ff8c456b31c267e5b222a.nii.gz/SHA256E-s583647--86e04b835b8a90b7cb7503812de9b4a09b75ea7a213ff8c456b31c267e5b222a.nii.gz \ No newline at end of file diff --git a/sub-03/ses-051/anat/sub-03_ses-051_scout.json b/sub-03/ses-051/anat/sub-03_ses-051_scout.json deleted file mode 100644 index 19a5dd38dbc..00000000000 --- a/sub-03/ses-051/anat/sub-03_ses-051_scout.json +++ /dev/null @@ -1,538 +0,0 @@ -{ - "AcquisitionMatrixPE": 160, - "AcquisitionNumber": 1, - "AcquisitionTime": "17:20:33.665000", - "BaseResolution": 160, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190902", - "DeviceSerialNumber": "167006", - "DwellTime": 5.8e-06, - "EchoTime": 0.00137, - "FlipAngle": 8, - "ImageOrientationPatientDICOM": [0, 1, 0, 0, 0, -1], - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "ND", - "NORM" -], - "ImagingFrequency": 123.259, - "InPlanePhaseEncodingDirectionDICOM": "ROW", - "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", - "InstitutionName": "IUGM", - "InstitutionalDepartmentName": "Department", - "MRAcquisitionType": "3D", - "MagneticFieldStrength": 3, - "Manufacturer": "Siemens", - "ManufacturersModelName": "Prisma_fit", - "Modality": "MR", - "ParallelReductionFactorInPlane": 3, - "PartialFourier": 0.75, - "PatientPosition": "HFS", - "PercentPhaseFOV": 100, - "PhaseEncodingSteps": 118, - "PhaseResolution": 1, - "PixelBandwidth": 540, - "ProcedureStepDescription": "video_friends", - "ProtocolName": "AAHead_Scout", - "PulseSequenceDetails": "%SiemensSeq%_AALScout", - "ReceiveCoilActiveElements": "HC1-7;NC1,2", - "ReceiveCoilName": "HeadNeck_64", - "ReconMatrixPE": 160, - "RefLinesPE": 24, - "RepetitionTime": 0.00315, - "SAR": 0.0169131, - "ScanOptions": "PFP", - "ScanningSequence": "GR", - "SequenceName": "_fl3d1_ns", - "SequenceVariant": "SP", - "SeriesDescription": "AAHead_Scout", - "SeriesNumber": 1, - "ShimSetting": [620, -7194, -9127, 77, 28, -20, -10, -23], - "SliceThickness": 1.6, - "SoftwareVersions": "syngo_MR_E11", - "StationName": "MRC35049", - "TxRefAmp": 207.184, - "dcmmeta_affine": [ - [1.600000023841858, 0.0, 0.0, -101.5999984741211], - [0.0, 1.625, 0.0, -118.375], - [0.0, 0.0, 1.625, -128.375], - [0.0, 0.0, 0.0, 1.0] -], - "dcmmeta_reorient_transform": [ - [0.0, 0.0, -1.0, 159.0], - [0.0, -1.0, 0.0, 159.0], - [-1.0, 0.0, 0.0, 127.0], - [0.0, 0.0, 0.0, 1.0] -], - "dcmmeta_shape": [128, 160, 160], - "dcmmeta_slice_dim": 0, - "dcmmeta_version": 0.6, - "global": { - "const": { - "AcquisitionMatrix": [0, 160, 160, 0], - "AcquisitionNumber": 1, - "AcquisitionTime": "172033.665000", - "AngioFlag": "N", - "BitsAllocated": 16, - "BitsStored": 12, - "BodyPartExamined": "BRAIN", - "Columns": 160, - "EchoNumbers": 1, - "EchoTime": 1.37, - "EchoTrainLength": 1, - "FlipAngle": 8.0, - "HighBit": 11, - "ImageOrientationPatient": [0.0, 1.0, 0.0, 0.0, 0.0, -1.0], - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "ND", - "NORM" -], - "ImagedNucleus": "1H", - "ImagingFrequency": 123.259113, - "InPlanePhaseEncodingDirection": "ROW", - "MRAcquisitionType": "3D", - "MagneticFieldStrength": 3.0, - "Manufacturer": "SIEMENS", - "ManufacturerModelName": "Prisma_fit", - "Modality": "MR", - "NumberOfAverages": 1.0, - "NumberOfPhaseEncodingSteps": 118, - "PercentPhaseFieldOfView": 100.0, - "PercentSampling": 100.0, - "PerformedProcedureStepStartTime": "170651.671000", - "PhotometricInterpretation": "MONOCHROME2", - "PixelBandwidth": 540.0, - 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a/sub-03/ses-051/fmap/sub-03_ses-051_acq-sbref_dir-PA_run-01_epi.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/4z/4w/SHA256E-s1065226--21e1bb77b4ee2183331f63fc3ca710e7cc80ff0dc6c8e5178fc7df500fc93fbc.nii.gz/SHA256E-s1065226--21e1bb77b4ee2183331f63fc3ca710e7cc80ff0dc6c8e5178fc7df500fc93fbc.nii.gz \ No newline at end of file diff --git a/sub-03/ses-051/fmap/sub-03_ses-051_acq-sbref_dir-PA_run-02_epi.json b/sub-03/ses-051/fmap/sub-03_ses-051_acq-sbref_dir-PA_run-02_epi.json deleted file mode 100644 index b8de5a0f1f0..00000000000 --- a/sub-03/ses-051/fmap/sub-03_ses-051_acq-sbref_dir-PA_run-02_epi.json +++ /dev/null @@ -1,162 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "17:35:32.262500", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": 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+++ /dev/null @@ -1,168 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "17:22:33.572500", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190902", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": "167006", - "DwellTime": 2.1e-06, - "EchoTime": 0.037, - "EchoTrainLength": 104, - "EffectiveEchoSpacing": 0.000560011, - "FlipAngle": 52, - "ImageComments": "Unaliased_MB4_PE3_LB", - "ImageOrientationPatientDICOM": [0.999572, 0.0292506, 0.0002536, -0.028619, 0.979706, -0.198385], - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "MB", - "ND", - "MOSAIC" -], - "ImagingFrequency": 123.259, - "InPlanePhaseEncodingDirectionDICOM": "COL", - "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", - 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-../../../.git/annex/objects/q8/zP/SHA256E-s517624775--3b48a7d65e6f02139b5b04b19e3953161bc1a5dac67098cd33d9b32461d6a8ab.nii.gz/SHA256E-s517624775--3b48a7d65e6f02139b5b04b19e3953161bc1a5dac67098cd33d9b32461d6a8ab.nii.gz \ No newline at end of file diff --git a/sub-03/ses-051/func/sub-03_ses-051_task-s04e23b_sbref.json b/sub-03/ses-051/func/sub-03_ses-051_task-s04e23b_sbref.json deleted file mode 100644 index c3ca8983e84..00000000000 --- a/sub-03/ses-051/func/sub-03_ses-051_task-s04e23b_sbref.json +++ /dev/null @@ -1,160 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "17:35:32.262500", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190902", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": "167006", - "DwellTime": 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newline at end of file diff --git a/sub-03/ses-051/func/sub-03_ses-051_task-s04e23b_sbref.nii.gz b/sub-03/ses-051/func/sub-03_ses-051_task-s04e23b_sbref.nii.gz deleted file mode 120000 index 0cc2cd01efa..00000000000 --- a/sub-03/ses-051/func/sub-03_ses-051_task-s04e23b_sbref.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/kx/Mj/SHA256E-s1064074--61503c11ddd3284b99f608ac025e7b1a51540e3f3d03bad1289ec3f8cbcd5629.nii.gz/SHA256E-s1064074--61503c11ddd3284b99f608ac025e7b1a51540e3f3d03bad1289ec3f8cbcd5629.nii.gz \ No newline at end of file diff --git a/sub-03/ses-051/sub-03_ses-051_scans.json b/sub-03/ses-051/sub-03_ses-051_scans.json deleted file mode 100644 index 8733b9e8ce0..00000000000 --- a/sub-03/ses-051/sub-03_ses-051_scans.json +++ /dev/null @@ -1,16 +0,0 @@ -{ - "filename": { - "Description": "Name of the nifti file" - }, - "acq_time": { - "LongName": "Acquisition time", - "Description": "Acquisition time of the particular scan" - }, - "operator": { - "Description": "Name of the operator" - }, - "randstr": { - "LongName": "Random string", - "Description": "md5 hash of UIDs" - } -} \ No newline at end of file diff --git a/sub-03/ses-051/sub-03_ses-051_scans.tsv b/sub-03/ses-051/sub-03_ses-051_scans.tsv deleted file mode 120000 index e2ccf9c7eff..00000000000 --- a/sub-03/ses-051/sub-03_ses-051_scans.tsv +++ /dev/null @@ -1 +0,0 @@ -../../.git/annex/objects/Pw/96/SHA256E-s1024--54637a7902507ef79d9f7604168b30845b98f3c7e08232efac136f16d9992eb0.tsv/SHA256E-s1024--54637a7902507ef79d9f7604168b30845b98f3c7e08232efac136f16d9992eb0.tsv \ No newline at end of file diff --git a/sub-03/ses-064/func/sub-03_ses-064_task-s05e20a_bold.json b/sub-03/ses-064/func/sub-03_ses-064_task-s05e20a_bold.json deleted file mode 100644 index ca58556151f..00000000000 --- a/sub-03/ses-064/func/sub-03_ses-064_task-s05e20a_bold.json +++ /dev/null @@ -1,168 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "16:41:48.132500", - 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-../../../.git/annex/objects/PF/mw/SHA256E-s454181160--eee76252cfcfd91b73bf9b9d81e7a74f3010f8267e3e104c2323eed4888400c6.nii.gz/SHA256E-s454181160--eee76252cfcfd91b73bf9b9d81e7a74f3010f8267e3e104c2323eed4888400c6.nii.gz \ No newline at end of file diff --git a/sub-03/ses-064/func/sub-03_ses-064_task-s05e20a_sbref.json b/sub-03/ses-064/func/sub-03_ses-064_task-s05e20a_sbref.json deleted file mode 100644 index 49de8bcefab..00000000000 --- a/sub-03/ses-064/func/sub-03_ses-064_task-s05e20a_sbref.json +++ /dev/null @@ -1,160 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "16:41:37.702500", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190902", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": "167006", - "DwellTime": 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- "StationName": "MRC35049", - "TaskName": "s05e20a", - "TotalReadoutTime": 0.0576811, - "TxRefAmp": 203.436, - "WipMemBlock": "bb23160f-3f9d-4473-9847-e90bd59e342b||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", - "dcmmeta_affine": [ - [-1.9996882677078247, -0.03525369614362717, -0.002032739110291004, 106.79047393798828], - [-0.033940527588129044, 1.9505990743637085, -0.44046708941459656, -75.81254577636719], - [-0.009746575728058815, 0.44036391377449036, 1.9508932828903198, -38.600738525390625], - [0.0, 0.0, 0.0, 1.0] -], - "dcmmeta_reorient_transform": [ - [0.0, -1.0, 0.0, 103.0], - [1.0, 0.0, 0.0, 0.0], - [0.0, 0.0, 1.0, 0.0], - [0.0, 0.0, 0.0, 1.0] -], - "dcmmeta_shape": [104, 104, 60], - "dcmmeta_slice_dim": 2, - "dcmmeta_version": 0.6, - "global": { - "const": { - "AcquisitionMatrix": [104, 0, 0, 104], - "AcquisitionNumber": 1, - "AcquisitionTime": "164137.702500", - "AngioFlag": "N", - "BitsAllocated": 16, - "BitsStored": 16, - "BodyPartExamined": "BRAIN", - "Columns": 832, - "ContentTime": "164332.435000", - "EchoNumbers": 1, - "EchoTime": 37.0, - "EchoTrainLength": 104, - "FlipAngle": 52.0, - "HighBit": 15, - "ImageOrientationPatient": [0.99984411846193, 0.01697026347573, -0.0048732878692, -0.0176268479902, 0.97529954272362, -0.2201819615523], - "ImagePositionPatient": [-818.21351243783, -847.47158163261, 170.59696735082], - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "ND", - "MOSAIC" -], - "ImagedNucleus": "1H", - "ImagingFrequency": 123.258942, - "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "164332.435000", - "InstanceNumber": 1, - "LargestImagePixelValue": 59416, - "MRAcquisitionType": "2D", - "MagneticFieldStrength": 3.0, - "Manufacturer": "SIEMENS", - "ManufacturerModelName": "Prisma_fit", - "Modality": "MR", - "NumberOfAverages": 1.0, - "NumberOfPhaseEncodingSteps": 104, - "PercentPhaseFieldOfView": 100.0, - "PercentSampling": 100.0, - "PerformedProcedureStepStartTime": "154849.915000", - "PhotometricInterpretation": "MONOCHROME2", - "PixelBandwidth": 2290.0, - "PixelRepresentation": 0, - "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-friends-s05e20a", - "RepetitionTime": 1490.0, - "Rows": 832, - "SAR": 0.02954277875086, - "SamplesPerPixel": 1, - "ScanOptions": "FS", - "ScanningSequence": "EP", - "SequenceName": "epfid2d1_104", - "SequenceVariant": [ - "SK", - "SS" -], - "SeriesDescription": "func_task-friends-s05e20a_SBRef", - "SeriesNumber": 8, - "SeriesTime": "164332.431000", - "SliceLocation": -21.065034474254, - "SliceThickness": 2.0, - "SmallestImagePixelValue": 0, - "SoftwareVersions": "syngo MR E11", - "SpacingBetweenSlices": 2.0000000177519, - "SpecificCharacterSet": "ISO_IR 100", - "StudyID": "1", - "StudyTime": "154849.853000", - "TransmitCoilName": "Body", - "VariableFlipAngleFlag": "N", - "WindowCenter": 12022.0, - "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 25770.0, - "dBdt": 0.0}, - "slices": {} - } -} \ No newline at end of file diff --git a/sub-03/ses-064/func/sub-03_ses-064_task-s05e20a_sbref.nii.gz b/sub-03/ses-064/func/sub-03_ses-064_task-s05e20a_sbref.nii.gz deleted file mode 120000 index 470d0471251..00000000000 --- a/sub-03/ses-064/func/sub-03_ses-064_task-s05e20a_sbref.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/PG/j7/SHA256E-s1062784--cbf73328a9331fec708ea92b5cc45e3841553689b2a5dce355e3e204919d6497.nii.gz/SHA256E-s1062784--cbf73328a9331fec708ea92b5cc45e3841553689b2a5dce355e3e204919d6497.nii.gz \ No newline at end of file diff --git a/sub-03/ses-071/fmap/sub-03_ses-071_acq-sbref_dir-AP_run-01_epi.json b/sub-03/ses-071/fmap/sub-03_ses-071_acq-sbref_dir-AP_run-01_epi.json index ba65d20bfd4..0506ba47ab4 100644 --- a/sub-03/ses-071/fmap/sub-03_ses-071_acq-sbref_dir-AP_run-01_epi.json +++ b/sub-03/ses-071/fmap/sub-03_ses-071_acq-sbref_dir-AP_run-01_epi.json @@ -32,7 +32,7 @@ "InstitutionName": "IUGM", "InstitutionalDepartmentName": "Department", "IntendedFor": [ - "ses-071/func/sub-03_ses-071_task-s06e01a_bold.nii.gz", + "ses-071/func/sub-03_ses-071_task-s06e03a_bold.nii.gz", "ses-071/func/sub-03_ses-071_task-s06e03b_bold.nii.gz", "ses-071/func/sub-03_ses-071_task-s06e04a_bold.nii.gz", "ses-071/func/sub-03_ses-071_task-s06e04b_bold.nii.gz" diff --git a/sub-03/ses-071/fmap/sub-03_ses-071_acq-sbref_dir-PA_run-01_epi.json b/sub-03/ses-071/fmap/sub-03_ses-071_acq-sbref_dir-PA_run-01_epi.json index f44ec76e823..ad893f096c9 100644 --- a/sub-03/ses-071/fmap/sub-03_ses-071_acq-sbref_dir-PA_run-01_epi.json +++ b/sub-03/ses-071/fmap/sub-03_ses-071_acq-sbref_dir-PA_run-01_epi.json @@ -32,7 +32,7 @@ "InstitutionName": "IUGM", "InstitutionalDepartmentName": "Department", "IntendedFor": [ - "ses-071/func/sub-03_ses-071_task-s06e01a_bold.nii.gz" + "ses-071/func/sub-03_ses-071_task-s06e03a_bold.nii.gz" ], "MRAcquisitionType": "2D", "MagneticFieldStrength": 3, @@ -47,7 +47,7 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-friends-s06e01a", + "ProtocolName": "func_task-friends-s06e03a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", @@ -129,7 +129,7 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-friends-s06e01a", + "ProtocolName": "func_task-friends-s06e03a", "RepetitionTime": 1490.0, "Rows": 832, "SAR": 0.03722905420655, diff --git a/sub-03/ses-071/func/sub-03_ses-071_task-s06e01a_bold.nii.gz b/sub-03/ses-071/func/sub-03_ses-071_task-s06e01a_bold.nii.gz deleted file mode 120000 index 3648a9bc4f5..00000000000 --- a/sub-03/ses-071/func/sub-03_ses-071_task-s06e01a_bold.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/Ww/vW/SHA256E-s477446166--461967fce74ba3ede3f67edc2727b123bb55059e7b7127695458037dae1a3dc1.nii.gz/SHA256E-s477446166--461967fce74ba3ede3f67edc2727b123bb55059e7b7127695458037dae1a3dc1.nii.gz \ No newline at end of file diff --git a/sub-03/ses-071/func/sub-03_ses-071_task-s06e01a_bold.json b/sub-03/ses-071/func/sub-03_ses-071_task-s06e03a_bold.json similarity index 99% rename from sub-03/ses-071/func/sub-03_ses-071_task-s06e01a_bold.json rename to sub-03/ses-071/func/sub-03_ses-071_task-s06e03a_bold.json index 28be4fc5dd4..56d0d164e32 100644 --- a/sub-03/ses-071/func/sub-03_ses-071_task-s06e01a_bold.json +++ b/sub-03/ses-071/func/sub-03_ses-071_task-s06e03a_bold.json @@ -46,7 +46,7 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-friends-s06e01a", + "ProtocolName": "func_task-friends-s06e03a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", @@ -65,7 +65,7 @@ "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", - "TaskName": "s06e01a", + "TaskName": "s06e03a", "TotalReadoutTime": 0.0576811, "TxRefAmp": 211.283, "WipMemBlock": "c040cc84-b7d0-4373-87af-bebf3867e043||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", @@ -124,7 +124,7 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-friends-s06e01a", + "ProtocolName": "func_task-friends-s06e03a", "RepetitionTime": 1490.0, "Rows": 832, "SAR": 0.03722905420655, diff --git a/sub-03/ses-071/func/sub-03_ses-071_task-s06e03a_bold.nii.gz b/sub-03/ses-071/func/sub-03_ses-071_task-s06e03a_bold.nii.gz new file mode 120000 index 00000000000..a53455e5826 --- /dev/null +++ b/sub-03/ses-071/func/sub-03_ses-071_task-s06e03a_bold.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/2j/qv/SHA256E-s464610299--210137d4b1c693b92053e81896c7174be43ee00ee77815de44405337ba692f80.nii.gz/SHA256E-s464610299--210137d4b1c693b92053e81896c7174be43ee00ee77815de44405337ba692f80.nii.gz \ No newline at end of file diff --git a/sub-03/ses-071/func/sub-03_ses-071_task-s06e01a_sbref.json b/sub-03/ses-071/func/sub-03_ses-071_task-s06e03a_sbref.json similarity index 97% rename from sub-03/ses-071/func/sub-03_ses-071_task-s06e01a_sbref.json rename to sub-03/ses-071/func/sub-03_ses-071_task-s06e03a_sbref.json index 031e7efcf1d..047bf285667 100644 --- a/sub-03/ses-071/func/sub-03_ses-071_task-s06e01a_sbref.json +++ b/sub-03/ses-071/func/sub-03_ses-071_task-s06e03a_sbref.json @@ -44,7 +44,7 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-friends-s06e01a", + "ProtocolName": "func_task-friends-s06e03a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", @@ -63,7 +63,7 @@ "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", - "TaskName": "s06e01a", + "TaskName": "s06e03a", "TotalReadoutTime": 0.0576811, "TxRefAmp": 211.283, "WipMemBlock": "c040cc84-b7d0-4373-87af-bebf3867e043||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", @@ -127,7 +127,7 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-friends-s06e01a", + "ProtocolName": "func_task-friends-s06e03a", "RepetitionTime": 1490.0, "Rows": 832, "SAR": 0.03722905420655, diff --git a/sub-03/ses-071/func/sub-03_ses-071_task-s06e01a_sbref.nii.gz b/sub-03/ses-071/func/sub-03_ses-071_task-s06e03a_sbref.nii.gz similarity index 100% rename from sub-03/ses-071/func/sub-03_ses-071_task-s06e01a_sbref.nii.gz rename to sub-03/ses-071/func/sub-03_ses-071_task-s06e03a_sbref.nii.gz diff --git a/sub-03/ses-071/sub-03_ses-071_scans.tsv b/sub-03/ses-071/sub-03_ses-071_scans.tsv index c759116cfc8..9fd34f6e7af 120000 --- a/sub-03/ses-071/sub-03_ses-071_scans.tsv +++ b/sub-03/ses-071/sub-03_ses-071_scans.tsv @@ -1 +1 @@ -../../.git/annex/objects/jQ/8M/SHA256E-s1614--77f227e61399d04de49fe4b7578126a595407a62a6bbac84d751b138c2baedd0.tsv/SHA256E-s1614--77f227e61399d04de49fe4b7578126a595407a62a6bbac84d751b138c2baedd0.tsv \ No newline at end of file +../../.git/annex/objects/8J/59/SHA256E-s1614--232cdf9678d63dd7be49409041a30b955fce268e90cc5407b9a6f040189fccca.tsv/SHA256E-s1614--232cdf9678d63dd7be49409041a30b955fce268e90cc5407b9a6f040189fccca.tsv \ No newline at end of file diff --git a/sub-03/ses-073/anat/sub-03_ses-073_localizer1.json b/sub-03/ses-073/anat/sub-03_ses-073_localizer1.json deleted file mode 100644 index 90e614c8e72..00000000000 --- a/sub-03/ses-073/anat/sub-03_ses-073_localizer1.json +++ /dev/null @@ -1,83 +0,0 @@ -{ - "AcquisitionMatrixPE": 233, - "AcquisitionNumber": 1, - "AcquisitionTime": "13:33:17.075000", - "BaseResolution": 256, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190902", - "DeviceSerialNumber": "167006", - "DwellTime": 6.1e-06, - "EchoTime": 0.00369, - "FlipAngle": 20, - "HeudiconvVersion": "0.10.0", - "ImageOrientationPatientDICOM": [ - 0, - 1, - 0, - 0, - 0, - -1 - ], - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "NORM", - "DIS2D" - ], - "ImagingFrequency": 123.259, - "InPlanePhaseEncodingDirectionDICOM": "ROW", - "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", - "InstitutionName": "IUGM", - "InstitutionalDepartmentName": "Department", - "Interpolation2D": 1, - "MRAcquisitionType": "2D", - "MagneticFieldStrength": 3, - "Manufacturer": "Siemens", - "ManufacturersModelName": "Prisma_fit", - "Modality": "MR", - "NumberOfAverages": 2, - "PartialFourier": 1, - "PatientPosition": "HFS", - "PercentPhaseFOV": 100, - "PhaseEncodingDirection": "i", - "PhaseEncodingSteps": 233, - "PhaseResolution": 0.91, - "PixelBandwidth": 320, - "ProcedureStepDescription": "video_friends", - "ProtocolName": "localizer", - "PulseSequenceDetails": "%SiemensSeq%_gre", - "ReceiveCoilActiveElements": "HC1-7;NC1,2", - "ReceiveCoilName": "HeadNeck_64", - "ReconMatrixPE": 512, - "RepetitionTime": 0.0075, - "SAR": 0.0533238, - "ScanningSequence": "GR", - "SequenceName": "_fl2d1", - "SequenceVariant": "SP_OSP", - "SeriesDescription": "localizer", - "SeriesNumber": 5, - "ShimSetting": [ - 621, - -7191, - -9126, - 52, - 33, - -14, - -34, - -17 - ], - "SliceThickness": 7, - "SliceTiming": [ - 0, - 10.4844, - 3.48438 - ], - "SoftwareVersions": "syngo_MR_E11", - "SpacingBetweenSlices": 28, - "StationName": "MRC35049", - "TxRefAmp": 257.49 -} \ No newline at end of file diff --git a/sub-03/ses-073/anat/sub-03_ses-073_localizer1.nii.gz b/sub-03/ses-073/anat/sub-03_ses-073_localizer1.nii.gz deleted file mode 120000 index 25bb32fe24c..00000000000 --- a/sub-03/ses-073/anat/sub-03_ses-073_localizer1.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/Q6/XX/SHA256E-s568748--c8e8823df0e64645ed6dafdb5e382e1f6f67115e7043b9059230a3ac26dc6b2f.nii.gz/SHA256E-s568748--c8e8823df0e64645ed6dafdb5e382e1f6f67115e7043b9059230a3ac26dc6b2f.nii.gz \ No newline at end of file diff --git a/sub-03/ses-073/anat/sub-03_ses-073_localizer2.json b/sub-03/ses-073/anat/sub-03_ses-073_localizer2.json deleted file mode 100644 index 30f31880cb9..00000000000 --- a/sub-03/ses-073/anat/sub-03_ses-073_localizer2.json +++ /dev/null @@ -1,81 +0,0 @@ -{ - "AcquisitionMatrixPE": 233, - "AcquisitionNumber": 1, - "AcquisitionTime": "13:33:31.055000", - "BaseResolution": 256, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190902", - "DeviceSerialNumber": "167006", - "DwellTime": 6.1e-06, - "EchoTime": 0.00369, - "FlipAngle": 20, - "HeudiconvVersion": "0.10.0", - "ImageOrientationPatientDICOM": [ - 1, - 0, - 0, - 0, - 0, - -1 - ], - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "NORM", - "DIS2D" - ], - "ImagingFrequency": 123.259, - "InPlanePhaseEncodingDirectionDICOM": "ROW", - "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", - "InstitutionName": "IUGM", - "InstitutionalDepartmentName": "Department", - "Interpolation2D": 1, - "MRAcquisitionType": "2D", - "MagneticFieldStrength": 3, - "Manufacturer": "Siemens", - "ManufacturersModelName": "Prisma_fit", - "Modality": "MR", - "NumberOfAverages": 2, - "PartialFourier": 1, - "PatientPosition": "HFS", - "PercentPhaseFOV": 100, - "PhaseEncodingDirection": "i", - "PhaseEncodingSteps": 233, - "PhaseResolution": 0.91, - "PixelBandwidth": 320, - "ProcedureStepDescription": "video_friends", - "ProtocolName": "localizer", - "PulseSequenceDetails": "%SiemensSeq%_gre", - "ReceiveCoilActiveElements": "HC1-7;NC1,2", - "ReceiveCoilName": "HeadNeck_64", - "ReconMatrixPE": 512, - "RepetitionTime": 0.0075, - "SAR": 0.0533238, - "ScanningSequence": "GR", - "SequenceName": "_fl2d1", - "SequenceVariant": "SP_OSP", - "SeriesDescription": "localizer", - "SeriesNumber": 5, - "ShimSetting": [ - 621, - -7191, - -9126, - 52, - 33, - -14, - -34, - -17 - ], - "SliceThickness": 7, - "SliceTiming": [ - 0 - ], - "SoftwareVersions": "syngo_MR_E11", - "SpacingBetweenSlices": 8.4, - "StationName": "MRC35049", - "TxRefAmp": 257.49 -} \ No newline at end of file diff --git a/sub-03/ses-073/anat/sub-03_ses-073_localizer2.nii.gz b/sub-03/ses-073/anat/sub-03_ses-073_localizer2.nii.gz deleted file mode 120000 index ad37b5c6f0b..00000000000 --- a/sub-03/ses-073/anat/sub-03_ses-073_localizer2.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/FV/w3/SHA256E-s175657--02b29bbab7ed711f5dfe4c94beb1a7a366379cb80af31626e1177a5b45ba27a4.nii.gz/SHA256E-s175657--02b29bbab7ed711f5dfe4c94beb1a7a366379cb80af31626e1177a5b45ba27a4.nii.gz \ No newline at end of file diff --git a/sub-03/ses-073/anat/sub-03_ses-073_localizer3.json b/sub-03/ses-073/anat/sub-03_ses-073_localizer3.json deleted file mode 100644 index a47a7a1feeb..00000000000 --- a/sub-03/ses-073/anat/sub-03_ses-073_localizer3.json +++ /dev/null @@ -1,81 +0,0 @@ -{ - "AcquisitionMatrixPE": 233, - "AcquisitionNumber": 1, - "AcquisitionTime": "13:33:24.065000", - "BaseResolution": 256, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190902", - "DeviceSerialNumber": "167006", - "DwellTime": 6.1e-06, - "EchoTime": 0.00369, - "FlipAngle": 20, - "HeudiconvVersion": "0.10.0", - "ImageOrientationPatientDICOM": [ - 1, - 0, - 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+++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/Zz/X4/SHA256E-s1082204--29c4b20817e4af038832183e7fa02baeddb333f1c746d219149b92f32b95b031.nii.gz/SHA256E-s1082204--29c4b20817e4af038832183e7fa02baeddb333f1c746d219149b92f32b95b031.nii.gz \ No newline at end of file diff --git a/sub-03/ses-073/fmap/sub-03_ses-073_acq-sbref_dir-PA_run-01_epi.json b/sub-03/ses-073/fmap/sub-03_ses-073_acq-sbref_dir-PA_run-01_epi.json deleted file mode 100644 index c247b5ffa6a..00000000000 --- a/sub-03/ses-073/fmap/sub-03_ses-073_acq-sbref_dir-PA_run-01_epi.json +++ /dev/null @@ -1,160 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "13:35:55.250000", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190902", - "DerivedVendorReportedEchoSpacing": 0.000560011, - 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"dBdt": 0.0}, - "slices": {} - } -} \ No newline at end of file diff --git a/sub-03/ses-073/fmap/sub-03_ses-073_acq-sbref_dir-PA_run-01_epi.nii.gz b/sub-03/ses-073/fmap/sub-03_ses-073_acq-sbref_dir-PA_run-01_epi.nii.gz deleted file mode 120000 index bcf6a41c426..00000000000 --- a/sub-03/ses-073/fmap/sub-03_ses-073_acq-sbref_dir-PA_run-01_epi.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/gj/Gz/SHA256E-s1071332--0db6c3d09c39f1a1e6845764f8a25d36171a283cdc35ff53116678013ee960de.nii.gz/SHA256E-s1071332--0db6c3d09c39f1a1e6845764f8a25d36171a283cdc35ff53116678013ee960de.nii.gz \ No newline at end of file diff --git a/sub-03/ses-073/fmap/sub-03_ses-073_acq-sbref_dir-PA_run-02_epi.json b/sub-03/ses-073/fmap/sub-03_ses-073_acq-sbref_dir-PA_run-02_epi.json deleted file mode 100644 index 2f2dc64f709..00000000000 --- a/sub-03/ses-073/fmap/sub-03_ses-073_acq-sbref_dir-PA_run-02_epi.json +++ /dev/null @@ -1,163 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - 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-../../../.git/annex/objects/kw/0V/SHA256E-s1070518--0b38ab3ca3c2e5e82b99074a93500f86bb4fd7b4bab598792cbb91d1450c156f.nii.gz/SHA256E-s1070518--0b38ab3ca3c2e5e82b99074a93500f86bb4fd7b4bab598792cbb91d1450c156f.nii.gz \ No newline at end of file diff --git a/sub-03/ses-073/fmap/sub-03_ses-073_acq-sbref_dir-PA_run-03_epi.json b/sub-03/ses-073/fmap/sub-03_ses-073_acq-sbref_dir-PA_run-03_epi.json deleted file mode 100644 index 828f349f3d6..00000000000 --- a/sub-03/ses-073/fmap/sub-03_ses-073_acq-sbref_dir-PA_run-03_epi.json +++ /dev/null @@ -1,163 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "13:57:1.672500", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190902", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": "167006", 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"WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 26166.0, - "dBdt": 0.0}, - "slices": {} - } -} \ No newline at end of file diff --git a/sub-03/ses-073/fmap/sub-03_ses-073_acq-sbref_dir-PA_run-03_epi.nii.gz b/sub-03/ses-073/fmap/sub-03_ses-073_acq-sbref_dir-PA_run-03_epi.nii.gz deleted file mode 120000 index cecada0d25e..00000000000 --- a/sub-03/ses-073/fmap/sub-03_ses-073_acq-sbref_dir-PA_run-03_epi.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/5z/9m/SHA256E-s1070941--e9189b3ab2278ea959c7eba1598bf3e7a00f3fbbb9667ed4c264fa6b67319c1e.nii.gz/SHA256E-s1070941--e9189b3ab2278ea959c7eba1598bf3e7a00f3fbbb9667ed4c264fa6b67319c1e.nii.gz \ No newline at end of file diff --git a/sub-03/ses-073/func/sub-03_ses-073_task-s06e07a_bold.json b/sub-03/ses-073/func/sub-03_ses-073_task-s06e07a_bold.json deleted file mode 100644 index ca77f7536d3..00000000000 --- a/sub-03/ses-073/func/sub-03_ses-073_task-s06e07a_bold.json +++ /dev/null @@ -1,169 +0,0 @@ -{ - 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"WindowCenter": 12181.0, - "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 26166.0, - "dBdt": 0.0}, - "slices": {} - } -} \ No newline at end of file diff --git a/sub-03/ses-073/func/sub-03_ses-073_task-s06e07b_sbref.nii.gz b/sub-03/ses-073/func/sub-03_ses-073_task-s06e07b_sbref.nii.gz deleted file mode 120000 index cecada0d25e..00000000000 --- a/sub-03/ses-073/func/sub-03_ses-073_task-s06e07b_sbref.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/5z/9m/SHA256E-s1070941--e9189b3ab2278ea959c7eba1598bf3e7a00f3fbbb9667ed4c264fa6b67319c1e.nii.gz/SHA256E-s1070941--e9189b3ab2278ea959c7eba1598bf3e7a00f3fbbb9667ed4c264fa6b67319c1e.nii.gz \ No newline at end of file diff --git a/sub-03/ses-073/sub-03_ses-073_scans.tsv b/sub-03/ses-073/sub-03_ses-073_scans.tsv deleted file mode 120000 index 7692cdbf549..00000000000 --- a/sub-03/ses-073/sub-03_ses-073_scans.tsv +++ /dev/null @@ -1 +0,0 @@ -../../.git/annex/objects/4q/gj/SHA256E-s1361--236bce41bb7484977c1745d18951c6657488a1b8326ed2f1a639d68907d17bce.tsv/SHA256E-s1361--236bce41bb7484977c1745d18951c6657488a1b8326ed2f1a639d68907d17bce.tsv \ No newline at end of file diff --git a/sub-04/ses-001/func/sub-04_ses-001_task-s01e06a_bold.json b/sub-04/ses-001/func/sub-04_ses-001_task-s01e02a_bold.json similarity index 100% rename from sub-04/ses-001/func/sub-04_ses-001_task-s01e06a_bold.json rename to sub-04/ses-001/func/sub-04_ses-001_task-s01e02a_bold.json diff --git a/sub-04/ses-001/func/sub-04_ses-001_task-s01e06a_bold.nii.gz b/sub-04/ses-001/func/sub-04_ses-001_task-s01e02a_bold.nii.gz similarity index 100% rename from sub-04/ses-001/func/sub-04_ses-001_task-s01e06a_bold.nii.gz rename to sub-04/ses-001/func/sub-04_ses-001_task-s01e02a_bold.nii.gz diff --git a/sub-04/ses-001/func/sub-04_ses-001_task-s01e06a_sbref.json b/sub-04/ses-001/func/sub-04_ses-001_task-s01e02a_sbref.json similarity index 100% rename from sub-04/ses-001/func/sub-04_ses-001_task-s01e06a_sbref.json rename to sub-04/ses-001/func/sub-04_ses-001_task-s01e02a_sbref.json diff --git a/sub-04/ses-001/func/sub-04_ses-001_task-s01e06a_sbref.nii.gz b/sub-04/ses-001/func/sub-04_ses-001_task-s01e02a_sbref.nii.gz similarity index 100% rename from sub-04/ses-001/func/sub-04_ses-001_task-s01e06a_sbref.nii.gz rename to sub-04/ses-001/func/sub-04_ses-001_task-s01e02a_sbref.nii.gz diff --git a/sub-04/ses-001/func/sub-04_ses-001_task-s01e06b_bold.json b/sub-04/ses-001/func/sub-04_ses-001_task-s01e02b_bold.json similarity index 100% rename from sub-04/ses-001/func/sub-04_ses-001_task-s01e06b_bold.json rename to sub-04/ses-001/func/sub-04_ses-001_task-s01e02b_bold.json diff --git a/sub-04/ses-001/func/sub-04_ses-001_task-s01e06b_bold.nii.gz b/sub-04/ses-001/func/sub-04_ses-001_task-s01e02b_bold.nii.gz similarity index 100% rename from sub-04/ses-001/func/sub-04_ses-001_task-s01e06b_bold.nii.gz rename to sub-04/ses-001/func/sub-04_ses-001_task-s01e02b_bold.nii.gz diff --git a/sub-04/ses-001/func/sub-04_ses-001_task-s01e06b_sbref.json b/sub-04/ses-001/func/sub-04_ses-001_task-s01e02b_sbref.json similarity index 100% rename from sub-04/ses-001/func/sub-04_ses-001_task-s01e06b_sbref.json rename to sub-04/ses-001/func/sub-04_ses-001_task-s01e02b_sbref.json diff --git a/sub-04/ses-001/func/sub-04_ses-001_task-s01e06b_sbref.nii.gz b/sub-04/ses-001/func/sub-04_ses-001_task-s01e02b_sbref.nii.gz similarity index 100% rename from sub-04/ses-001/func/sub-04_ses-001_task-s01e06b_sbref.nii.gz rename to sub-04/ses-001/func/sub-04_ses-001_task-s01e02b_sbref.nii.gz diff --git a/sub-04/ses-003/func/sub-04_ses-003_task-s01e02a_bold.json b/sub-04/ses-003/func/sub-04_ses-003_task-s01e02a_bold.json deleted file mode 100644 index 46c68272e50..00000000000 --- a/sub-04/ses-003/func/sub-04_ses-003_task-s01e02a_bold.json +++ /dev/null @@ -1,168 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, 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file mode 120000 index 51e1c280db9..00000000000 --- a/sub-04/ses-003/func/sub-04_ses-003_task-s01e02b_bold.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/kG/m5/SHA256E-s495716817--7e2ccb77db097df66510c93c167fbfa298c6eaa43db0666caf7e3e727f2c9d45.nii.gz/SHA256E-s495716817--7e2ccb77db097df66510c93c167fbfa298c6eaa43db0666caf7e3e727f2c9d45.nii.gz \ No newline at end of file diff --git a/sub-04/ses-003/func/sub-04_ses-003_task-s01e02b_sbref.nii.gz b/sub-04/ses-003/func/sub-04_ses-003_task-s01e02b_sbref.nii.gz deleted file mode 120000 index b12d320715b..00000000000 --- a/sub-04/ses-003/func/sub-04_ses-003_task-s01e02b_sbref.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/Px/Fx/SHA256E-s1089497--c983818f766bb944b5a536c96b3206c67d09e28be2920a6f7ff1f49e94b05963.nii.gz/SHA256E-s1089497--c983818f766bb944b5a536c96b3206c67d09e28be2920a6f7ff1f49e94b05963.nii.gz \ No newline at end of file diff --git a/sub-04/ses-003/func/sub-04_ses-003_task-s01e03a_bold.json b/sub-04/ses-003/func/sub-04_ses-003_task-s01e03a_bold.json index e81f4e5d5c3..46c68272e50 100644 --- a/sub-04/ses-003/func/sub-04_ses-003_task-s01e03a_bold.json +++ b/sub-04/ses-003/func/sub-04_ses-003_task-s01e03a_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "15:04:38.347500", + "AcquisitionTime": "14:36:44.437500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -45,29 +45,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e03a", + "ProtocolName": "func_task-s01e02a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0292715, + "SAR": 0.0292639, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e03a", - "SeriesNumber": 14, + "SeriesDescription": "func_task-s01e02a", + "SeriesNumber": 10, "ShimSetting": [604, -7266, -8827, 585, -45, -350, 0, 57], "SliceThickness": 2, - "SliceTiming": [0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875], + "SliceTiming": [0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.275, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.275, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.275, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.275, 0.5875, 1.3725, 0.685], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 217.311, - "WipMemBlock": "8eec473d-d4ba-438b-a060-3643e7f5ed69||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "559c425a-13b0-45be-8fd5-e671f1dd24b9||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9968676567077637, -0.004182097967714071, -0.1118132695555687, 101.43782043457031], [0.02099195308983326, 1.9491121768951416, -0.44779595732688904, -82.9533920288086], @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 503], + "dcmmeta_shape": [104, 104, 60, 472], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259141, + "ImagingFrequency": 123.259126, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e03a", + "ProtocolName": "func_task-s01e02a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.02927149622383, + "SAR": 0.02926393704185, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,9 +135,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e03a", - "SeriesNumber": 14, - "SeriesTime": "150539.527000", + "SeriesDescription": "func_task-s01e02a", + "SeriesNumber": 10, + "SeriesTime": "143804.979000", "SliceLocation": -32.308697552677, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -154,14 +154,14 @@ }, "time": { "samples": { - "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 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+../../../.git/annex/objects/Wf/QZ/SHA256E-s495546633--661c5527986e86de59d560ed7a65fdb3d64a59c3bdf70e0ed5e3af9fc0fb2a20.nii.gz/SHA256E-s495546633--661c5527986e86de59d560ed7a65fdb3d64a59c3bdf70e0ed5e3af9fc0fb2a20.nii.gz \ No newline at end of file diff --git a/sub-04/ses-003/func/sub-04_ses-003_task-s01e02a_bold__dup-01.json b/sub-04/ses-003/func/sub-04_ses-003_task-s01e03a_bold__dup-01.json similarity index 100% rename from sub-04/ses-003/func/sub-04_ses-003_task-s01e02a_bold__dup-01.json rename to sub-04/ses-003/func/sub-04_ses-003_task-s01e03a_bold__dup-01.json diff --git a/sub-04/ses-003/func/sub-04_ses-003_task-s01e02a_bold__dup-01.nii.gz b/sub-04/ses-003/func/sub-04_ses-003_task-s01e03a_bold__dup-01.nii.gz similarity index 100% rename from sub-04/ses-003/func/sub-04_ses-003_task-s01e02a_bold__dup-01.nii.gz rename to sub-04/ses-003/func/sub-04_ses-003_task-s01e03a_bold__dup-01.nii.gz diff --git a/sub-04/ses-003/func/sub-04_ses-003_task-s01e03a_sbref.json b/sub-04/ses-003/func/sub-04_ses-003_task-s01e03a_sbref.json index 7c3cecadce0..dfc21ae5952 100644 --- a/sub-04/ses-003/func/sub-04_ses-003_task-s01e03a_sbref.json +++ b/sub-04/ses-003/func/sub-04_ses-003_task-s01e03a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "15:04:27.917500", + "AcquisitionTime": "14:36:34.007500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e03a", + "ProtocolName": "func_task-s01e02a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0292715, + "SAR": 0.0292639, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e03a_SBRef", - "SeriesNumber": 13, + "SeriesDescription": "func_task-s01e02a_SBRef", + "SeriesNumber": 9, "ShimSetting": [604, -7266, -8827, 585, -45, -350, 0, 57], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.1975, 0.295, 0.3925, 0.49, 0.5875, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.135, 3.235, 3.3325, 3.43, 3.5275, 3.625, 3.725, 3.8225, 3.92, 4.0175, 4.115, 4.215, 4.3125, 4.41, 4.5075, 4.605, 4.705, 4.8025, 4.9, 4.9975, 5.095, 5.195, 5.2925, 5.39, 5.4875, 5.585, 5.685, 5.7825], + "SliceTiming": [0, 0.0975, 0.195, 0.295, 0.3925, 0.49, 0.5875, 0.685, 0.785, 0.8825, 0.98, 1.0775, 1.175, 1.275, 1.3725, 1.47, 1.5675, 1.665, 1.765, 1.8625, 1.96, 2.0575, 2.155, 2.255, 2.3525, 2.45, 2.5475, 2.645, 2.745, 2.8425, 2.94, 3.0375, 3.135, 3.235, 3.3325, 3.43, 3.5275, 3.625, 3.725, 3.8225, 3.92, 4.0175, 4.115, 4.215, 4.3125, 4.41, 4.5075, 4.605, 4.7025, 4.8025, 4.9, 4.9975, 5.095, 5.1925, 5.2925, 5.39, 5.4875, 5.585, 5.6825, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 217.311, - "WipMemBlock": "8eec473d-d4ba-438b-a060-3643e7f5ed69||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "559c425a-13b0-45be-8fd5-e671f1dd24b9||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9968676567077637, -0.004182097967714071, -0.1118132695555687, 101.43782043457031], [0.02099195308983326, 1.9491121768951416, -0.44779595732688904, -82.9533920288086], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "150427.917500", + "AcquisitionTime": "143634.007500", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "150539.496000", + "ContentTime": "143804.940000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259141, + "ImagingFrequency": 123.259126, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "150539.496000", + "InstanceCreationTime": "143804.940000", "InstanceNumber": 1, - "LargestImagePixelValue": 60627, + "LargestImagePixelValue": 60977, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e03a", + "ProtocolName": "func_task-s01e02a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.02927149622383, + "SAR": 0.02926393704185, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e03a_SBRef", - "SeriesNumber": 13, - "SeriesTime": "150539.493000", + "SeriesDescription": "func_task-s01e02a_SBRef", + "SeriesNumber": 9, + "SeriesTime": "143804.937000", "SliceLocation": -32.308697552677, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "141059.961000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 11728.0, - "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 24938.0, + "WindowCenter": 12159.0, + "WindowCenterWidthExplanation": "WINDOW1", + "WindowWidth": 32760.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-04/ses-003/func/sub-04_ses-003_task-s01e03a_sbref.nii.gz b/sub-04/ses-003/func/sub-04_ses-003_task-s01e03a_sbref.nii.gz index 0123025563b..4bcc066b7e6 120000 --- a/sub-04/ses-003/func/sub-04_ses-003_task-s01e03a_sbref.nii.gz +++ b/sub-04/ses-003/func/sub-04_ses-003_task-s01e03a_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/Q4/Q3/SHA256E-s1091674--acf7ca64d3e0ff7ed1b4b3a6f42984a7b4219362105a2fdf4a3d87ab6b70d3b7.nii.gz/SHA256E-s1091674--acf7ca64d3e0ff7ed1b4b3a6f42984a7b4219362105a2fdf4a3d87ab6b70d3b7.nii.gz \ No newline at end of file +../../../.git/annex/objects/5f/2K/SHA256E-s1088864--fed7539594e3faeff0ee64bdbafa1dc085a57c4e70f42e304266c734d8cf5b8f.nii.gz/SHA256E-s1088864--fed7539594e3faeff0ee64bdbafa1dc085a57c4e70f42e304266c734d8cf5b8f.nii.gz \ No newline at end of file diff --git a/sub-04/ses-003/func/sub-04_ses-003_task-s01e02a_sbref__dup-01.json b/sub-04/ses-003/func/sub-04_ses-003_task-s01e03a_sbref__dup-01.json similarity index 100% rename from sub-04/ses-003/func/sub-04_ses-003_task-s01e02a_sbref__dup-01.json rename to sub-04/ses-003/func/sub-04_ses-003_task-s01e03a_sbref__dup-01.json diff --git a/sub-04/ses-003/func/sub-04_ses-003_task-s01e02a_sbref__dup-01.nii.gz b/sub-04/ses-003/func/sub-04_ses-003_task-s01e03a_sbref__dup-01.nii.gz similarity index 100% rename from sub-04/ses-003/func/sub-04_ses-003_task-s01e02a_sbref__dup-01.nii.gz rename to sub-04/ses-003/func/sub-04_ses-003_task-s01e03a_sbref__dup-01.nii.gz diff --git a/sub-04/ses-003/func/sub-04_ses-003_task-s01e03b_bold.json b/sub-04/ses-003/func/sub-04_ses-003_task-s01e03b_bold.json index 1cf09e99afb..a0e730fe5f4 100644 --- a/sub-04/ses-003/func/sub-04_ses-003_task-s01e03b_bold.json +++ b/sub-04/ses-003/func/sub-04_ses-003_task-s01e03b_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "15:17:39.055000", + "AcquisitionTime": "14:48:58.502500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -45,19 +45,19 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e03b", + "ProtocolName": "func_task-s01e02b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0292715, + "SAR": 0.0292639, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e03b", - "SeriesNumber": 16, + "SeriesDescription": "func_task-s01e02b", + "SeriesNumber": 12, "ShimSetting": [604, -7266, -8827, 585, -45, -350, 0, 57], "SliceThickness": 2, "SliceTiming": [0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875], @@ -67,7 +67,7 @@ "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 217.311, - "WipMemBlock": "132f3f12-6fc5-4635-99be-dea15ec04a5e||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "dca82417-417b-4cd7-b495-6cd064faccf5||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9968676567077637, -0.004182097967714071, -0.1118132695555687, 101.43782043457031], [0.02099195308983326, 1.9491121768951416, -0.44779595732688904, -82.9533920288086], @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 503], + "dcmmeta_shape": [104, 104, 60, 472], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259142, + "ImagingFrequency": 123.259135, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e03b", + "ProtocolName": "func_task-s01e02b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.02927149622383, + "SAR": 0.02926393704185, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,9 +135,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e03b", - "SeriesNumber": 16, - "SeriesTime": "151904.971000", + "SeriesDescription": "func_task-s01e02b", + "SeriesNumber": 12, + "SeriesTime": "145029.689000", "SliceLocation": -32.308697552677, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -154,14 +154,14 @@ }, "time": { "samples": { - "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259, 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272, 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285, 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 302, 303, 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20247.0, 20228.0, 20196.0, 20178.0, 20224.0, 20275.0, 20298.0, 20252.0, 20192.0] }, "slices": {} } diff --git a/sub-04/ses-003/func/sub-04_ses-003_task-s01e03b_bold.nii.gz b/sub-04/ses-003/func/sub-04_ses-003_task-s01e03b_bold.nii.gz index 549f2d5617a..51e1c280db9 120000 --- a/sub-04/ses-003/func/sub-04_ses-003_task-s01e03b_bold.nii.gz +++ b/sub-04/ses-003/func/sub-04_ses-003_task-s01e03b_bold.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/jM/mZ/SHA256E-s530555320--25ed0ae65c8ab7c361b56c09cba30bb6f0d37c018f1c0f0813631338ad057998.nii.gz/SHA256E-s530555320--25ed0ae65c8ab7c361b56c09cba30bb6f0d37c018f1c0f0813631338ad057998.nii.gz \ No newline at end of file +../../../.git/annex/objects/kG/m5/SHA256E-s495716817--7e2ccb77db097df66510c93c167fbfa298c6eaa43db0666caf7e3e727f2c9d45.nii.gz/SHA256E-s495716817--7e2ccb77db097df66510c93c167fbfa298c6eaa43db0666caf7e3e727f2c9d45.nii.gz \ No newline at end of file diff --git a/sub-04/ses-003/func/sub-04_ses-003_task-s01e03b_sbref.json b/sub-04/ses-003/func/sub-04_ses-003_task-s01e03b_sbref.json index cca5ec975ba..c51b68a124d 100644 --- a/sub-04/ses-003/func/sub-04_ses-003_task-s01e03b_sbref.json +++ b/sub-04/ses-003/func/sub-04_ses-003_task-s01e03b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "15:17:28.625000", + "AcquisitionTime": "14:48:48.072500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e03b", + "ProtocolName": "func_task-s01e02b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0292715, + "SAR": 0.0292639, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e03b_SBRef", - "SeriesNumber": 15, + "SeriesDescription": "func_task-s01e02b_SBRef", + "SeriesNumber": 11, "ShimSetting": [604, -7266, -8827, 585, -45, -350, 0, 57], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.1975, 0.295, 0.3925, 0.49, 0.5875, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.665, 1.765, 1.8625, 1.96, 2.0575, 2.155, 2.255, 2.3525, 2.45, 2.5475, 2.645, 2.745, 2.8425, 2.94, 3.0375, 3.135, 3.235, 3.3325, 3.43, 3.5275, 3.625, 3.725, 3.8225, 3.92, 4.0175, 4.115, 4.215, 4.3125, 4.41, 4.5075, 4.605, 4.705, 4.8025, 4.9, 4.9975, 5.095, 5.195, 5.2925, 5.39, 5.4875, 5.585, 5.685, 5.7825], + "SliceTiming": [0, 0.0975, 0.1975, 0.295, 0.3925, 0.49, 0.5875, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.115, 4.215, 4.3125, 4.41, 4.5075, 4.605, 4.705, 4.8025, 4.9, 4.9975, 5.095, 5.195, 5.2925, 5.39, 5.4875, 5.585, 5.685, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 217.311, - "WipMemBlock": "132f3f12-6fc5-4635-99be-dea15ec04a5e||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "dca82417-417b-4cd7-b495-6cd064faccf5||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9968676567077637, -0.004182097967714071, -0.1118132695555687, 101.43782043457031], [0.02099195308983326, 1.9491121768951416, -0.44779595732688904, -82.9533920288086], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "151728.625000", + "AcquisitionTime": "144848.072500", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "151904.940000", + "ContentTime": "145029.664000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259142, + "ImagingFrequency": 123.259135, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "151904.940000", + "InstanceCreationTime": "145029.664000", "InstanceNumber": 1, - "LargestImagePixelValue": 56445, + "LargestImagePixelValue": 60037, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e03b", + "ProtocolName": "func_task-s01e02b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.02927149622383, + "SAR": 0.02926393704185, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e03b_SBRef", - "SeriesNumber": 15, - "SeriesTime": "151904.937000", + "SeriesDescription": "func_task-s01e02b_SBRef", + "SeriesNumber": 11, + "SeriesTime": "145029.660000", "SliceLocation": -32.308697552677, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "141059.961000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 11603.0, + "WindowCenter": 11577.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 24633.0, + "WindowWidth": 24547.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-04/ses-003/func/sub-04_ses-003_task-s01e03b_sbref.nii.gz b/sub-04/ses-003/func/sub-04_ses-003_task-s01e03b_sbref.nii.gz index d374b6fc434..b12d320715b 120000 --- a/sub-04/ses-003/func/sub-04_ses-003_task-s01e03b_sbref.nii.gz +++ b/sub-04/ses-003/func/sub-04_ses-003_task-s01e03b_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/M6/FJ/SHA256E-s1091600--aa1769a8f5b94f75db2d2ab92cf22d54e896cdac9a4d7c8e6dbc063911a0dc2d.nii.gz/SHA256E-s1091600--aa1769a8f5b94f75db2d2ab92cf22d54e896cdac9a4d7c8e6dbc063911a0dc2d.nii.gz \ No newline at end of file +../../../.git/annex/objects/Px/Fx/SHA256E-s1089497--c983818f766bb944b5a536c96b3206c67d09e28be2920a6f7ff1f49e94b05963.nii.gz/SHA256E-s1089497--c983818f766bb944b5a536c96b3206c67d09e28be2920a6f7ff1f49e94b05963.nii.gz \ No newline at end of file diff --git a/sub-04/ses-003/func/sub-04_ses-003_task-s01e04a_bold.json b/sub-04/ses-003/func/sub-04_ses-003_task-s01e04a_bold.json new file mode 100644 index 00000000000..e81f4e5d5c3 --- /dev/null +++ b/sub-04/ses-003/func/sub-04_ses-003_task-s01e04a_bold.json @@ -0,0 +1,168 @@ +{ + "AcquisitionMatrixPE": 104, + "AcquisitionNumber": 1, + "AcquisitionTime": "15:04:38.347500", + "BandwidthPerPixelPhaseEncode": 17.17, + "BaseResolution": 104, + "BodyPartExamined": "BRAIN", + "CoilString": "HC1-7;NC1_2", + "ConsistencyInfo": "N4_VE11C_LATEST_20160120", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", + "DerivedVendorReportedEchoSpacing": 0.000560011, + "DeviceSerialNumber": "167006", + "DwellTime": 2.1e-06, + "EchoTime": 0.037, + "EchoTrainLength": 104, + "EffectiveEchoSpacing": 0.000560011, + "FlipAngle": 52, + "ImageComments": "Unaliased_MB4_PE3_LB", + "ImageOrientationPatientDICOM": [0.998434, -0.010496, -0.0549523, -0.00209105, 0.974556, -0.224134], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagingFrequency": 123.259, + "InPlanePhaseEncodingDirectionDICOM": "COL", + "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", + "InstitutionName": "IUGM", + "InstitutionalDepartmentName": "Department", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma_fit", + "Modality": "MR", + "MultibandAccelerationFactor": 4, + "PartialFourier": 1, + "PatientPosition": "HFS", + "PercentPhaseFOV": 100, + "PhaseEncodingDirection": "j", + "PhaseEncodingSteps": 104, + "PhaseResolution": 1, + "PixelBandwidth": 2290, + "ProcedureStepDescription": "video_friends", + "ProtocolName": "func_task-s01e03a", + "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", + "ReceiveCoilActiveElements": "HC1-7;NC1,2", + "ReceiveCoilName": "HeadNeck_64", + "ReconMatrixPE": 104, + "RepetitionTime": 1.49, + "SAR": 0.0292715, + "ScanOptions": "FS", + "ScanningSequence": "EP", + "SequenceName": "epfid2d1_104", + "SequenceVariant": "SK_SS", + "SeriesDescription": "func_task-s01e03a", + "SeriesNumber": 14, + "ShimSetting": [604, -7266, -8827, 585, -45, -350, 0, 57], + "SliceThickness": 2, + "SliceTiming": [0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875], + "SoftwareVersions": "syngo_MR_E11", + "SpacingBetweenSlices": 2, + "StationName": "MRC35049", + "TaskName": "friends", + "TotalReadoutTime": 0.0576811, + "TxRefAmp": 217.311, + "WipMemBlock": "8eec473d-d4ba-438b-a060-3643e7f5ed69||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "dcmmeta_affine": [ + [-1.9968676567077637, -0.004182097967714071, -0.1118132695555687, 101.43782043457031], + [0.02099195308983326, 1.9491121768951416, -0.44779595732688904, -82.9533920288086], + [-0.10990466177463531, 0.44826820492744446, 1.9460155963897705, -46.46493911743164], + [0.0, 0.0, 0.0, 1.0] +], + "dcmmeta_reorient_transform": [ + [0.0, -1.0, 0.0, 103.0], + [1.0, 0.0, 0.0, 0.0], + [0.0, 0.0, 1.0, 0.0], + [0.0, 0.0, 0.0, 1.0] +], + "dcmmeta_shape": [104, 104, 60, 503], + "dcmmeta_slice_dim": 2, + "dcmmeta_version": 0.6, + "global": { + "const": { + "AcquisitionMatrix": [104, 0, 0, 104], + "AngioFlag": "N", + "BitsAllocated": 16, + "BitsStored": 16, + "BodyPartExamined": "BRAIN", + "Columns": 832, + "EchoNumbers": 1, + "EchoTime": 37.0, + "EchoTrainLength": 104, + "FlipAngle": 52.0, + "HighBit": 15, + "ImageOrientationPatient": [0.99843381141626, -0.010495976482, -0.0549523311469, -0.0020910490054, 0.97455606824319, -0.2241341057591], + "ImagePositionPatient": [-826.34459778805, -819.64090596748, 202.8816133513], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagedNucleus": "1H", + "ImagingFrequency": 123.259141, + "InPlanePhaseEncodingDirection": "COL", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3.0, + "Manufacturer": "SIEMENS", + "ManufacturerModelName": "Prisma_fit", + "Modality": "MR", + "NumberOfAverages": 1.0, + "NumberOfPhaseEncodingSteps": 104, + "PercentPhaseFieldOfView": 100.0, + "PercentSampling": 100.0, + "PerformedProcedureStepStartTime": "141100.045000", + "PhotometricInterpretation": "MONOCHROME2", + "PixelBandwidth": 2290.0, + "PixelRepresentation": 0, + "PixelSpacing": [2.0, 2.0], + "ProtocolName": "func_task-s01e03a", + "RepetitionTime": 1490.0, + "Rows": 832, + "SAR": 0.02927149622383, + "SamplesPerPixel": 1, + "ScanOptions": "FS", + "ScanningSequence": "EP", + "SequenceName": "epfid2d1_104", + "SequenceVariant": [ + "SK", + "SS" +], + "SeriesDescription": "func_task-s01e03a", + "SeriesNumber": 14, + "SeriesTime": "150539.527000", + "SliceLocation": -32.308697552677, + "SliceThickness": 2.0, + "SmallestImagePixelValue": 0, + "SoftwareVersions": "syngo MR E11", + "SpacingBetweenSlices": 2.0000000643943, + "SpecificCharacterSet": "ISO_IR 100", + "StudyID": "1", + "StudyTime": "141059.961000", + "TransmitCoilName": "Body", + "VariableFlipAngleFlag": "N", + "WindowCenterWidthExplanation": "Algo1", + "dBdt": 0.0}, + "slices": {} + }, + "time": { + "samples": { + "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 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20367.0, 20356.0, 20389.0, 20424.0, 20433.0, 20394.0, 20358.0, 20331.0, 20341.0, 20365.0, 20397.0, 20407.0, 20412.0, 20410.0, 20421.0, 20395.0] + }, + "slices": {} + } +} \ No newline at end of file diff --git a/sub-04/ses-003/func/sub-04_ses-003_task-s01e04a_bold.nii.gz b/sub-04/ses-003/func/sub-04_ses-003_task-s01e04a_bold.nii.gz new file mode 120000 index 00000000000..b2f98807d01 --- /dev/null +++ b/sub-04/ses-003/func/sub-04_ses-003_task-s01e04a_bold.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/Kf/0j/SHA256E-s529820108--bd891ed201fbc64fd627b476cfea48a637f710fa1adcb2df5c5037804941c718.nii.gz/SHA256E-s529820108--bd891ed201fbc64fd627b476cfea48a637f710fa1adcb2df5c5037804941c718.nii.gz \ No newline at end of file diff --git a/sub-04/ses-003/func/sub-04_ses-003_task-s01e02b_sbref.json b/sub-04/ses-003/func/sub-04_ses-003_task-s01e04a_sbref.json similarity index 83% rename from sub-04/ses-003/func/sub-04_ses-003_task-s01e02b_sbref.json rename to sub-04/ses-003/func/sub-04_ses-003_task-s01e04a_sbref.json index c51b68a124d..7c3cecadce0 100644 --- a/sub-04/ses-003/func/sub-04_ses-003_task-s01e02b_sbref.json +++ b/sub-04/ses-003/func/sub-04_ses-003_task-s01e04a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "14:48:48.072500", + "AcquisitionTime": "15:04:27.917500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e02b", + "ProtocolName": "func_task-s01e03a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0292639, + "SAR": 0.0292715, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e02b_SBRef", - "SeriesNumber": 11, + "SeriesDescription": "func_task-s01e03a_SBRef", + "SeriesNumber": 13, "ShimSetting": [604, -7266, -8827, 585, -45, -350, 0, 57], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.1975, 0.295, 0.3925, 0.49, 0.5875, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.115, 4.215, 4.3125, 4.41, 4.5075, 4.605, 4.705, 4.8025, 4.9, 4.9975, 5.095, 5.195, 5.2925, 5.39, 5.4875, 5.585, 5.685, 5.7825], + "SliceTiming": [0, 0.0975, 0.1975, 0.295, 0.3925, 0.49, 0.5875, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.135, 3.235, 3.3325, 3.43, 3.5275, 3.625, 3.725, 3.8225, 3.92, 4.0175, 4.115, 4.215, 4.3125, 4.41, 4.5075, 4.605, 4.705, 4.8025, 4.9, 4.9975, 5.095, 5.195, 5.2925, 5.39, 5.4875, 5.585, 5.685, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 217.311, - "WipMemBlock": "dca82417-417b-4cd7-b495-6cd064faccf5||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "8eec473d-d4ba-438b-a060-3643e7f5ed69||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9968676567077637, -0.004182097967714071, -0.1118132695555687, 101.43782043457031], [0.02099195308983326, 1.9491121768951416, -0.44779595732688904, -82.9533920288086], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "144848.072500", + "AcquisitionTime": "150427.917500", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "145029.664000", + "ContentTime": "150539.496000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259135, + "ImagingFrequency": 123.259141, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "145029.664000", + "InstanceCreationTime": "150539.496000", "InstanceNumber": 1, - "LargestImagePixelValue": 60037, + "LargestImagePixelValue": 60627, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e02b", + "ProtocolName": "func_task-s01e03a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.02926393704185, + "SAR": 0.02927149622383, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e02b_SBRef", - "SeriesNumber": 11, - "SeriesTime": "145029.660000", + "SeriesDescription": "func_task-s01e03a_SBRef", + "SeriesNumber": 13, + "SeriesTime": "150539.493000", "SliceLocation": -32.308697552677, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "141059.961000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 11577.0, + "WindowCenter": 11728.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 24547.0, + "WindowWidth": 24938.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-04/ses-003/func/sub-04_ses-003_task-s01e04a_sbref.nii.gz b/sub-04/ses-003/func/sub-04_ses-003_task-s01e04a_sbref.nii.gz new file mode 120000 index 00000000000..0123025563b --- /dev/null +++ b/sub-04/ses-003/func/sub-04_ses-003_task-s01e04a_sbref.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/Q4/Q3/SHA256E-s1091674--acf7ca64d3e0ff7ed1b4b3a6f42984a7b4219362105a2fdf4a3d87ab6b70d3b7.nii.gz/SHA256E-s1091674--acf7ca64d3e0ff7ed1b4b3a6f42984a7b4219362105a2fdf4a3d87ab6b70d3b7.nii.gz \ No newline at end of file diff --git a/sub-04/ses-003/func/sub-04_ses-003_task-s01e04b_bold.json b/sub-04/ses-003/func/sub-04_ses-003_task-s01e04b_bold.json new file mode 100644 index 00000000000..1cf09e99afb --- /dev/null +++ b/sub-04/ses-003/func/sub-04_ses-003_task-s01e04b_bold.json @@ -0,0 +1,168 @@ +{ + "AcquisitionMatrixPE": 104, + "AcquisitionNumber": 1, + "AcquisitionTime": "15:17:39.055000", + "BandwidthPerPixelPhaseEncode": 17.17, + "BaseResolution": 104, + "BodyPartExamined": "BRAIN", + "CoilString": "HC1-7;NC1_2", + "ConsistencyInfo": "N4_VE11C_LATEST_20160120", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", + "DerivedVendorReportedEchoSpacing": 0.000560011, + "DeviceSerialNumber": "167006", + "DwellTime": 2.1e-06, + "EchoTime": 0.037, + "EchoTrainLength": 104, + "EffectiveEchoSpacing": 0.000560011, + "FlipAngle": 52, + "ImageComments": "Unaliased_MB4_PE3_LB", + "ImageOrientationPatientDICOM": [0.998434, -0.010496, -0.0549523, -0.00209105, 0.974556, -0.224134], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagingFrequency": 123.259, + "InPlanePhaseEncodingDirectionDICOM": "COL", + "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", + "InstitutionName": "IUGM", + "InstitutionalDepartmentName": "Department", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma_fit", + "Modality": "MR", + "MultibandAccelerationFactor": 4, + "PartialFourier": 1, + "PatientPosition": "HFS", + "PercentPhaseFOV": 100, + "PhaseEncodingDirection": "j", + "PhaseEncodingSteps": 104, + "PhaseResolution": 1, + "PixelBandwidth": 2290, + "ProcedureStepDescription": "video_friends", + "ProtocolName": "func_task-s01e03b", + "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", + "ReceiveCoilActiveElements": "HC1-7;NC1,2", + "ReceiveCoilName": "HeadNeck_64", + "ReconMatrixPE": 104, + "RepetitionTime": 1.49, + "SAR": 0.0292715, + "ScanOptions": "FS", + "ScanningSequence": "EP", + "SequenceName": "epfid2d1_104", + "SequenceVariant": "SK_SS", + "SeriesDescription": "func_task-s01e03b", + "SeriesNumber": 16, + "ShimSetting": [604, -7266, -8827, 585, -45, -350, 0, 57], + "SliceThickness": 2, + "SliceTiming": [0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875], + 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b/sub-04/ses-003/func/sub-04_ses-003_task-s01e04b_bold.nii.gz new file mode 120000 index 00000000000..549f2d5617a --- /dev/null +++ b/sub-04/ses-003/func/sub-04_ses-003_task-s01e04b_bold.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/jM/mZ/SHA256E-s530555320--25ed0ae65c8ab7c361b56c09cba30bb6f0d37c018f1c0f0813631338ad057998.nii.gz/SHA256E-s530555320--25ed0ae65c8ab7c361b56c09cba30bb6f0d37c018f1c0f0813631338ad057998.nii.gz \ No newline at end of file diff --git a/sub-04/ses-003/func/sub-04_ses-003_task-s01e02a_sbref.json b/sub-04/ses-003/func/sub-04_ses-003_task-s01e04b_sbref.json similarity index 79% rename from sub-04/ses-003/func/sub-04_ses-003_task-s01e02a_sbref.json rename to sub-04/ses-003/func/sub-04_ses-003_task-s01e04b_sbref.json index dfc21ae5952..cca5ec975ba 100644 --- a/sub-04/ses-003/func/sub-04_ses-003_task-s01e02a_sbref.json +++ b/sub-04/ses-003/func/sub-04_ses-003_task-s01e04b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "14:36:34.007500", + "AcquisitionTime": "15:17:28.625000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e02a", + "ProtocolName": "func_task-s01e03b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0292639, + "SAR": 0.0292715, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e02a_SBRef", - "SeriesNumber": 9, + "SeriesDescription": "func_task-s01e03b_SBRef", + "SeriesNumber": 15, "ShimSetting": [604, -7266, -8827, 585, -45, -350, 0, 57], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.295, 0.3925, 0.49, 0.5875, 0.685, 0.785, 0.8825, 0.98, 1.0775, 1.175, 1.275, 1.3725, 1.47, 1.5675, 1.665, 1.765, 1.8625, 1.96, 2.0575, 2.155, 2.255, 2.3525, 2.45, 2.5475, 2.645, 2.745, 2.8425, 2.94, 3.0375, 3.135, 3.235, 3.3325, 3.43, 3.5275, 3.625, 3.725, 3.8225, 3.92, 4.0175, 4.115, 4.215, 4.3125, 4.41, 4.5075, 4.605, 4.7025, 4.8025, 4.9, 4.9975, 5.095, 5.1925, 5.2925, 5.39, 5.4875, 5.585, 5.6825, 5.7825], + "SliceTiming": [0, 0.0975, 0.1975, 0.295, 0.3925, 0.49, 0.5875, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.665, 1.765, 1.8625, 1.96, 2.0575, 2.155, 2.255, 2.3525, 2.45, 2.5475, 2.645, 2.745, 2.8425, 2.94, 3.0375, 3.135, 3.235, 3.3325, 3.43, 3.5275, 3.625, 3.725, 3.8225, 3.92, 4.0175, 4.115, 4.215, 4.3125, 4.41, 4.5075, 4.605, 4.705, 4.8025, 4.9, 4.9975, 5.095, 5.195, 5.2925, 5.39, 5.4875, 5.585, 5.685, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 217.311, - "WipMemBlock": "559c425a-13b0-45be-8fd5-e671f1dd24b9||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "132f3f12-6fc5-4635-99be-dea15ec04a5e||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9968676567077637, -0.004182097967714071, -0.1118132695555687, 101.43782043457031], [0.02099195308983326, 1.9491121768951416, -0.44779595732688904, -82.9533920288086], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "143634.007500", + "AcquisitionTime": "151728.625000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "143804.940000", + "ContentTime": "151904.940000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259126, + "ImagingFrequency": 123.259142, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "143804.940000", + "InstanceCreationTime": "151904.940000", "InstanceNumber": 1, - "LargestImagePixelValue": 60977, + "LargestImagePixelValue": 56445, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e02a", + "ProtocolName": "func_task-s01e03b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.02926393704185, + "SAR": 0.02927149622383, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e02a_SBRef", - "SeriesNumber": 9, - "SeriesTime": "143804.937000", + "SeriesDescription": "func_task-s01e03b_SBRef", + "SeriesNumber": 15, + "SeriesTime": "151904.937000", "SliceLocation": -32.308697552677, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "141059.961000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12159.0, - "WindowCenterWidthExplanation": "WINDOW1", - "WindowWidth": 32760.0, + "WindowCenter": 11603.0, + "WindowCenterWidthExplanation": "Algo1", + "WindowWidth": 24633.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-04/ses-003/func/sub-04_ses-003_task-s01e04b_sbref.nii.gz b/sub-04/ses-003/func/sub-04_ses-003_task-s01e04b_sbref.nii.gz new file mode 120000 index 00000000000..d374b6fc434 --- /dev/null +++ b/sub-04/ses-003/func/sub-04_ses-003_task-s01e04b_sbref.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/M6/FJ/SHA256E-s1091600--aa1769a8f5b94f75db2d2ab92cf22d54e896cdac9a4d7c8e6dbc063911a0dc2d.nii.gz/SHA256E-s1091600--aa1769a8f5b94f75db2d2ab92cf22d54e896cdac9a4d7c8e6dbc063911a0dc2d.nii.gz \ No newline at end of file diff --git a/sub-04/ses-004/func/sub-04_ses-004_task-s01e04a_bold.json b/sub-04/ses-004/func/sub-04_ses-004_task-s01e04a_bold.json deleted file mode 100644 index b8fab7be853..00000000000 --- a/sub-04/ses-004/func/sub-04_ses-004_task-s01e04a_bold.json +++ /dev/null @@ -1,168 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "10:18:28.187500", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": "167006", - "DwellTime": 2.1e-06, - "EchoTime": 0.037, - "EchoTrainLength": 104, - "EffectiveEchoSpacing": 0.000560011, - "FlipAngle": 52, - "ImageComments": "Unaliased_MB4_PE3_LB", - "ImageOrientationPatientDICOM": [0.996846, 0.0173463, -0.0774415, -0.0348106, 0.972507, -0.230256], - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "MB", - "ND", - "MOSAIC" -], - "ImagingFrequency": 123.259, - "InPlanePhaseEncodingDirectionDICOM": "COL", - 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a/sub-04/ses-004/func/sub-04_ses-004_task-s01e04b_sbref.nii.gz b/sub-04/ses-004/func/sub-04_ses-004_task-s01e04b_sbref.nii.gz deleted file mode 120000 index 356e8eeb347..00000000000 --- a/sub-04/ses-004/func/sub-04_ses-004_task-s01e04b_sbref.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/pX/jP/SHA256E-s1091944--a8c5935a40eab1c7720053551a14f77a1ce3e9d7a3113fbdd33e83f0d6c56818.nii.gz/SHA256E-s1091944--a8c5935a40eab1c7720053551a14f77a1ce3e9d7a3113fbdd33e83f0d6c56818.nii.gz \ No newline at end of file diff --git a/sub-04/ses-004/func/sub-04_ses-004_task-s01e05a_bold.json b/sub-04/ses-004/func/sub-04_ses-004_task-s01e05a_bold.json index 977758655ca..b8fab7be853 100644 --- a/sub-04/ses-004/func/sub-04_ses-004_task-s01e05a_bold.json +++ b/sub-04/ses-004/func/sub-04_ses-004_task-s01e05a_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "10:42:50.652500", + "AcquisitionTime": "10:18:28.187500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -45,29 +45,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e05a", + "ProtocolName": "func_task-s01e04a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0337331, + "SAR": 0.0337273, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e05a", - "SeriesNumber": 13, + "SeriesDescription": "func_task-s01e04a", + "SeriesNumber": 9, "ShimSetting": [597, -7253, -8839, 558, -49, -264, 7, 58], "SliceThickness": 2, - "SliceTiming": [0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685], + "SliceTiming": [0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 220.08, - "WipMemBlock": "c8d37070-e52e-4b3e-9d42-c27d838d5a99||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "636e48e8-9374-41a0-ba9f-6f31becfaad4||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9936919212341309, -0.069621242582798, -0.1426365226507187, 105.87299346923828], [-0.0346926674246788, 1.9450143575668335, -0.4644520580768585, -80.86349487304688], @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 488], + "dcmmeta_shape": [104, 104, 60, 468], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.25914, + "ImagingFrequency": 123.259124, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e05a", + "ProtocolName": "func_task-s01e04a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.0337330932512, + "SAR": 0.033727254714, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,9 +135,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e05a", - "SeriesNumber": 13, - "SeriesTime": "104416.830000", + "SeriesDescription": "func_task-s01e04a", + "SeriesNumber": 9, + "SeriesTime": "101946.177000", "SliceLocation": -36.068780439971, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -154,14 +154,14 @@ }, "time": { "samples": { - "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 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+../../../.git/annex/objects/mK/4z/SHA256E-s493132873--657ea172e6ec2cf63ee51753dbf9eaf69f2de38d208453c72105420e99429391.nii.gz/SHA256E-s493132873--657ea172e6ec2cf63ee51753dbf9eaf69f2de38d208453c72105420e99429391.nii.gz \ No newline at end of file diff --git a/sub-04/ses-004/func/sub-04_ses-004_task-s01e05a_sbref.json b/sub-04/ses-004/func/sub-04_ses-004_task-s01e05a_sbref.json index 99590f7ceed..12d08a2581c 100644 --- a/sub-04/ses-004/func/sub-04_ses-004_task-s01e05a_sbref.json +++ b/sub-04/ses-004/func/sub-04_ses-004_task-s01e05a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "10:42:40.222500", + "AcquisitionTime": "10:18:17.757500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e05a", + "ProtocolName": "func_task-s01e04a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0337331, + "SAR": 0.0337273, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e05a_SBRef", - "SeriesNumber": 12, + "SeriesDescription": "func_task-s01e04a_SBRef", + "SeriesNumber": 8, "ShimSetting": [597, -7253, -8839, 558, -49, -264, 7, 58], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.295, 0.3925, 0.49, 0.5875, 0.685, 0.785, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.3125, 4.41, 4.5075, 4.605, 4.7025, 4.8025, 4.9, 4.9975, 5.095, 5.1925, 5.2925, 5.39, 5.4875, 5.585, 5.6825, 5.7825], + "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.3925, 0.49, 0.5875, 0.685, 0.7825, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.31, 4.41, 4.5075, 4.605, 4.7025, 4.8, 4.9, 4.9975, 5.095, 5.1925, 5.29, 5.39, 5.4875, 5.585, 5.6825, 5.78], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 220.08, - "WipMemBlock": "c8d37070-e52e-4b3e-9d42-c27d838d5a99||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "636e48e8-9374-41a0-ba9f-6f31becfaad4||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9936919212341309, -0.069621242582798, -0.1426365226507187, 105.87299346923828], [-0.0346926674246788, 1.9450143575668335, -0.4644520580768585, -80.86349487304688], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "104240.222500", + "AcquisitionTime": "101817.757500", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "104416.792000", + "ContentTime": "101946.154000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.25914, + "ImagingFrequency": 123.259124, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "104416.792000", + "InstanceCreationTime": "101946.154000", "InstanceNumber": 1, - "LargestImagePixelValue": 65535, + "LargestImagePixelValue": 59542, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e05a", + "ProtocolName": "func_task-s01e04a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.0337330932512, + "SAR": 0.033727254714, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e05a_SBRef", - "SeriesNumber": 12, - "SeriesTime": "104416.789000", + "SeriesDescription": "func_task-s01e04a_SBRef", + "SeriesNumber": 8, + "SeriesTime": "101946.151000", "SliceLocation": -36.068780439971, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "100210.056000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 11876.0, + "WindowCenter": 11766.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 25414.0, + "WindowWidth": 25137.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-04/ses-004/func/sub-04_ses-004_task-s01e05a_sbref.nii.gz b/sub-04/ses-004/func/sub-04_ses-004_task-s01e05a_sbref.nii.gz index 1bd80817d55..653ad2b8325 120000 --- a/sub-04/ses-004/func/sub-04_ses-004_task-s01e05a_sbref.nii.gz +++ b/sub-04/ses-004/func/sub-04_ses-004_task-s01e05a_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/14/P6/SHA256E-s1093418--4b0e13556ca6d4df04a82878ca3a2aea26536f6b81085829a8c4d058e75ced77.nii.gz/SHA256E-s1093418--4b0e13556ca6d4df04a82878ca3a2aea26536f6b81085829a8c4d058e75ced77.nii.gz \ No newline at end of file +../../../.git/annex/objects/7F/4F/SHA256E-s1090891--29caad27617120230131e509d7233da267f28352ec3604b39eeb4da51a6a38ba.nii.gz/SHA256E-s1090891--29caad27617120230131e509d7233da267f28352ec3604b39eeb4da51a6a38ba.nii.gz \ No newline at end of file diff --git a/sub-04/ses-004/func/sub-04_ses-004_task-s01e05b_bold.json b/sub-04/ses-004/func/sub-04_ses-004_task-s01e05b_bold.json index ab3b4d5273a..e59505ba2cf 100644 --- a/sub-04/ses-004/func/sub-04_ses-004_task-s01e05b_bold.json +++ b/sub-04/ses-004/func/sub-04_ses-004_task-s01e05b_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "10:57:47.402500", + "AcquisitionTime": "10:30:30.705000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -45,29 +45,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e05b", + "ProtocolName": "func_task-s01e04b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0337331, + "SAR": 0.0337273, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e05b", - "SeriesNumber": 15, + "SeriesDescription": "func_task-s01e04b", + "SeriesNumber": 11, "ShimSetting": [597, -7253, -8839, 558, -49, -264, 7, 58], "SliceThickness": 2, - "SliceTiming": [0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875], + "SliceTiming": [0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 220.08, - "WipMemBlock": "5614e2fb-a431-42fb-b910-70559f21a215||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "1ff70d5d-efae-445e-9787-3fbae5bcfe97||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9936919212341309, -0.069621242582798, -0.1426365226507187, 105.87299346923828], [-0.0346926674246788, 1.9450143575668335, -0.4644520580768585, -80.86349487304688], @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 488], + "dcmmeta_shape": [104, 104, 60, 468], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259143, + "ImagingFrequency": 123.259134, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e05b", + "ProtocolName": "func_task-s01e04b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.0337330932512, + "SAR": 0.033727254714, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,9 +135,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e05b", - "SeriesNumber": 15, - "SeriesTime": "105846.188000", + "SeriesDescription": "func_task-s01e04b", + "SeriesNumber": 11, + "SeriesTime": "103146.066000", "SliceLocation": -36.068780439971, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -154,14 +154,14 @@ }, "time": { "samples": { - "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 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at end of file +../../../.git/annex/objects/1k/08/SHA256E-s493593465--043114570bb117ac50f7caae559e65374a056399b6e93e8eb98305f27a048fcc.nii.gz/SHA256E-s493593465--043114570bb117ac50f7caae559e65374a056399b6e93e8eb98305f27a048fcc.nii.gz \ No newline at end of file diff --git a/sub-04/ses-004/func/sub-04_ses-004_task-s01e05b_sbref.json b/sub-04/ses-004/func/sub-04_ses-004_task-s01e05b_sbref.json index 424e6ff216c..aa5a35b6645 100644 --- a/sub-04/ses-004/func/sub-04_ses-004_task-s01e05b_sbref.json +++ b/sub-04/ses-004/func/sub-04_ses-004_task-s01e05b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "10:57:36.972500", + "AcquisitionTime": "10:30:20.275000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e05b", + "ProtocolName": "func_task-s01e04b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0337331, + "SAR": 0.0337273, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e05b_SBRef", - "SeriesNumber": 14, + "SeriesDescription": "func_task-s01e04b_SBRef", + "SeriesNumber": 10, "ShimSetting": [597, -7253, -8839, 558, -49, -264, 7, 58], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.1975, 0.295, 0.3925, 0.49, 0.5875, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.095, 5.195, 5.2925, 5.39, 5.4875, 5.585, 5.685, 5.7825], + "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.08, 1.1775, 1.275, 1.3725, 1.47, 1.57, 1.6675, 1.765, 1.8625, 1.96, 2.06, 2.1575, 2.255, 2.3525, 2.45, 2.55, 2.6475, 2.745, 2.8425, 2.94, 3.04, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 220.08, - "WipMemBlock": "5614e2fb-a431-42fb-b910-70559f21a215||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "1ff70d5d-efae-445e-9787-3fbae5bcfe97||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9936919212341309, -0.069621242582798, -0.1426365226507187, 105.87299346923828], [-0.0346926674246788, 1.9450143575668335, -0.4644520580768585, -80.86349487304688], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "105736.972500", + "AcquisitionTime": "103020.275000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "105846.155000", + "ContentTime": "103146.034000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259143, + "ImagingFrequency": 123.259134, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "105846.155000", + "InstanceCreationTime": "103146.034000", "InstanceNumber": 1, - "LargestImagePixelValue": 65535, + "LargestImagePixelValue": 63139, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e05b", + "ProtocolName": "func_task-s01e04b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.0337330932512, + "SAR": 0.033727254714, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e05b_SBRef", - "SeriesNumber": 14, - "SeriesTime": "105846.152000", + "SeriesDescription": "func_task-s01e04b_SBRef", + "SeriesNumber": 10, + "SeriesTime": "103146.030000", "SliceLocation": -36.068780439971, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "100210.056000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 11818.0, + "WindowCenter": 11799.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 25260.0, + "WindowWidth": 25214.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-04/ses-004/func/sub-04_ses-004_task-s01e05b_sbref.nii.gz b/sub-04/ses-004/func/sub-04_ses-004_task-s01e05b_sbref.nii.gz index 249ab5a0580..356e8eeb347 120000 --- a/sub-04/ses-004/func/sub-04_ses-004_task-s01e05b_sbref.nii.gz +++ b/sub-04/ses-004/func/sub-04_ses-004_task-s01e05b_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/Jz/zG/SHA256E-s1093084--9f9e69ecc2491adc47611540e2003772ed12cf7ae75db865ef18f0675c5cb4fd.nii.gz/SHA256E-s1093084--9f9e69ecc2491adc47611540e2003772ed12cf7ae75db865ef18f0675c5cb4fd.nii.gz \ No newline at end of file +../../../.git/annex/objects/pX/jP/SHA256E-s1091944--a8c5935a40eab1c7720053551a14f77a1ce3e9d7a3113fbdd33e83f0d6c56818.nii.gz/SHA256E-s1091944--a8c5935a40eab1c7720053551a14f77a1ce3e9d7a3113fbdd33e83f0d6c56818.nii.gz \ No newline at end of file diff --git a/sub-04/ses-004/func/sub-04_ses-004_task-s01e06a_bold.json b/sub-04/ses-004/func/sub-04_ses-004_task-s01e06a_bold.json new file mode 100644 index 00000000000..977758655ca --- /dev/null +++ b/sub-04/ses-004/func/sub-04_ses-004_task-s01e06a_bold.json @@ -0,0 +1,168 @@ +{ + "AcquisitionMatrixPE": 104, + "AcquisitionNumber": 1, + "AcquisitionTime": "10:42:50.652500", + "BandwidthPerPixelPhaseEncode": 17.17, + "BaseResolution": 104, + "BodyPartExamined": "BRAIN", + "CoilString": "HC1-7;NC1_2", + "ConsistencyInfo": "N4_VE11C_LATEST_20160120", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", + "DerivedVendorReportedEchoSpacing": 0.000560011, + "DeviceSerialNumber": "167006", + "DwellTime": 2.1e-06, + "EchoTime": 0.037, + "EchoTrainLength": 104, + "EffectiveEchoSpacing": 0.000560011, + "FlipAngle": 52, + "ImageComments": "Unaliased_MB4_PE3_LB", + "ImageOrientationPatientDICOM": [0.996846, 0.0173463, -0.0774415, -0.0348106, 0.972507, -0.230256], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagingFrequency": 123.259, + "InPlanePhaseEncodingDirectionDICOM": "COL", + "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", + "InstitutionName": "IUGM", + "InstitutionalDepartmentName": "Department", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma_fit", + "Modality": "MR", + "MultibandAccelerationFactor": 4, + "PartialFourier": 1, + "PatientPosition": "HFS", + "PercentPhaseFOV": 100, + "PhaseEncodingDirection": "j", + "PhaseEncodingSteps": 104, + "PhaseResolution": 1, + "PixelBandwidth": 2290, + "ProcedureStepDescription": "video_friends", + "ProtocolName": "func_task-s01e05a", + "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", + "ReceiveCoilActiveElements": "HC1-7;NC1,2", + "ReceiveCoilName": "HeadNeck_64", + "ReconMatrixPE": 104, + "RepetitionTime": 1.49, + "SAR": 0.0337331, + "ScanOptions": "FS", + "ScanningSequence": "EP", + "SequenceName": "epfid2d1_104", + "SequenceVariant": "SK_SS", + "SeriesDescription": "func_task-s01e05a", + "SeriesNumber": 13, + "ShimSetting": [597, -7253, -8839, 558, -49, -264, 7, 58], + "SliceThickness": 2, + "SliceTiming": [0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685], + "SoftwareVersions": "syngo_MR_E11", + "SpacingBetweenSlices": 2, + "StationName": "MRC35049", + "TaskName": "friends", + "TotalReadoutTime": 0.0576811, + "TxRefAmp": 220.08, + "WipMemBlock": "c8d37070-e52e-4b3e-9d42-c27d838d5a99||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "dcmmeta_affine": [ + [-1.9936919212341309, -0.069621242582798, -0.1426365226507187, 105.87299346923828], + [-0.0346926674246788, 1.9450143575668335, -0.4644520580768585, -80.86349487304688], + [-0.15488290786743164, 0.4605129361152649, 1.9400874376296997, -48.75729751586914], + [0.0, 0.0, 0.0, 1.0] +], + "dcmmeta_reorient_transform": [ + [0.0, -1.0, 0.0, 103.0], + [1.0, 0.0, 0.0, 0.0], + [0.0, 0.0, 1.0, 0.0], + [0.0, 0.0, 0.0, 1.0] +], + "dcmmeta_shape": [104, 104, 60, 488], + "dcmmeta_slice_dim": 2, + "dcmmeta_version": 0.6, + "global": { + "const": { + "AcquisitionMatrix": [104, 0, 0, 104], + "AngioFlag": "N", + "BitsAllocated": 16, + "BitsStored": 16, + "BodyPartExamined": "BRAIN", + "Columns": 832, + "EchoNumbers": 1, + "EchoTime": 37.0, + "EchoTrainLength": 104, + "FlipAngle": 52.0, + "HighBit": 15, + "ImageOrientationPatient": [0.99684598930748, 0.01734633404694, -0.0774414507659, -0.0348106221913, 0.97250716137125, -0.2302564693213], + "ImagePositionPatient": [-799.06375085822, -840.08632359626, 222.6796191585], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagedNucleus": "1H", + "ImagingFrequency": 123.25914, + "InPlanePhaseEncodingDirection": "COL", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3.0, + "Manufacturer": "SIEMENS", + "ManufacturerModelName": "Prisma_fit", + "Modality": "MR", + "NumberOfAverages": 1.0, + "NumberOfPhaseEncodingSteps": 104, + "PercentPhaseFieldOfView": 100.0, + "PercentSampling": 100.0, + "PerformedProcedureStepStartTime": "100210.226000", + "PhotometricInterpretation": "MONOCHROME2", + "PixelBandwidth": 2290.0, + "PixelRepresentation": 0, + "PixelSpacing": [2.0, 2.0], + "ProtocolName": "func_task-s01e05a", + "RepetitionTime": 1490.0, + "Rows": 832, + "SAR": 0.0337330932512, + "SamplesPerPixel": 1, + "ScanOptions": "FS", + "ScanningSequence": "EP", + "SequenceName": "epfid2d1_104", + "SequenceVariant": [ + "SK", + "SS" +], + "SeriesDescription": "func_task-s01e05a", + "SeriesNumber": 13, + "SeriesTime": "104416.830000", + "SliceLocation": -36.068780439971, + "SliceThickness": 2.0, + "SmallestImagePixelValue": 0, + "SoftwareVersions": "syngo MR E11", + "SpacingBetweenSlices": 2.0000000071786, + "SpecificCharacterSet": "ISO_IR 100", + "StudyID": "1", + "StudyTime": 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+ } +} \ No newline at end of file diff --git a/sub-04/ses-004/func/sub-04_ses-004_task-s01e06a_bold.nii.gz b/sub-04/ses-004/func/sub-04_ses-004_task-s01e06a_bold.nii.gz new file mode 120000 index 00000000000..2028e14cfb1 --- /dev/null +++ b/sub-04/ses-004/func/sub-04_ses-004_task-s01e06a_bold.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/0M/13/SHA256E-s515251377--c10567042f57514a41e6a29514088b442cadc5a96b2164207c757b5bdafdceec.nii.gz/SHA256E-s515251377--c10567042f57514a41e6a29514088b442cadc5a96b2164207c757b5bdafdceec.nii.gz \ No newline at end of file diff --git a/sub-04/ses-004/func/sub-04_ses-004_task-s01e04b_sbref.json b/sub-04/ses-004/func/sub-04_ses-004_task-s01e06a_sbref.json similarity index 80% rename from sub-04/ses-004/func/sub-04_ses-004_task-s01e04b_sbref.json rename to sub-04/ses-004/func/sub-04_ses-004_task-s01e06a_sbref.json index aa5a35b6645..99590f7ceed 100644 --- a/sub-04/ses-004/func/sub-04_ses-004_task-s01e04b_sbref.json +++ b/sub-04/ses-004/func/sub-04_ses-004_task-s01e06a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "10:30:20.275000", + "AcquisitionTime": "10:42:40.222500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e04b", + "ProtocolName": "func_task-s01e05a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0337273, + "SAR": 0.0337331, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e04b_SBRef", - "SeriesNumber": 10, + "SeriesDescription": "func_task-s01e05a_SBRef", + "SeriesNumber": 12, "ShimSetting": [597, -7253, -8839, 558, -49, -264, 7, 58], "SliceThickness": 2, - "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.08, 1.1775, 1.275, 1.3725, 1.47, 1.57, 1.6675, 1.765, 1.8625, 1.96, 2.06, 2.1575, 2.255, 2.3525, 2.45, 2.55, 2.6475, 2.745, 2.8425, 2.94, 3.04, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825], + "SliceTiming": [0, 0.0975, 0.195, 0.295, 0.3925, 0.49, 0.5875, 0.685, 0.785, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.3125, 4.41, 4.5075, 4.605, 4.7025, 4.8025, 4.9, 4.9975, 5.095, 5.1925, 5.2925, 5.39, 5.4875, 5.585, 5.6825, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 220.08, - "WipMemBlock": "1ff70d5d-efae-445e-9787-3fbae5bcfe97||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "c8d37070-e52e-4b3e-9d42-c27d838d5a99||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9936919212341309, -0.069621242582798, -0.1426365226507187, 105.87299346923828], [-0.0346926674246788, 1.9450143575668335, -0.4644520580768585, -80.86349487304688], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "103020.275000", + "AcquisitionTime": "104240.222500", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "103146.034000", + "ContentTime": "104416.792000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259134, + "ImagingFrequency": 123.25914, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "103146.034000", + "InstanceCreationTime": "104416.792000", "InstanceNumber": 1, - "LargestImagePixelValue": 63139, + "LargestImagePixelValue": 65535, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e04b", + "ProtocolName": "func_task-s01e05a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.033727254714, + "SAR": 0.0337330932512, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e04b_SBRef", - "SeriesNumber": 10, - "SeriesTime": "103146.030000", + "SeriesDescription": "func_task-s01e05a_SBRef", + "SeriesNumber": 12, + "SeriesTime": "104416.789000", "SliceLocation": -36.068780439971, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "100210.056000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 11799.0, + "WindowCenter": 11876.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 25214.0, + "WindowWidth": 25414.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-04/ses-004/func/sub-04_ses-004_task-s01e06a_sbref.nii.gz b/sub-04/ses-004/func/sub-04_ses-004_task-s01e06a_sbref.nii.gz new file mode 120000 index 00000000000..1bd80817d55 --- /dev/null +++ b/sub-04/ses-004/func/sub-04_ses-004_task-s01e06a_sbref.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/14/P6/SHA256E-s1093418--4b0e13556ca6d4df04a82878ca3a2aea26536f6b81085829a8c4d058e75ced77.nii.gz/SHA256E-s1093418--4b0e13556ca6d4df04a82878ca3a2aea26536f6b81085829a8c4d058e75ced77.nii.gz \ No newline at end of file diff --git a/sub-04/ses-004/func/sub-04_ses-004_task-s01e06b_bold.json b/sub-04/ses-004/func/sub-04_ses-004_task-s01e06b_bold.json new file mode 100644 index 00000000000..ab3b4d5273a --- /dev/null +++ b/sub-04/ses-004/func/sub-04_ses-004_task-s01e06b_bold.json @@ -0,0 +1,168 @@ +{ + "AcquisitionMatrixPE": 104, + "AcquisitionNumber": 1, + "AcquisitionTime": "10:57:47.402500", + "BandwidthPerPixelPhaseEncode": 17.17, + "BaseResolution": 104, + "BodyPartExamined": "BRAIN", + "CoilString": "HC1-7;NC1_2", + "ConsistencyInfo": "N4_VE11C_LATEST_20160120", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", + "DerivedVendorReportedEchoSpacing": 0.000560011, + "DeviceSerialNumber": "167006", + "DwellTime": 2.1e-06, + "EchoTime": 0.037, + "EchoTrainLength": 104, + "EffectiveEchoSpacing": 0.000560011, + "FlipAngle": 52, + "ImageComments": "Unaliased_MB4_PE3_LB", + "ImageOrientationPatientDICOM": [0.996846, 0.0173463, -0.0774415, -0.0348106, 0.972507, -0.230256], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + 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index 79% rename from sub-04/ses-004/func/sub-04_ses-004_task-s01e04a_sbref.json rename to sub-04/ses-004/func/sub-04_ses-004_task-s01e06b_sbref.json index 12d08a2581c..424e6ff216c 100644 --- a/sub-04/ses-004/func/sub-04_ses-004_task-s01e04a_sbref.json +++ b/sub-04/ses-004/func/sub-04_ses-004_task-s01e06b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "10:18:17.757500", + "AcquisitionTime": "10:57:36.972500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e04a", + "ProtocolName": "func_task-s01e05b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0337273, + "SAR": 0.0337331, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e04a_SBRef", - "SeriesNumber": 8, + "SeriesDescription": "func_task-s01e05b_SBRef", + "SeriesNumber": 14, "ShimSetting": [597, -7253, -8839, 558, -49, -264, 7, 58], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.3925, 0.49, 0.5875, 0.685, 0.7825, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.31, 4.41, 4.5075, 4.605, 4.7025, 4.8, 4.9, 4.9975, 5.095, 5.1925, 5.29, 5.39, 5.4875, 5.585, 5.6825, 5.78], + "SliceTiming": [0, 0.0975, 0.1975, 0.295, 0.3925, 0.49, 0.5875, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.095, 5.195, 5.2925, 5.39, 5.4875, 5.585, 5.685, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 220.08, - "WipMemBlock": "636e48e8-9374-41a0-ba9f-6f31becfaad4||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "5614e2fb-a431-42fb-b910-70559f21a215||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9936919212341309, -0.069621242582798, -0.1426365226507187, 105.87299346923828], [-0.0346926674246788, 1.9450143575668335, -0.4644520580768585, -80.86349487304688], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "101817.757500", + "AcquisitionTime": "105736.972500", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "101946.154000", + "ContentTime": "105846.155000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259124, + "ImagingFrequency": 123.259143, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "101946.154000", + "InstanceCreationTime": "105846.155000", "InstanceNumber": 1, - "LargestImagePixelValue": 59542, + "LargestImagePixelValue": 65535, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e04a", + "ProtocolName": "func_task-s01e05b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.033727254714, + "SAR": 0.0337330932512, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e04a_SBRef", - "SeriesNumber": 8, - "SeriesTime": "101946.151000", + "SeriesDescription": "func_task-s01e05b_SBRef", + "SeriesNumber": 14, + "SeriesTime": "105846.152000", "SliceLocation": -36.068780439971, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "100210.056000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 11766.0, + "WindowCenter": 11818.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 25137.0, + "WindowWidth": 25260.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-04/ses-004/func/sub-04_ses-004_task-s01e06b_sbref.nii.gz b/sub-04/ses-004/func/sub-04_ses-004_task-s01e06b_sbref.nii.gz new file mode 120000 index 00000000000..249ab5a0580 --- /dev/null +++ b/sub-04/ses-004/func/sub-04_ses-004_task-s01e06b_sbref.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/Jz/zG/SHA256E-s1093084--9f9e69ecc2491adc47611540e2003772ed12cf7ae75db865ef18f0675c5cb4fd.nii.gz/SHA256E-s1093084--9f9e69ecc2491adc47611540e2003772ed12cf7ae75db865ef18f0675c5cb4fd.nii.gz \ No newline at end of file diff --git a/sub-05/ses-001/func/sub-05_ses-001_task-s01e06a_bold.json b/sub-05/ses-001/func/sub-05_ses-001_task-s01e02a_bold.json similarity index 100% rename from sub-05/ses-001/func/sub-05_ses-001_task-s01e06a_bold.json rename to sub-05/ses-001/func/sub-05_ses-001_task-s01e02a_bold.json diff --git a/sub-05/ses-001/func/sub-05_ses-001_task-s01e06a_bold.nii.gz b/sub-05/ses-001/func/sub-05_ses-001_task-s01e02a_bold.nii.gz similarity index 100% rename from sub-05/ses-001/func/sub-05_ses-001_task-s01e06a_bold.nii.gz rename to sub-05/ses-001/func/sub-05_ses-001_task-s01e02a_bold.nii.gz diff --git a/sub-05/ses-001/func/sub-05_ses-001_task-s01e06a_bold__dup-01.json b/sub-05/ses-001/func/sub-05_ses-001_task-s01e02a_bold__dup-01.json similarity index 100% rename from sub-05/ses-001/func/sub-05_ses-001_task-s01e06a_bold__dup-01.json rename to sub-05/ses-001/func/sub-05_ses-001_task-s01e02a_bold__dup-01.json diff --git a/sub-05/ses-001/func/sub-05_ses-001_task-s01e06a_bold__dup-01.nii.gz b/sub-05/ses-001/func/sub-05_ses-001_task-s01e02a_bold__dup-01.nii.gz similarity index 100% rename from sub-05/ses-001/func/sub-05_ses-001_task-s01e06a_bold__dup-01.nii.gz rename to sub-05/ses-001/func/sub-05_ses-001_task-s01e02a_bold__dup-01.nii.gz diff --git a/sub-05/ses-001/func/sub-05_ses-001_task-s01e06a_sbref.json b/sub-05/ses-001/func/sub-05_ses-001_task-s01e02a_sbref.json similarity index 100% rename from sub-05/ses-001/func/sub-05_ses-001_task-s01e06a_sbref.json rename to sub-05/ses-001/func/sub-05_ses-001_task-s01e02a_sbref.json diff --git a/sub-05/ses-001/func/sub-05_ses-001_task-s01e06a_sbref.nii.gz b/sub-05/ses-001/func/sub-05_ses-001_task-s01e02a_sbref.nii.gz similarity index 100% rename from sub-05/ses-001/func/sub-05_ses-001_task-s01e06a_sbref.nii.gz rename to sub-05/ses-001/func/sub-05_ses-001_task-s01e02a_sbref.nii.gz diff --git a/sub-05/ses-001/func/sub-05_ses-001_task-s01e06a_sbref__dup-01.json b/sub-05/ses-001/func/sub-05_ses-001_task-s01e02a_sbref__dup-01.json similarity index 100% rename from sub-05/ses-001/func/sub-05_ses-001_task-s01e06a_sbref__dup-01.json rename to sub-05/ses-001/func/sub-05_ses-001_task-s01e02a_sbref__dup-01.json diff --git a/sub-05/ses-001/func/sub-05_ses-001_task-s01e06a_sbref__dup-01.nii.gz b/sub-05/ses-001/func/sub-05_ses-001_task-s01e02a_sbref__dup-01.nii.gz similarity index 100% rename from sub-05/ses-001/func/sub-05_ses-001_task-s01e06a_sbref__dup-01.nii.gz rename to sub-05/ses-001/func/sub-05_ses-001_task-s01e02a_sbref__dup-01.nii.gz diff --git a/sub-05/ses-001/func/sub-05_ses-001_task-s01e06b_bold.json b/sub-05/ses-001/func/sub-05_ses-001_task-s01e02b_bold.json similarity index 100% rename from sub-05/ses-001/func/sub-05_ses-001_task-s01e06b_bold.json rename to sub-05/ses-001/func/sub-05_ses-001_task-s01e02b_bold.json diff --git a/sub-05/ses-001/func/sub-05_ses-001_task-s01e06b_bold.nii.gz b/sub-05/ses-001/func/sub-05_ses-001_task-s01e02b_bold.nii.gz similarity index 100% rename from sub-05/ses-001/func/sub-05_ses-001_task-s01e06b_bold.nii.gz rename to sub-05/ses-001/func/sub-05_ses-001_task-s01e02b_bold.nii.gz diff --git a/sub-05/ses-001/func/sub-05_ses-001_task-s01e06b_sbref.json b/sub-05/ses-001/func/sub-05_ses-001_task-s01e02b_sbref.json similarity index 100% rename from sub-05/ses-001/func/sub-05_ses-001_task-s01e06b_sbref.json rename to sub-05/ses-001/func/sub-05_ses-001_task-s01e02b_sbref.json diff --git a/sub-05/ses-001/func/sub-05_ses-001_task-s01e06b_sbref.nii.gz b/sub-05/ses-001/func/sub-05_ses-001_task-s01e02b_sbref.nii.gz similarity index 100% rename from sub-05/ses-001/func/sub-05_ses-001_task-s01e06b_sbref.nii.gz rename to sub-05/ses-001/func/sub-05_ses-001_task-s01e02b_sbref.nii.gz diff --git a/sub-05/ses-002/func/sub-05_ses-002_task-s01e04a_bold.json b/sub-05/ses-002/func/sub-05_ses-002_task-s01e04a_bold.json deleted file mode 100644 index 369ef31dff8..00000000000 --- a/sub-05/ses-002/func/sub-05_ses-002_task-s01e04a_bold.json +++ /dev/null @@ -1,168 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "18:00:6.265000", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": "167006", - "DwellTime": 2.1e-06, - "EchoTime": 0.037, - "EchoTrainLength": 104, - "EffectiveEchoSpacing": 0.000560011, - "FlipAngle": 52, - "ImageComments": "Unaliased_MB4_PE3_LB", - "ImageOrientationPatientDICOM": [0.99828, -0.0491619, -0.031934, 0.0318954, 0.912533, -0.407758], - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "MB", - "ND", - "MOSAIC" -], - "ImagingFrequency": 123.259, - "InPlanePhaseEncodingDirectionDICOM": "COL", - "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", - "InstitutionName": "IUGM", - "InstitutionalDepartmentName": "Department", - "MRAcquisitionType": "2D", - "MagneticFieldStrength": 3, - "Manufacturer": "Siemens", - "ManufacturersModelName": "Prisma_fit", - "Modality": "MR", - "MultibandAccelerationFactor": 4, - "PartialFourier": 1, - "PatientPosition": "HFS", - "PercentPhaseFOV": 100, - "PhaseEncodingDirection": "j", - "PhaseEncodingSteps": 104, - "PhaseResolution": 1, - "PixelBandwidth": 2290, - "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e04a", - "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", - "ReceiveCoilActiveElements": "HC1-7;NC1,2", - "ReceiveCoilName": "HeadNeck_64", - "ReconMatrixPE": 104, - "RepetitionTime": 1.49, - "SAR": 0.0361332, - "ScanOptions": "FS", - "ScanningSequence": "EP", - "SequenceName": "epfid2d1_104", - "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e04a", - "SeriesNumber": 9, - "ShimSetting": [615, -7259, -8848, 411, 50, -410, -8, 44], - "SliceThickness": 2, - "SliceTiming": [0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685], - "SoftwareVersions": "syngo_MR_E11", - "SpacingBetweenSlices": 2, - "StationName": "MRC35049", - "TaskName": "friends", - "TotalReadoutTime": 0.0576811, - "TxRefAmp": 237.322, - "WipMemBlock": "f1ac0556-f2a1-4002-a991-cb7b087ca2d6||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", - "dcmmeta_affine": [ - [-1.9965603351593018, 0.06379079073667526, -0.0983738899230957, 98.36591339111328], - [0.09832380712032318, 1.8250659704208374, -0.8120754361152649, -72.7469253540039], - [-0.063867948949337, 0.8155150413513184, 1.8250633478164673, -72.46204376220703], - [0.0, 0.0, 0.0, 1.0] -], - "dcmmeta_reorient_transform": [ - [0.0, -1.0, 0.0, 103.0], - [1.0, 0.0, 0.0, 0.0], - [0.0, 0.0, 1.0, 0.0], - [0.0, 0.0, 0.0, 1.0] -], - "dcmmeta_shape": [104, 104, 60, 468], - "dcmmeta_slice_dim": 2, - "dcmmeta_version": 0.6, - "global": { - "const": { - "AcquisitionMatrix": [104, 0, 0, 104], - "AngioFlag": "N", - "BitsAllocated": 16, - "BitsStored": 16, - "BodyPartExamined": "BRAIN", - "Columns": 832, - "EchoNumbers": 1, - "EchoTime": 37.0, - "EchoTrainLength": 104, - "FlipAngle": 52.0, - "HighBit": 15, - "ImageOrientationPatient": [0.99828018540691, -0.0491619023461, -0.0319339753502, 0.03189539369212, 0.91253300317642, -0.40775752841], - "ImagePositionPatient": [-854.90418705026, -743.76903270055, 331.63142515321], - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "MB", - "ND", - "MOSAIC" -], - "ImagedNucleus": "1H", - "ImagingFrequency": 123.259161, - "InPlanePhaseEncodingDirection": "COL", - "MRAcquisitionType": "2D", - "MagneticFieldStrength": 3.0, - "Manufacturer": "SIEMENS", - "ManufacturerModelName": "Prisma_fit", - "Modality": "MR", - "NumberOfAverages": 1.0, - "NumberOfPhaseEncodingSteps": 104, - "PercentPhaseFieldOfView": 100.0, - "PercentSampling": 100.0, - "PerformedProcedureStepStartTime": "173550.574000", - "PhotometricInterpretation": "MONOCHROME2", - "PixelBandwidth": 2290.0, - "PixelRepresentation": 0, - "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e04a", - "RepetitionTime": 1490.0, - "Rows": 832, - "SAR": 0.03613319450428, - "SamplesPerPixel": 1, - "ScanOptions": "FS", - "ScanningSequence": "EP", - "SequenceName": "epfid2d1_104", - "SequenceVariant": [ - "SK", - "SS" -], - "SeriesDescription": "func_task-s01e04a", - "SeriesNumber": 9, - "SeriesTime": "180111.248000", - "SliceLocation": -41.424228035963, - "SliceThickness": 2.0, - "SmallestImagePixelValue": 0, - "SoftwareVersions": "syngo MR E11", - "SpacingBetweenSlices": 2.0000000449625, - "SpecificCharacterSet": "ISO_IR 100", - "StudyID": "1", - "StudyTime": "173550.501000", - "TransmitCoilName": "Body", - "VariableFlipAngleFlag": "N", - "WindowCenterWidthExplanation": "Algo1", - "dBdt": 0.0}, - "slices": {} - }, - "time": { - "samples": { - "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259, 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272, 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285, 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 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21756.0, 21735.0, 21718.0, 21692.0, 21683.0, 21711.0, 21748.0, 21742.0, 21747.0, 21732.0, 21770.0, 21800.0, 21774.0, 21742.0, 21717.0, 21733.0, 21758.0, 21760.0, 21703.0, 21645.0, 21602.0, 21618.0, 21657.0, 21726.0, 21716.0, 21705.0, 21661.0, 21632.0, 21689.0, 21726.0, 21676.0, 21578.0, 21532.0, 21501.0, 21515.0, 21484.0, 21454.0, 21441.0, 21499.0, 21504.0, 21522.0, 21604.0, 21641.0] - }, - "slices": {} - } -} \ No newline at end of file diff --git a/sub-05/ses-002/func/sub-05_ses-002_task-s01e04b_bold.nii.gz b/sub-05/ses-002/func/sub-05_ses-002_task-s01e04b_bold.nii.gz deleted file mode 120000 index f6f85dce783..00000000000 --- a/sub-05/ses-002/func/sub-05_ses-002_task-s01e04b_bold.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/5k/P1/SHA256E-s500132871--1ca6e7f1fba1215cc2b81a2830cea196c795def86de03d676d9ae458b90f92ff.nii.gz/SHA256E-s500132871--1ca6e7f1fba1215cc2b81a2830cea196c795def86de03d676d9ae458b90f92ff.nii.gz \ No newline at end of file diff --git a/sub-05/ses-002/func/sub-05_ses-002_task-s01e04b_sbref.nii.gz b/sub-05/ses-002/func/sub-05_ses-002_task-s01e04b_sbref.nii.gz deleted file mode 120000 index 391c18e1900..00000000000 --- a/sub-05/ses-002/func/sub-05_ses-002_task-s01e04b_sbref.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/ZM/Mk/SHA256E-s1101127--a6d7cd73c8280d9199e80a8f37f34c8d3942d08a7b7bbe5e3a12065a9d49e185.nii.gz/SHA256E-s1101127--a6d7cd73c8280d9199e80a8f37f34c8d3942d08a7b7bbe5e3a12065a9d49e185.nii.gz \ No newline at end of file diff --git a/sub-05/ses-002/func/sub-05_ses-002_task-s01e05a_bold.json b/sub-05/ses-002/func/sub-05_ses-002_task-s01e05a_bold.json index 6a5ce2edbfb..369ef31dff8 100644 --- a/sub-05/ses-002/func/sub-05_ses-002_task-s01e05a_bold.json +++ b/sub-05/ses-002/func/sub-05_ses-002_task-s01e05a_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "18:24:25.132500", + "AcquisitionTime": "18:00:6.265000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -45,29 +45,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e05a", + "ProtocolName": "func_task-s01e04a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0361394, + "SAR": 0.0361332, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e05a", - "SeriesNumber": 13, + "SeriesDescription": "func_task-s01e04a", + "SeriesNumber": 9, "ShimSetting": [615, -7259, -8848, 411, 50, -410, -8, 44], "SliceThickness": 2, - "SliceTiming": [0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 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"f1ac0556-f2a1-4002-a991-cb7b087ca2d6||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9965603351593018, 0.06379079073667526, -0.0983738899230957, 98.36591339111328], [0.09832380712032318, 1.8250659704208374, -0.8120754361152649, -72.7469253540039], @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 488], + "dcmmeta_shape": [104, 104, 60, 468], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.25918, + "ImagingFrequency": 123.259161, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e05a", + "ProtocolName": "func_task-s01e04a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03613944817421, + "SAR": 0.03613319450428, 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22170.0, 22163.0, 22150.0, 22104.0, 22098.0, 22097.0, 22120.0, 22143.0, 22131.0, 22123.0, 22075.0, 22053.0, 22062.0, 22072.0, 22095.0, 22093.0, 22090.0, 22099.0, 22096.0, 22073.0, 22033.0, 21999.0, 22003.0, 22086.0, 22152.0, 22177.0, 22141.0, 22104.0, 22097.0, 22101.0, 22098.0, 22056.0] }, "slices": {} } diff --git a/sub-05/ses-002/func/sub-05_ses-002_task-s01e05a_bold.nii.gz b/sub-05/ses-002/func/sub-05_ses-002_task-s01e05a_bold.nii.gz index 461e6e2527c..95156715bab 120000 --- a/sub-05/ses-002/func/sub-05_ses-002_task-s01e05a_bold.nii.gz +++ b/sub-05/ses-002/func/sub-05_ses-002_task-s01e05a_bold.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/zm/g0/SHA256E-s522085184--75b9c68eae9c9c4661e2065214d8321cb856394c70d08a8a22abd21e1d776899.nii.gz/SHA256E-s522085184--75b9c68eae9c9c4661e2065214d8321cb856394c70d08a8a22abd21e1d776899.nii.gz \ No newline at end of file +../../../.git/annex/objects/6w/2M/SHA256E-s500424433--959cd2729476e584ee93a1a83ce3a421f815f614e979b5abcff40144efb05055.nii.gz/SHA256E-s500424433--959cd2729476e584ee93a1a83ce3a421f815f614e979b5abcff40144efb05055.nii.gz \ No newline at end of file diff --git a/sub-05/ses-002/func/sub-05_ses-002_task-s01e05a_sbref.json b/sub-05/ses-002/func/sub-05_ses-002_task-s01e05a_sbref.json index ff07a5ab0d4..775e01be49d 100644 --- a/sub-05/ses-002/func/sub-05_ses-002_task-s01e05a_sbref.json +++ b/sub-05/ses-002/func/sub-05_ses-002_task-s01e05a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "18:24:14.702500", + "AcquisitionTime": "17:59:55.835000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e05a", + "ProtocolName": "func_task-s01e04a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0361394, + "SAR": 0.0361332, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e05a_SBRef", - "SeriesNumber": 12, + "SeriesDescription": "func_task-s01e04a_SBRef", + "SeriesNumber": 8, "ShimSetting": [615, -7259, -8848, 411, 50, -410, -8, 44], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.3925, 0.49, 0.5875, 0.685, 0.7825, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.82, 3.92, 4.0175, 4.115, 4.2125, 4.31, 4.41, 4.5075, 4.605, 4.7025, 4.8, 4.9, 4.9975, 5.095, 5.1925, 5.29, 5.39, 5.4875, 5.585, 5.6825, 5.78], + "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.45, 2.5475, 2.645, 2.7425, 2.84, 2.94, 3.0375, 3.135, 3.2325, 3.33, 3.43, 3.5275, 3.625, 3.7225, 3.82, 3.9175, 4.0175, 4.115, 4.2125, 4.31, 4.4075, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 237.322, - "WipMemBlock": "c76412d4-5790-40f1-8686-49cef12daf2d||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "f1ac0556-f2a1-4002-a991-cb7b087ca2d6||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9965603351593018, 0.06379079073667526, -0.0983738899230957, 98.36591339111328], [0.09832380712032318, 1.8250659704208374, -0.8120754361152649, -72.7469253540039], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "182414.702500", + "AcquisitionTime": "175955.835000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "182551.556000", + "ContentTime": "180111.215000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,9 +107,9 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.25918, + "ImagingFrequency": 123.259161, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "182551.556000", + "InstanceCreationTime": "180111.215000", "InstanceNumber": 1, "LargestImagePixelValue": 65535, "MRAcquisitionType": "2D", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e05a", + "ProtocolName": "func_task-s01e04a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03613944817421, + "SAR": 0.03613319450428, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e05a_SBRef", - "SeriesNumber": 12, - "SeriesTime": "182551.552000", + "SeriesDescription": "func_task-s01e04a_SBRef", + "SeriesNumber": 8, + "SeriesTime": "180111.211000", "SliceLocation": -41.424228035963, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "173550.501000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12315.0, + "WindowCenter": 12635.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 26740.0, + "WindowWidth": 27694.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-05/ses-002/func/sub-05_ses-002_task-s01e05a_sbref.nii.gz b/sub-05/ses-002/func/sub-05_ses-002_task-s01e05a_sbref.nii.gz index baa6a6368f8..e5a239d0dad 120000 --- a/sub-05/ses-002/func/sub-05_ses-002_task-s01e05a_sbref.nii.gz +++ b/sub-05/ses-002/func/sub-05_ses-002_task-s01e05a_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/45/8m/SHA256E-s1101734--e049c2692609c181e4ebbb6cd7d868ffe1b62fbd56151434a1f594d0bb96d35b.nii.gz/SHA256E-s1101734--e049c2692609c181e4ebbb6cd7d868ffe1b62fbd56151434a1f594d0bb96d35b.nii.gz \ No newline at end of file +../../../.git/annex/objects/Ww/zk/SHA256E-s1101928--3d488036dde00aadc662239cb6b602ffd1d152c855d5fa9f1eaa3ba51130e5f8.nii.gz/SHA256E-s1101928--3d488036dde00aadc662239cb6b602ffd1d152c855d5fa9f1eaa3ba51130e5f8.nii.gz \ No newline at end of file diff --git a/sub-05/ses-002/func/sub-05_ses-002_task-s01e05b_bold.json b/sub-05/ses-002/func/sub-05_ses-002_task-s01e05b_bold.json index 55017bdcf34..0303e793360 100644 --- a/sub-05/ses-002/func/sub-05_ses-002_task-s01e05b_bold.json +++ b/sub-05/ses-002/func/sub-05_ses-002_task-s01e05b_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "18:37:1.380000", + "AcquisitionTime": "18:12:18.157500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -45,29 +45,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e05b", + "ProtocolName": "func_task-s01e04b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0361394, + "SAR": 0.0361332, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e05b", - "SeriesNumber": 15, + "SeriesDescription": "func_task-s01e04b", + "SeriesNumber": 11, "ShimSetting": [615, -7259, -8848, 411, 50, -410, -8, 44], "SliceThickness": 2, - "SliceTiming": [0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685], + "SliceTiming": [0, 0.7825, 0.0975, 0.88, 0.195, 0.9775, 0.2925, 1.0775, 0.39, 1.175, 0.4875, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.9775, 0.2925, 1.0775, 0.39, 1.175, 0.4875, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.9775, 0.2925, 1.0775, 0.39, 1.175, 0.4875, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.9775, 0.2925, 1.0775, 0.39, 1.175, 0.4875, 1.2725, 0.5875, 1.37, 0.685], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 237.322, - "WipMemBlock": "6723a400-04a9-4403-833f-b41928479db4||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "b481cebb-5661-4582-95f7-d18f66d506bd||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9965603351593018, 0.06379079073667526, -0.0983738899230957, 98.36591339111328], [0.09832380712032318, 1.8250659704208374, -0.8120754361152649, -72.7469253540039], @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 488], + "dcmmeta_shape": [104, 104, 60, 468], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259188, + "ImagingFrequency": 123.259173, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e05b", + "ProtocolName": "func_task-s01e04b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03613944817421, + "SAR": 0.03613319450428, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,9 +135,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e05b", - "SeriesNumber": 15, - "SeriesTime": "183831.240000", + "SeriesDescription": "func_task-s01e04b", + "SeriesNumber": 11, + "SeriesTime": "181333.920000", "SliceLocation": -41.424228035963, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -154,14 +154,14 @@ }, "time": { "samples": { - "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 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21732.0, 21770.0, 21800.0, 21774.0, 21742.0, 21717.0, 21733.0, 21758.0, 21760.0, 21703.0, 21645.0, 21602.0, 21618.0, 21657.0, 21726.0, 21716.0, 21705.0, 21661.0, 21632.0, 21689.0, 21726.0, 21676.0, 21578.0, 21532.0, 21501.0, 21515.0, 21484.0, 21454.0, 21441.0, 21499.0, 21504.0, 21522.0, 21604.0, 21641.0] }, "slices": {} } diff --git a/sub-05/ses-002/func/sub-05_ses-002_task-s01e05b_bold.nii.gz b/sub-05/ses-002/func/sub-05_ses-002_task-s01e05b_bold.nii.gz index c13d35b81ea..f6f85dce783 120000 --- a/sub-05/ses-002/func/sub-05_ses-002_task-s01e05b_bold.nii.gz +++ b/sub-05/ses-002/func/sub-05_ses-002_task-s01e05b_bold.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/XM/qP/SHA256E-s521700973--d08123d6752ec1424723c049de8ea9c5fa6aa0ed57f28c902aad762a7f0dca71.nii.gz/SHA256E-s521700973--d08123d6752ec1424723c049de8ea9c5fa6aa0ed57f28c902aad762a7f0dca71.nii.gz \ No newline at end of file +../../../.git/annex/objects/5k/P1/SHA256E-s500132871--1ca6e7f1fba1215cc2b81a2830cea196c795def86de03d676d9ae458b90f92ff.nii.gz/SHA256E-s500132871--1ca6e7f1fba1215cc2b81a2830cea196c795def86de03d676d9ae458b90f92ff.nii.gz \ No newline at end of file diff --git a/sub-05/ses-002/func/sub-05_ses-002_task-s01e05b_sbref.json b/sub-05/ses-002/func/sub-05_ses-002_task-s01e05b_sbref.json index 0a05eae255e..dfd4437b478 100644 --- a/sub-05/ses-002/func/sub-05_ses-002_task-s01e05b_sbref.json +++ b/sub-05/ses-002/func/sub-05_ses-002_task-s01e05b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "18:36:50.950000", + "AcquisitionTime": "18:12:7.727500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e05b", + "ProtocolName": "func_task-s01e04b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0361394, + "SAR": 0.0361332, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e05b_SBRef", - "SeriesNumber": 14, + "SeriesDescription": "func_task-s01e04b_SBRef", + "SeriesNumber": 10, "ShimSetting": [615, -7259, -8848, 411, 50, -410, -8, 44], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.3925, 0.49, 0.5875, 0.685, 0.7825, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.45, 2.5475, 2.645, 2.7425, 2.84, 2.94, 3.0375, 3.135, 3.2325, 3.33, 3.43, 3.5275, 3.625, 3.7225, 3.82, 3.92, 4.0175, 4.115, 4.2125, 4.31, 4.41, 4.5075, 4.605, 4.7025, 4.8, 4.9, 4.9975, 5.095, 5.1925, 5.29, 5.39, 5.4875, 5.585, 5.6825, 5.78], + "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.4875, 0.5875, 0.685, 0.7825, 0.88, 0.9775, 1.0775, 1.175, 1.2725, 1.37, 1.4675, 1.5675, 1.665, 1.7625, 1.86, 1.9575, 2.0575, 2.155, 2.2525, 2.35, 2.4475, 2.5475, 2.645, 2.7425, 2.84, 2.9375, 3.0375, 3.135, 3.2325, 3.33, 3.4275, 3.5275, 3.625, 3.7225, 3.82, 3.9175, 4.0175, 4.115, 4.2125, 4.31, 4.4075, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.995, 5.095, 5.1925, 5.29, 5.3875, 5.485, 5.585, 5.6825, 5.78], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 237.322, - "WipMemBlock": "6723a400-04a9-4403-833f-b41928479db4||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "b481cebb-5661-4582-95f7-d18f66d506bd||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9965603351593018, 0.06379079073667526, -0.0983738899230957, 98.36591339111328], [0.09832380712032318, 1.8250659704208374, -0.8120754361152649, -72.7469253540039], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "183650.950000", + "AcquisitionTime": "181207.727500", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "183831.215000", + "ContentTime": "181333.890000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,9 +107,9 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259188, + "ImagingFrequency": 123.259173, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "183831.215000", + "InstanceCreationTime": "181333.890000", "InstanceNumber": 1, "LargestImagePixelValue": 65535, "MRAcquisitionType": "2D", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e05b", + "ProtocolName": "func_task-s01e04b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03613944817421, + "SAR": 0.03613319450428, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e05b_SBRef", - "SeriesNumber": 14, - "SeriesTime": "183831.211000", + "SeriesDescription": "func_task-s01e04b_SBRef", + "SeriesNumber": 10, + "SeriesTime": "181333.887000", "SliceLocation": -41.424228035963, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "173550.501000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12386.0, + "WindowCenter": 12485.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 26938.0, + "WindowWidth": 27240.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-05/ses-002/func/sub-05_ses-002_task-s01e05b_sbref.nii.gz b/sub-05/ses-002/func/sub-05_ses-002_task-s01e05b_sbref.nii.gz index c5a06f23d34..391c18e1900 120000 --- a/sub-05/ses-002/func/sub-05_ses-002_task-s01e05b_sbref.nii.gz +++ b/sub-05/ses-002/func/sub-05_ses-002_task-s01e05b_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/Fg/1Q/SHA256E-s1101210--9a19728bec67917d911975e95cc0350429607b2ef1c04845c8dfb16f24dde449.nii.gz/SHA256E-s1101210--9a19728bec67917d911975e95cc0350429607b2ef1c04845c8dfb16f24dde449.nii.gz \ No newline at end of file +../../../.git/annex/objects/ZM/Mk/SHA256E-s1101127--a6d7cd73c8280d9199e80a8f37f34c8d3942d08a7b7bbe5e3a12065a9d49e185.nii.gz/SHA256E-s1101127--a6d7cd73c8280d9199e80a8f37f34c8d3942d08a7b7bbe5e3a12065a9d49e185.nii.gz \ No newline at end of file diff --git a/sub-05/ses-002/func/sub-05_ses-002_task-s01e06a_bold.json b/sub-05/ses-002/func/sub-05_ses-002_task-s01e06a_bold.json new file mode 100644 index 00000000000..6a5ce2edbfb --- /dev/null +++ b/sub-05/ses-002/func/sub-05_ses-002_task-s01e06a_bold.json @@ -0,0 +1,168 @@ +{ + "AcquisitionMatrixPE": 104, + "AcquisitionNumber": 1, + "AcquisitionTime": "18:24:25.132500", + "BandwidthPerPixelPhaseEncode": 17.17, + "BaseResolution": 104, + "BodyPartExamined": "BRAIN", + "CoilString": "HC1-7;NC1_2", + "ConsistencyInfo": "N4_VE11C_LATEST_20160120", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", + "DerivedVendorReportedEchoSpacing": 0.000560011, + "DeviceSerialNumber": "167006", + "DwellTime": 2.1e-06, + "EchoTime": 0.037, + "EchoTrainLength": 104, + "EffectiveEchoSpacing": 0.000560011, + "FlipAngle": 52, + "ImageComments": "Unaliased_MB4_PE3_LB", + "ImageOrientationPatientDICOM": [0.99828, -0.0491619, -0.031934, 0.0318954, 0.912533, -0.407758], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagingFrequency": 123.259, + "InPlanePhaseEncodingDirectionDICOM": "COL", + "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", + "InstitutionName": "IUGM", + "InstitutionalDepartmentName": "Department", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma_fit", + "Modality": "MR", + "MultibandAccelerationFactor": 4, + "PartialFourier": 1, + "PatientPosition": "HFS", + "PercentPhaseFOV": 100, + "PhaseEncodingDirection": "j", + "PhaseEncodingSteps": 104, + "PhaseResolution": 1, + "PixelBandwidth": 2290, + "ProcedureStepDescription": "video_friends", + "ProtocolName": "func_task-s01e05a", + "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", + "ReceiveCoilActiveElements": "HC1-7;NC1,2", + "ReceiveCoilName": "HeadNeck_64", + "ReconMatrixPE": 104, + "RepetitionTime": 1.49, + "SAR": 0.0361394, + "ScanOptions": "FS", + "ScanningSequence": "EP", + "SequenceName": "epfid2d1_104", + "SequenceVariant": "SK_SS", + "SeriesDescription": "func_task-s01e05a", + "SeriesNumber": 13, + "ShimSetting": [615, -7259, -8848, 411, 50, -410, -8, 44], + "SliceThickness": 2, + "SliceTiming": [0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685], + "SoftwareVersions": "syngo_MR_E11", + "SpacingBetweenSlices": 2, + "StationName": "MRC35049", + "TaskName": "friends", + "TotalReadoutTime": 0.0576811, + "TxRefAmp": 237.322, + "WipMemBlock": "c76412d4-5790-40f1-8686-49cef12daf2d||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "dcmmeta_affine": [ + [-1.9965603351593018, 0.06379079073667526, -0.0983738899230957, 98.36591339111328], + [0.09832380712032318, 1.8250659704208374, -0.8120754361152649, -72.7469253540039], + [-0.063867948949337, 0.8155150413513184, 1.8250633478164673, -72.46204376220703], + [0.0, 0.0, 0.0, 1.0] +], + "dcmmeta_reorient_transform": [ + [0.0, -1.0, 0.0, 103.0], + [1.0, 0.0, 0.0, 0.0], + [0.0, 0.0, 1.0, 0.0], + [0.0, 0.0, 0.0, 1.0] +], + "dcmmeta_shape": [104, 104, 60, 488], + "dcmmeta_slice_dim": 2, + "dcmmeta_version": 0.6, + "global": { + "const": { + "AcquisitionMatrix": [104, 0, 0, 104], + "AngioFlag": "N", + "BitsAllocated": 16, + "BitsStored": 16, + "BodyPartExamined": "BRAIN", + "Columns": 832, + "EchoNumbers": 1, + "EchoTime": 37.0, + "EchoTrainLength": 104, + "FlipAngle": 52.0, + "HighBit": 15, + "ImageOrientationPatient": [0.99828018540691, -0.0491619023461, -0.0319339753502, 0.03189539369212, 0.91253300317642, -0.40775752841], + "ImagePositionPatient": [-854.90418705026, -743.76903270055, 331.63142515321], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagedNucleus": "1H", + "ImagingFrequency": 123.25918, + "InPlanePhaseEncodingDirection": "COL", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3.0, + "Manufacturer": "SIEMENS", + "ManufacturerModelName": "Prisma_fit", + "Modality": "MR", + "NumberOfAverages": 1.0, + 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a/sub-05/ses-002/func/sub-05_ses-002_task-s01e04b_sbref.json b/sub-05/ses-002/func/sub-05_ses-002_task-s01e06a_sbref.json similarity index 80% rename from sub-05/ses-002/func/sub-05_ses-002_task-s01e04b_sbref.json rename to sub-05/ses-002/func/sub-05_ses-002_task-s01e06a_sbref.json index dfd4437b478..ff07a5ab0d4 100644 --- a/sub-05/ses-002/func/sub-05_ses-002_task-s01e04b_sbref.json +++ b/sub-05/ses-002/func/sub-05_ses-002_task-s01e06a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "18:12:7.727500", + "AcquisitionTime": "18:24:14.702500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e04b", + "ProtocolName": "func_task-s01e05a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0361332, + "SAR": 0.0361394, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e04b_SBRef", - "SeriesNumber": 10, + "SeriesDescription": "func_task-s01e05a_SBRef", + "SeriesNumber": 12, "ShimSetting": [615, -7259, -8848, 411, 50, -410, -8, 44], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.4875, 0.5875, 0.685, 0.7825, 0.88, 0.9775, 1.0775, 1.175, 1.2725, 1.37, 1.4675, 1.5675, 1.665, 1.7625, 1.86, 1.9575, 2.0575, 2.155, 2.2525, 2.35, 2.4475, 2.5475, 2.645, 2.7425, 2.84, 2.9375, 3.0375, 3.135, 3.2325, 3.33, 3.4275, 3.5275, 3.625, 3.7225, 3.82, 3.9175, 4.0175, 4.115, 4.2125, 4.31, 4.4075, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.995, 5.095, 5.1925, 5.29, 5.3875, 5.485, 5.585, 5.6825, 5.78], + "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.3925, 0.49, 0.5875, 0.685, 0.7825, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.82, 3.92, 4.0175, 4.115, 4.2125, 4.31, 4.41, 4.5075, 4.605, 4.7025, 4.8, 4.9, 4.9975, 5.095, 5.1925, 5.29, 5.39, 5.4875, 5.585, 5.6825, 5.78], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 237.322, - "WipMemBlock": "b481cebb-5661-4582-95f7-d18f66d506bd||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "c76412d4-5790-40f1-8686-49cef12daf2d||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9965603351593018, 0.06379079073667526, -0.0983738899230957, 98.36591339111328], [0.09832380712032318, 1.8250659704208374, -0.8120754361152649, -72.7469253540039], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "181207.727500", + "AcquisitionTime": "182414.702500", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "181333.890000", + "ContentTime": "182551.556000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,9 +107,9 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259173, + "ImagingFrequency": 123.25918, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "181333.890000", + "InstanceCreationTime": "182551.556000", "InstanceNumber": 1, "LargestImagePixelValue": 65535, "MRAcquisitionType": "2D", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e04b", + "ProtocolName": "func_task-s01e05a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03613319450428, + "SAR": 0.03613944817421, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e04b_SBRef", - "SeriesNumber": 10, - "SeriesTime": "181333.887000", + "SeriesDescription": "func_task-s01e05a_SBRef", + "SeriesNumber": 12, + "SeriesTime": "182551.552000", "SliceLocation": -41.424228035963, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "173550.501000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12485.0, + "WindowCenter": 12315.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 27240.0, + "WindowWidth": 26740.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-05/ses-002/func/sub-05_ses-002_task-s01e06a_sbref.nii.gz b/sub-05/ses-002/func/sub-05_ses-002_task-s01e06a_sbref.nii.gz new file mode 120000 index 00000000000..baa6a6368f8 --- /dev/null +++ b/sub-05/ses-002/func/sub-05_ses-002_task-s01e06a_sbref.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/45/8m/SHA256E-s1101734--e049c2692609c181e4ebbb6cd7d868ffe1b62fbd56151434a1f594d0bb96d35b.nii.gz/SHA256E-s1101734--e049c2692609c181e4ebbb6cd7d868ffe1b62fbd56151434a1f594d0bb96d35b.nii.gz \ No newline at end of file diff --git a/sub-05/ses-002/func/sub-05_ses-002_task-s01e06b_bold.json b/sub-05/ses-002/func/sub-05_ses-002_task-s01e06b_bold.json new file mode 100644 index 00000000000..55017bdcf34 --- /dev/null +++ b/sub-05/ses-002/func/sub-05_ses-002_task-s01e06b_bold.json @@ -0,0 +1,168 @@ +{ + "AcquisitionMatrixPE": 104, + "AcquisitionNumber": 1, + "AcquisitionTime": "18:37:1.380000", + "BandwidthPerPixelPhaseEncode": 17.17, + "BaseResolution": 104, + "BodyPartExamined": "BRAIN", + "CoilString": "HC1-7;NC1_2", + "ConsistencyInfo": "N4_VE11C_LATEST_20160120", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20190720 (JP2:OpenJPEG) GCC7.3.0", + "DerivedVendorReportedEchoSpacing": 0.000560011, + "DeviceSerialNumber": "167006", + 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21899.0, 21895.0, 21837.0, 21599.0, 21635.0, 21648.0] + }, + "slices": {} + } +} \ No newline at end of file diff --git a/sub-05/ses-002/func/sub-05_ses-002_task-s01e06b_bold.nii.gz b/sub-05/ses-002/func/sub-05_ses-002_task-s01e06b_bold.nii.gz new file mode 120000 index 00000000000..c13d35b81ea --- /dev/null +++ b/sub-05/ses-002/func/sub-05_ses-002_task-s01e06b_bold.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/XM/qP/SHA256E-s521700973--d08123d6752ec1424723c049de8ea9c5fa6aa0ed57f28c902aad762a7f0dca71.nii.gz/SHA256E-s521700973--d08123d6752ec1424723c049de8ea9c5fa6aa0ed57f28c902aad762a7f0dca71.nii.gz \ No newline at end of file diff --git a/sub-05/ses-002/func/sub-05_ses-002_task-s01e04a_sbref.json b/sub-05/ses-002/func/sub-05_ses-002_task-s01e06b_sbref.json similarity index 80% rename from sub-05/ses-002/func/sub-05_ses-002_task-s01e04a_sbref.json rename to sub-05/ses-002/func/sub-05_ses-002_task-s01e06b_sbref.json index 775e01be49d..0a05eae255e 100644 --- a/sub-05/ses-002/func/sub-05_ses-002_task-s01e04a_sbref.json +++ b/sub-05/ses-002/func/sub-05_ses-002_task-s01e06b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "17:59:55.835000", + "AcquisitionTime": "18:36:50.950000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e04a", + "ProtocolName": "func_task-s01e05b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0361332, + "SAR": 0.0361394, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e04a_SBRef", - "SeriesNumber": 8, + "SeriesDescription": "func_task-s01e05b_SBRef", + "SeriesNumber": 14, "ShimSetting": [615, -7259, -8848, 411, 50, -410, -8, 44], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.45, 2.5475, 2.645, 2.7425, 2.84, 2.94, 3.0375, 3.135, 3.2325, 3.33, 3.43, 3.5275, 3.625, 3.7225, 3.82, 3.9175, 4.0175, 4.115, 4.2125, 4.31, 4.4075, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78], + "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.3925, 0.49, 0.5875, 0.685, 0.7825, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.45, 2.5475, 2.645, 2.7425, 2.84, 2.94, 3.0375, 3.135, 3.2325, 3.33, 3.43, 3.5275, 3.625, 3.7225, 3.82, 3.92, 4.0175, 4.115, 4.2125, 4.31, 4.41, 4.5075, 4.605, 4.7025, 4.8, 4.9, 4.9975, 5.095, 5.1925, 5.29, 5.39, 5.4875, 5.585, 5.6825, 5.78], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 237.322, - "WipMemBlock": "f1ac0556-f2a1-4002-a991-cb7b087ca2d6||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "6723a400-04a9-4403-833f-b41928479db4||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9965603351593018, 0.06379079073667526, -0.0983738899230957, 98.36591339111328], [0.09832380712032318, 1.8250659704208374, -0.8120754361152649, -72.7469253540039], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "175955.835000", + "AcquisitionTime": "183650.950000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "180111.215000", + "ContentTime": "183831.215000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,9 +107,9 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259161, + "ImagingFrequency": 123.259188, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "180111.215000", + "InstanceCreationTime": "183831.215000", "InstanceNumber": 1, "LargestImagePixelValue": 65535, "MRAcquisitionType": "2D", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e04a", + "ProtocolName": "func_task-s01e05b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03613319450428, + "SAR": 0.03613944817421, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e04a_SBRef", - "SeriesNumber": 8, - "SeriesTime": "180111.211000", + "SeriesDescription": "func_task-s01e05b_SBRef", + "SeriesNumber": 14, + "SeriesTime": "183831.211000", "SliceLocation": -41.424228035963, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "173550.501000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12635.0, + "WindowCenter": 12386.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 27694.0, + "WindowWidth": 26938.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-05/ses-002/func/sub-05_ses-002_task-s01e06b_sbref.nii.gz b/sub-05/ses-002/func/sub-05_ses-002_task-s01e06b_sbref.nii.gz new file mode 120000 index 00000000000..c5a06f23d34 --- /dev/null +++ b/sub-05/ses-002/func/sub-05_ses-002_task-s01e06b_sbref.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/Fg/1Q/SHA256E-s1101210--9a19728bec67917d911975e95cc0350429607b2ef1c04845c8dfb16f24dde449.nii.gz/SHA256E-s1101210--9a19728bec67917d911975e95cc0350429607b2ef1c04845c8dfb16f24dde449.nii.gz \ No newline at end of file diff --git a/sub-05/ses-012/func/sub-05_ses-012_task-s01e02a_bold.json b/sub-05/ses-012/func/sub-05_ses-012_task-s01e02a_bold.json deleted file mode 100644 index 0a0ef970cc8..00000000000 --- a/sub-05/ses-012/func/sub-05_ses-012_task-s01e02a_bold.json +++ /dev/null @@ -1,168 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "18:59:13.825000", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190902", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": "167006", - "DwellTime": 2.1e-06, - "EchoTime": 0.037, - "EchoTrainLength": 104, - "EffectiveEchoSpacing": 0.000560011, - "FlipAngle": 52, - "ImageComments": "Unaliased_MB4_PE3_LB", - "ImageOrientationPatientDICOM": [0.999258, -0.033407, -0.0191451, 0.0238978, 0.927961, -0.37191], - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "MB", - "ND", - "MOSAIC" -], - "ImagingFrequency": 123.259, - "InPlanePhaseEncodingDirectionDICOM": "COL", - "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", - "InstitutionName": "IUGM", - "InstitutionalDepartmentName": "Department", - "MRAcquisitionType": "2D", - "MagneticFieldStrength": 3, - "Manufacturer": "Siemens", - "ManufacturersModelName": "Prisma_fit", - "Modality": "MR", - "MultibandAccelerationFactor": 4, - "PartialFourier": 1, - "PatientPosition": "HFS", - "PercentPhaseFOV": 100, - "PhaseEncodingDirection": "j", - "PhaseEncodingSteps": 104, - "PhaseResolution": 1, - "PixelBandwidth": 2290, - "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-friends-s01e02a", - "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", - "ReceiveCoilActiveElements": "HC1-7;NC1,2", - "ReceiveCoilName": "HeadNeck_64", - "ReconMatrixPE": 104, - "RepetitionTime": 1.49, - "SAR": 0.0437202, - "ScanOptions": "FS", - "ScanningSequence": "EP", - "SequenceName": "epfid2d1_104", - "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-friends-s01e02a", - "SeriesNumber": 9, - "ShimSetting": [620, -7297, -8814, 450, 27, -441, 40, 50], - "SliceThickness": 2, - "SliceTiming": [0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875], - "SoftwareVersions": "syngo_MR_E11", - "SpacingBetweenSlices": 2, - "StationName": "MRC35049", - "TaskName": "s01e02a", - "TotalReadoutTime": 0.0576811, - "TxRefAmp": 254.236, - "WipMemBlock": "f7e74378-e34b-4735-bfb6-f8f75cd1e475||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", - "dcmmeta_affine": [ - [-1.9985169172286987, 0.04779566079378128, -0.06038053333759308, 98.43819427490234], - [0.06681390851736069, 1.8559222221374512, -0.7423533797264099, -73.27723693847656], - [-0.038290150463581085, 0.7438200116157532, 1.8561426401138306, -56.5882682800293], - [0.0, 0.0, 0.0, 1.0] -], - "dcmmeta_reorient_transform": [ - [0.0, -1.0, 0.0, 103.0], - [1.0, 0.0, 0.0, 0.0], - [0.0, 0.0, 1.0, 0.0], - [0.0, 0.0, 0.0, 1.0] -], - "dcmmeta_shape": [104, 104, 60, 472], - "dcmmeta_slice_dim": 2, - "dcmmeta_version": 0.6, - "global": { - "const": { - "AcquisitionMatrix": [104, 0, 0, 104], - "AngioFlag": "N", - "BitsAllocated": 16, - "BitsStored": 16, - "BodyPartExamined": "BRAIN", - "Columns": 832, - "EchoNumbers": 1, - "EchoTime": 37.0, - "EchoTrainLength": 104, - "FlipAngle": 52.0, - "HighBit": 15, - "ImageOrientationPatient": [0.99925844580737, -0.0334069534917, -0.0191450761564, 0.0238978301742, 0.9279611208859, -0.3719100050243], - "ImagePositionPatient": [-848.21891654273, -769.11818645837, 304.71329057026], - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "MB", - "ND", - "MOSAIC" -], - "ImagedNucleus": "1H", - "ImagingFrequency": 123.258814, - "InPlanePhaseEncodingDirection": "COL", - "MRAcquisitionType": "2D", - "MagneticFieldStrength": 3.0, - "Manufacturer": "SIEMENS", - "ManufacturerModelName": "Prisma_fit", - "Modality": "MR", - "NumberOfAverages": 1.0, - "NumberOfPhaseEncodingSteps": 104, - "PercentPhaseFieldOfView": 100.0, - "PercentSampling": 100.0, - "PerformedProcedureStepStartTime": "185538.702000", - "PhotometricInterpretation": "MONOCHROME2", - "PixelBandwidth": 2290.0, - "PixelRepresentation": 0, - "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-friends-s01e02a", - "RepetitionTime": 1490.0, - "Rows": 832, - "SAR": 0.0437201510301, - "SamplesPerPixel": 1, - "ScanOptions": "FS", - "ScanningSequence": "EP", - "SequenceName": "epfid2d1_104", - "SequenceVariant": [ - "SK", - "SS" -], - "SeriesDescription": "func_task-friends-s01e02a", - "SeriesNumber": 9, - "SeriesTime": "190057.226000", - "SliceLocation": -28.291023955054, - "SliceThickness": 2.0, - "SmallestImagePixelValue": 0, - "SoftwareVersions": "syngo MR E11", - "SpacingBetweenSlices": 2.0000000079724, - "SpecificCharacterSet": "ISO_IR 100", - "StudyID": "1", - "StudyTime": "185538.626000", - "TransmitCoilName": "Body", - "VariableFlipAngleFlag": "N", - "WindowCenterWidthExplanation": "Algo1", - "dBdt": 0.0}, - "slices": {} - }, - "time": { - "samples": { - "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 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b/sub-05/ses-012/func/sub-05_ses-012_task-s01e02b_bold.nii.gz deleted file mode 120000 index f037b05519d..00000000000 --- a/sub-05/ses-012/func/sub-05_ses-012_task-s01e02b_bold.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/Wz/p2/SHA256E-s494366136--fcf793723a7912f1323483177b2598e110d2b55926863f472a0112bea6df8773.nii.gz/SHA256E-s494366136--fcf793723a7912f1323483177b2598e110d2b55926863f472a0112bea6df8773.nii.gz \ No newline at end of file diff --git a/sub-05/ses-012/func/sub-05_ses-012_task-s01e02b_sbref.nii.gz b/sub-05/ses-012/func/sub-05_ses-012_task-s01e02b_sbref.nii.gz deleted file mode 120000 index 951dbc78fa7..00000000000 --- a/sub-05/ses-012/func/sub-05_ses-012_task-s01e02b_sbref.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/mM/z1/SHA256E-s1081381--5dff8bb4831852290e64035a61d47dc53e177ff629a8894c98fb603b54747011.nii.gz/SHA256E-s1081381--5dff8bb4831852290e64035a61d47dc53e177ff629a8894c98fb603b54747011.nii.gz \ No newline at end of file diff --git a/sub-05/ses-012/func/sub-05_ses-012_task-s01e03a_bold.json b/sub-05/ses-012/func/sub-05_ses-012_task-s01e03a_bold.json index dccba8200c6..0a0ef970cc8 100644 --- a/sub-05/ses-012/func/sub-05_ses-012_task-s01e03a_bold.json +++ b/sub-05/ses-012/func/sub-05_ses-012_task-s01e03a_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "19:23:24.647500", + "AcquisitionTime": "18:59:13.825000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -45,29 +45,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-friends-s01e03a", + "ProtocolName": "func_task-friends-s01e02a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0437314, + "SAR": 0.0437202, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-friends-s01e03a", - "SeriesNumber": 13, + "SeriesDescription": "func_task-friends-s01e02a", + "SeriesNumber": 9, "ShimSetting": [620, -7297, -8814, 450, 27, -441, 40, 50], "SliceThickness": 2, - "SliceTiming": [0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.275, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.275, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.275, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.275, 0.5875, 1.3725, 0.685], + "SliceTiming": [0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", - "TaskName": "s01e03a", + "TaskName": "s01e02a", "TotalReadoutTime": 0.0576811, "TxRefAmp": 254.236, - "WipMemBlock": "8e96c832-cb6c-4f58-bd18-38f43c1f5b12||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "f7e74378-e34b-4735-bfb6-f8f75cd1e475||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9985169172286987, 0.04779566079378128, -0.06038053333759308, 98.43819427490234], [0.06681390851736069, 1.8559222221374512, -0.7423533797264099, -73.27723693847656], @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 503], + "dcmmeta_shape": [104, 104, 60, 472], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.25882, + "ImagingFrequency": 123.258814, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-friends-s01e03a", + "ProtocolName": "func_task-friends-s01e02a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.04373144279, + "SAR": 0.0437201510301, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,9 +135,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-friends-s01e03a", - "SeriesNumber": 13, - "SeriesTime": "192445.516000", + "SeriesDescription": "func_task-friends-s01e02a", + "SeriesNumber": 9, + "SeriesTime": "190057.226000", "SliceLocation": -28.291023955054, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -154,14 +154,14 @@ }, "time": { "samples": { - "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 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22059.0, 22074.0, 22053.0, 22055.0, 22093.0, 22119.0, 22081.0, 22037.0, 22011.0, 21984.0, 21967.0, 22001.0, 22046.0, 22008.0, 22005.0, 21989.0, 21999.0, 22033.0, 21984.0, 22033.0, 22018.0, 21993.0, 21956.0, 21946.0, 21978.0, 22022.0, 22057.0, 21977.0, 22013.0, 21929.0, 21849.0, 21753.0, 22202.0, 21825.0, 21459.0, 21544.0, 21636.0, 21754.0, 21794.0, 21772.0, 21765.0, 21750.0, 21766.0, 21833.0, 21802.0, 21785.0, 21702.0] }, "slices": {} } diff --git a/sub-05/ses-012/func/sub-05_ses-012_task-s01e03a_bold.nii.gz b/sub-05/ses-012/func/sub-05_ses-012_task-s01e03a_bold.nii.gz index 975dea8301e..836fae35508 120000 --- a/sub-05/ses-012/func/sub-05_ses-012_task-s01e03a_bold.nii.gz +++ b/sub-05/ses-012/func/sub-05_ses-012_task-s01e03a_bold.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/7m/f3/SHA256E-s526617082--df9f2af3ab97cdba58be782c29b4929747a7630dc23ab20de4bdc033c9ddbbb2.nii.gz/SHA256E-s526617082--df9f2af3ab97cdba58be782c29b4929747a7630dc23ab20de4bdc033c9ddbbb2.nii.gz \ No newline at end of file +../../../.git/annex/objects/qv/gJ/SHA256E-s494632957--6a1e8344b3c15bff358c6d157c12682caa43732ffe91057c6202e1153c83a624.nii.gz/SHA256E-s494632957--6a1e8344b3c15bff358c6d157c12682caa43732ffe91057c6202e1153c83a624.nii.gz \ No newline at end of file diff --git a/sub-05/ses-012/func/sub-05_ses-012_task-s01e03a_sbref.json b/sub-05/ses-012/func/sub-05_ses-012_task-s01e03a_sbref.json index 7f4f98222b2..23eacbafea2 100644 --- a/sub-05/ses-012/func/sub-05_ses-012_task-s01e03a_sbref.json +++ b/sub-05/ses-012/func/sub-05_ses-012_task-s01e03a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "19:23:14.217500", + "AcquisitionTime": "18:59:3.395000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-friends-s01e03a", + "ProtocolName": "func_task-friends-s01e02a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0437314, + "SAR": 0.0437202, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-friends-s01e03a_SBRef", - "SeriesNumber": 12, + "SeriesDescription": "func_task-friends-s01e02a_SBRef", + "SeriesNumber": 8, "ShimSetting": [620, -7297, -8814, 450, 27, -441, 40, 50], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.295, 0.3925, 0.49, 0.5875, 0.685, 0.785, 0.8825, 0.98, 1.0775, 1.175, 1.275, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.3125, 4.41, 4.5075, 4.605, 4.7025, 4.8025, 4.9, 4.9975, 5.095, 5.1925, 5.2925, 5.39, 5.4875, 5.585, 5.6825, 5.7825], + "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.08, 1.1775, 1.275, 1.3725, 1.47, 1.57, 1.6675, 1.765, 1.8625, 1.96, 2.06, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", - "TaskName": "s01e03a", + "TaskName": "s01e02a", "TotalReadoutTime": 0.0576811, "TxRefAmp": 254.236, - "WipMemBlock": "8e96c832-cb6c-4f58-bd18-38f43c1f5b12||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "f7e74378-e34b-4735-bfb6-f8f75cd1e475||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9985169172286987, 0.04779566079378128, -0.06038053333759308, 98.43819427490234], [0.06681390851736069, 1.8559222221374512, -0.7423533797264099, -73.27723693847656], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "192314.217500", + "AcquisitionTime": "185903.395000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "192445.493000", + "ContentTime": "190057.206000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,9 +107,9 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.25882, + "ImagingFrequency": 123.258814, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "192445.493000", + "InstanceCreationTime": "190057.206000", "InstanceNumber": 1, "LargestImagePixelValue": 65535, "MRAcquisitionType": "2D", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-friends-s01e03a", + "ProtocolName": "func_task-friends-s01e02a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.04373144279, + "SAR": 0.0437201510301, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-friends-s01e03a_SBRef", - "SeriesNumber": 12, - "SeriesTime": "192445.490000", + "SeriesDescription": "func_task-friends-s01e02a_SBRef", + "SeriesNumber": 8, + "SeriesTime": "190057.202000", "SliceLocation": -28.291023955054, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "185538.626000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12385.0, + "WindowCenter": 12363.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 26989.0, + "WindowWidth": 26917.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-05/ses-012/func/sub-05_ses-012_task-s01e03a_sbref.nii.gz b/sub-05/ses-012/func/sub-05_ses-012_task-s01e03a_sbref.nii.gz index c19edf57931..ef169f5d9c8 120000 --- a/sub-05/ses-012/func/sub-05_ses-012_task-s01e03a_sbref.nii.gz +++ b/sub-05/ses-012/func/sub-05_ses-012_task-s01e03a_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/8z/4F/SHA256E-s1081961--2d75cfc433544f74644aacc406202333b2a97eba0b0a8be1915520858c9be38d.nii.gz/SHA256E-s1081961--2d75cfc433544f74644aacc406202333b2a97eba0b0a8be1915520858c9be38d.nii.gz \ No newline at end of file +../../../.git/annex/objects/KZ/pj/SHA256E-s1082227--f9290c352dd8e969136686fa0b15e5cae81ee629a608f663c5f6b2aa5f748532.nii.gz/SHA256E-s1082227--f9290c352dd8e969136686fa0b15e5cae81ee629a608f663c5f6b2aa5f748532.nii.gz \ No newline at end of file diff --git a/sub-05/ses-012/func/sub-05_ses-012_task-s01e03b_bold.json b/sub-05/ses-012/func/sub-05_ses-012_task-s01e03b_bold.json index 5302bc48a10..5329ad687ae 100644 --- a/sub-05/ses-012/func/sub-05_ses-012_task-s01e03b_bold.json +++ b/sub-05/ses-012/func/sub-05_ses-012_task-s01e03b_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "19:36:21.492500", + "AcquisitionTime": "19:11:19.217500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -45,29 +45,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-friends-s01e03b", + "ProtocolName": "func_task-friends-s01e02b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0437314, + "SAR": 0.0437202, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-friends-s01e03b", - "SeriesNumber": 15, + "SeriesDescription": "func_task-friends-s01e02b", + "SeriesNumber": 11, "ShimSetting": [620, -7297, -8814, 450, 27, -441, 40, 50], "SliceThickness": 2, "SliceTiming": [0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 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-../../../.git/annex/objects/8v/kZ/SHA256E-s526460635--904a3cb912e47ed2df9ab799aca40e695b015547cfbf0cde1ae5efdc40301416.nii.gz/SHA256E-s526460635--904a3cb912e47ed2df9ab799aca40e695b015547cfbf0cde1ae5efdc40301416.nii.gz \ No newline at end of file +../../../.git/annex/objects/Wz/p2/SHA256E-s494366136--fcf793723a7912f1323483177b2598e110d2b55926863f472a0112bea6df8773.nii.gz/SHA256E-s494366136--fcf793723a7912f1323483177b2598e110d2b55926863f472a0112bea6df8773.nii.gz \ No newline at end of file diff --git a/sub-05/ses-012/func/sub-05_ses-012_task-s01e03b_sbref.json b/sub-05/ses-012/func/sub-05_ses-012_task-s01e03b_sbref.json index 396d6fff12e..b46b011c11d 100644 --- a/sub-05/ses-012/func/sub-05_ses-012_task-s01e03b_sbref.json +++ b/sub-05/ses-012/func/sub-05_ses-012_task-s01e03b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "19:36:11.062500", + "AcquisitionTime": "19:11:8.787500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-friends-s01e03b", + "ProtocolName": "func_task-friends-s01e02b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0437314, + "SAR": 0.0437202, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-friends-s01e03b_SBRef", - "SeriesNumber": 14, + "SeriesDescription": "func_task-friends-s01e02b_SBRef", + "SeriesNumber": 10, "ShimSetting": [620, -7297, -8814, 450, 27, -441, 40, 50], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.3925, 0.49, 0.5875, 0.685, 0.7825, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.33, 3.43, 3.5275, 3.625, 3.7225, 3.82, 3.92, 4.0175, 4.115, 4.2125, 4.31, 4.41, 4.5075, 4.605, 4.7025, 4.8, 4.9, 4.9975, 5.095, 5.1925, 5.29, 5.39, 5.4875, 5.585, 5.6825, 5.78], + "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.3925, 0.49, 0.5875, 0.685, 0.7825, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.3125, 4.41, 4.5075, 4.605, 4.7025, 4.8, 4.9, 4.9975, 5.095, 5.1925, 5.29, 5.39, 5.4875, 5.585, 5.6825, 5.78], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", - "TaskName": "s01e03b", + "TaskName": "s01e02b", "TotalReadoutTime": 0.0576811, "TxRefAmp": 254.236, - "WipMemBlock": "efdb022a-7b31-424e-9222-cca45880df20||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "389ea7a5-858f-4100-afdc-1e5a85e7ff3e||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9985169172286987, 0.04779566079378128, -0.06038053333759308, 98.43819427490234], [0.06681390851736069, 1.8559222221374512, -0.7423533797264099, -73.27723693847656], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "193611.062500", + "AcquisitionTime": "191108.787500", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "193737.196000", + "ContentTime": "191241.089000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,9 +107,9 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.258821, + "ImagingFrequency": 123.258815, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "193737.196000", + "InstanceCreationTime": "191241.089000", "InstanceNumber": 1, "LargestImagePixelValue": 65535, "MRAcquisitionType": "2D", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-friends-s01e03b", + "ProtocolName": "func_task-friends-s01e02b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.04373144279, + "SAR": 0.0437201510301, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-friends-s01e03b_SBRef", - "SeriesNumber": 14, - "SeriesTime": "193737.192000", + "SeriesDescription": "func_task-friends-s01e02b_SBRef", + "SeriesNumber": 10, + "SeriesTime": "191241.085000", "SliceLocation": -28.291023955054, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "185538.626000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12399.0, + "WindowCenter": 12289.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 27060.0, + "WindowWidth": 26695.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-05/ses-012/func/sub-05_ses-012_task-s01e03b_sbref.nii.gz b/sub-05/ses-012/func/sub-05_ses-012_task-s01e03b_sbref.nii.gz index 9ef6e098e71..951dbc78fa7 120000 --- a/sub-05/ses-012/func/sub-05_ses-012_task-s01e03b_sbref.nii.gz +++ b/sub-05/ses-012/func/sub-05_ses-012_task-s01e03b_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/V6/WW/SHA256E-s1082127--f0b1dc69d81f8ffeb9b18c53932554fb3a2cdcfd3f8afe2032d723c0ad948eed.nii.gz/SHA256E-s1082127--f0b1dc69d81f8ffeb9b18c53932554fb3a2cdcfd3f8afe2032d723c0ad948eed.nii.gz \ No newline at end of file +../../../.git/annex/objects/mM/z1/SHA256E-s1081381--5dff8bb4831852290e64035a61d47dc53e177ff629a8894c98fb603b54747011.nii.gz/SHA256E-s1081381--5dff8bb4831852290e64035a61d47dc53e177ff629a8894c98fb603b54747011.nii.gz \ No newline at end of file diff --git a/sub-05/ses-012/func/sub-05_ses-012_task-s01e04a_bold.json b/sub-05/ses-012/func/sub-05_ses-012_task-s01e04a_bold.json new file mode 100644 index 00000000000..dccba8200c6 --- /dev/null +++ b/sub-05/ses-012/func/sub-05_ses-012_task-s01e04a_bold.json @@ -0,0 +1,168 @@ +{ + "AcquisitionMatrixPE": 104, + "AcquisitionNumber": 1, + "AcquisitionTime": "19:23:24.647500", + "BandwidthPerPixelPhaseEncode": 17.17, + "BaseResolution": 104, + "BodyPartExamined": "BRAIN", + "CoilString": "HC1-7;NC1_2", + "ConsistencyInfo": "N4_VE11C_LATEST_20160120", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20190902", + "DerivedVendorReportedEchoSpacing": 0.000560011, + "DeviceSerialNumber": "167006", + "DwellTime": 2.1e-06, + "EchoTime": 0.037, + "EchoTrainLength": 104, + "EffectiveEchoSpacing": 0.000560011, + "FlipAngle": 52, + "ImageComments": "Unaliased_MB4_PE3_LB", + "ImageOrientationPatientDICOM": [0.999258, -0.033407, -0.0191451, 0.0238978, 0.927961, -0.37191], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + 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21864.0, 22006.0, 21912.0, 21890.0] + }, + "slices": {} + } +} \ No newline at end of file diff --git a/sub-05/ses-012/func/sub-05_ses-012_task-s01e04a_bold.nii.gz b/sub-05/ses-012/func/sub-05_ses-012_task-s01e04a_bold.nii.gz new file mode 120000 index 00000000000..975dea8301e --- /dev/null +++ b/sub-05/ses-012/func/sub-05_ses-012_task-s01e04a_bold.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/7m/f3/SHA256E-s526617082--df9f2af3ab97cdba58be782c29b4929747a7630dc23ab20de4bdc033c9ddbbb2.nii.gz/SHA256E-s526617082--df9f2af3ab97cdba58be782c29b4929747a7630dc23ab20de4bdc033c9ddbbb2.nii.gz \ No newline at end of file diff --git a/sub-05/ses-012/func/sub-05_ses-012_task-s01e02a_sbref.json b/sub-05/ses-012/func/sub-05_ses-012_task-s01e04a_sbref.json similarity index 79% rename from sub-05/ses-012/func/sub-05_ses-012_task-s01e02a_sbref.json rename to sub-05/ses-012/func/sub-05_ses-012_task-s01e04a_sbref.json index 23eacbafea2..7f4f98222b2 100644 --- a/sub-05/ses-012/func/sub-05_ses-012_task-s01e02a_sbref.json +++ b/sub-05/ses-012/func/sub-05_ses-012_task-s01e04a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "18:59:3.395000", + "AcquisitionTime": "19:23:14.217500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-friends-s01e02a", + "ProtocolName": "func_task-friends-s01e03a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0437202, + "SAR": 0.0437314, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-friends-s01e02a_SBRef", - "SeriesNumber": 8, + "SeriesDescription": "func_task-friends-s01e03a_SBRef", + "SeriesNumber": 12, "ShimSetting": [620, -7297, -8814, 450, 27, -441, 40, 50], "SliceThickness": 2, - "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.08, 1.1775, 1.275, 1.3725, 1.47, 1.57, 1.6675, 1.765, 1.8625, 1.96, 2.06, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825], + "SliceTiming": [0, 0.0975, 0.195, 0.295, 0.3925, 0.49, 0.5875, 0.685, 0.785, 0.8825, 0.98, 1.0775, 1.175, 1.275, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.3125, 4.41, 4.5075, 4.605, 4.7025, 4.8025, 4.9, 4.9975, 5.095, 5.1925, 5.2925, 5.39, 5.4875, 5.585, 5.6825, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", - "TaskName": "s01e02a", + "TaskName": "s01e03a", "TotalReadoutTime": 0.0576811, "TxRefAmp": 254.236, - "WipMemBlock": "f7e74378-e34b-4735-bfb6-f8f75cd1e475||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "8e96c832-cb6c-4f58-bd18-38f43c1f5b12||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9985169172286987, 0.04779566079378128, -0.06038053333759308, 98.43819427490234], [0.06681390851736069, 1.8559222221374512, -0.7423533797264099, -73.27723693847656], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "185903.395000", + "AcquisitionTime": "192314.217500", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "190057.206000", + "ContentTime": "192445.493000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,9 +107,9 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.258814, + "ImagingFrequency": 123.25882, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "190057.206000", + "InstanceCreationTime": "192445.493000", "InstanceNumber": 1, "LargestImagePixelValue": 65535, "MRAcquisitionType": "2D", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-friends-s01e02a", + "ProtocolName": "func_task-friends-s01e03a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.0437201510301, + "SAR": 0.04373144279, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-friends-s01e02a_SBRef", - "SeriesNumber": 8, - "SeriesTime": "190057.202000", + "SeriesDescription": "func_task-friends-s01e03a_SBRef", + "SeriesNumber": 12, + "SeriesTime": "192445.490000", "SliceLocation": -28.291023955054, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "185538.626000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12363.0, + "WindowCenter": 12385.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 26917.0, + "WindowWidth": 26989.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-05/ses-012/func/sub-05_ses-012_task-s01e04a_sbref.nii.gz b/sub-05/ses-012/func/sub-05_ses-012_task-s01e04a_sbref.nii.gz new file mode 120000 index 00000000000..c19edf57931 --- /dev/null +++ b/sub-05/ses-012/func/sub-05_ses-012_task-s01e04a_sbref.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/8z/4F/SHA256E-s1081961--2d75cfc433544f74644aacc406202333b2a97eba0b0a8be1915520858c9be38d.nii.gz/SHA256E-s1081961--2d75cfc433544f74644aacc406202333b2a97eba0b0a8be1915520858c9be38d.nii.gz \ No newline at end of file diff --git a/sub-05/ses-012/func/sub-05_ses-012_task-s01e04b_bold.json b/sub-05/ses-012/func/sub-05_ses-012_task-s01e04b_bold.json new file mode 100644 index 00000000000..5302bc48a10 --- /dev/null +++ b/sub-05/ses-012/func/sub-05_ses-012_task-s01e04b_bold.json @@ -0,0 +1,168 @@ +{ + "AcquisitionMatrixPE": 104, + "AcquisitionNumber": 1, + "AcquisitionTime": "19:36:21.492500", + "BandwidthPerPixelPhaseEncode": 17.17, + "BaseResolution": 104, + "BodyPartExamined": "BRAIN", + "CoilString": "HC1-7;NC1_2", + "ConsistencyInfo": "N4_VE11C_LATEST_20160120", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20190902", + "DerivedVendorReportedEchoSpacing": 0.000560011, + "DeviceSerialNumber": "167006", + "DwellTime": 2.1e-06, + "EchoTime": 0.037, + "EchoTrainLength": 104, + "EffectiveEchoSpacing": 0.000560011, + "FlipAngle": 52, + "ImageComments": "Unaliased_MB4_PE3_LB", + "ImageOrientationPatientDICOM": [0.999258, -0.033407, -0.0191451, 0.0238978, 0.927961, -0.37191], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagingFrequency": 123.259, + "InPlanePhaseEncodingDirectionDICOM": "COL", + "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", + "InstitutionName": "IUGM", + "InstitutionalDepartmentName": "Department", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma_fit", + "Modality": "MR", + "MultibandAccelerationFactor": 4, + "PartialFourier": 1, + "PatientPosition": "HFS", + "PercentPhaseFOV": 100, + "PhaseEncodingDirection": "j", + "PhaseEncodingSteps": 104, + "PhaseResolution": 1, + "PixelBandwidth": 2290, + "ProcedureStepDescription": "video_friends", + "ProtocolName": "func_task-friends-s01e03b", + "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", + "ReceiveCoilActiveElements": "HC1-7;NC1,2", + "ReceiveCoilName": "HeadNeck_64", + "ReconMatrixPE": 104, + "RepetitionTime": 1.49, + "SAR": 0.0437314, + "ScanOptions": "FS", + "ScanningSequence": "EP", + "SequenceName": "epfid2d1_104", + "SequenceVariant": "SK_SS", + "SeriesDescription": "func_task-friends-s01e03b", + "SeriesNumber": 15, + "ShimSetting": [620, -7297, -8814, 450, 27, -441, 40, 50], + "SliceThickness": 2, + "SliceTiming": [0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685], + "SoftwareVersions": "syngo_MR_E11", + "SpacingBetweenSlices": 2, + "StationName": "MRC35049", + "TaskName": "s01e03b", + "TotalReadoutTime": 0.0576811, + "TxRefAmp": 254.236, + "WipMemBlock": "efdb022a-7b31-424e-9222-cca45880df20||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "dcmmeta_affine": [ + [-1.9985169172286987, 0.04779566079378128, -0.06038053333759308, 98.43819427490234], + [0.06681390851736069, 1.8559222221374512, -0.7423533797264099, -73.27723693847656], + [-0.038290150463581085, 0.7438200116157532, 1.8561426401138306, -56.5882682800293], + [0.0, 0.0, 0.0, 1.0] +], + "dcmmeta_reorient_transform": [ + [0.0, -1.0, 0.0, 103.0], + [1.0, 0.0, 0.0, 0.0], + [0.0, 0.0, 1.0, 0.0], + [0.0, 0.0, 0.0, 1.0] +], + "dcmmeta_shape": [104, 104, 60, 503], + "dcmmeta_slice_dim": 2, + "dcmmeta_version": 0.6, + "global": { + "const": { + "AcquisitionMatrix": [104, 0, 0, 104], + "AngioFlag": "N", + "BitsAllocated": 16, + "BitsStored": 16, + "BodyPartExamined": "BRAIN", + "Columns": 832, + "EchoNumbers": 1, + "EchoTime": 37.0, + "EchoTrainLength": 104, + "FlipAngle": 52.0, + "HighBit": 15, + "ImageOrientationPatient": [0.99925844580737, -0.0334069534917, -0.0191450761564, 0.0238978301742, 0.9279611208859, -0.3719100050243], + "ImagePositionPatient": [-848.21891654273, -769.11818645837, 304.71329057026], + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "MB", + "ND", + "MOSAIC" +], + "ImagedNucleus": "1H", + "ImagingFrequency": 123.258821, + "InPlanePhaseEncodingDirection": "COL", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3.0, + "Manufacturer": "SIEMENS", + "ManufacturerModelName": "Prisma_fit", + "Modality": "MR", + "NumberOfAverages": 1.0, + "NumberOfPhaseEncodingSteps": 104, + "PercentPhaseFieldOfView": 100.0, + "PercentSampling": 100.0, + "PerformedProcedureStepStartTime": "185538.702000", + "PhotometricInterpretation": "MONOCHROME2", + "PixelBandwidth": 2290.0, + "PixelRepresentation": 0, + "PixelSpacing": [2.0, 2.0], + "ProtocolName": "func_task-friends-s01e03b", + "RepetitionTime": 1490.0, + "Rows": 832, + "SAR": 0.04373144279, + "SamplesPerPixel": 1, + "ScanOptions": "FS", + "ScanningSequence": "EP", + "SequenceName": "epfid2d1_104", + "SequenceVariant": [ + "SK", + "SS" +], + "SeriesDescription": "func_task-friends-s01e03b", + "SeriesNumber": 15, + "SeriesTime": "193737.227000", + "SliceLocation": -28.291023955054, + "SliceThickness": 2.0, + "SmallestImagePixelValue": 0, + "SoftwareVersions": "syngo MR E11", + "SpacingBetweenSlices": 2.0000000079724, + "SpecificCharacterSet": "ISO_IR 100", + "StudyID": "1", + "StudyTime": "185538.626000", + "TransmitCoilName": "Body", + "VariableFlipAngleFlag": "N", + "WindowCenterWidthExplanation": "Algo1", + "dBdt": 0.0}, + "slices": {} + }, + "time": { + "samples": { + "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 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21518.0, 21464.0, 21405.0, 21417.0, 21423.0, 21420.0, 21413.0, 21409.0, 21397.0, 21444.0, 21517.0, 21543.0, 21547.0] + }, + "slices": {} + } +} \ No newline at end of file diff --git a/sub-05/ses-012/func/sub-05_ses-012_task-s01e04b_bold.nii.gz b/sub-05/ses-012/func/sub-05_ses-012_task-s01e04b_bold.nii.gz new file mode 120000 index 00000000000..ba88e63ce91 --- /dev/null +++ b/sub-05/ses-012/func/sub-05_ses-012_task-s01e04b_bold.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/8v/kZ/SHA256E-s526460635--904a3cb912e47ed2df9ab799aca40e695b015547cfbf0cde1ae5efdc40301416.nii.gz/SHA256E-s526460635--904a3cb912e47ed2df9ab799aca40e695b015547cfbf0cde1ae5efdc40301416.nii.gz \ No newline at end of file diff --git a/sub-05/ses-012/func/sub-05_ses-012_task-s01e02b_sbref.json b/sub-05/ses-012/func/sub-05_ses-012_task-s01e04b_sbref.json similarity index 84% rename from sub-05/ses-012/func/sub-05_ses-012_task-s01e02b_sbref.json rename to sub-05/ses-012/func/sub-05_ses-012_task-s01e04b_sbref.json index b46b011c11d..396d6fff12e 100644 --- a/sub-05/ses-012/func/sub-05_ses-012_task-s01e02b_sbref.json +++ b/sub-05/ses-012/func/sub-05_ses-012_task-s01e04b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "19:11:8.787500", + "AcquisitionTime": "19:36:11.062500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-friends-s01e02b", + "ProtocolName": "func_task-friends-s01e03b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0437202, + "SAR": 0.0437314, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-friends-s01e02b_SBRef", - "SeriesNumber": 10, + "SeriesDescription": "func_task-friends-s01e03b_SBRef", + "SeriesNumber": 14, "ShimSetting": [620, -7297, -8814, 450, 27, -441, 40, 50], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.3925, 0.49, 0.5875, 0.685, 0.7825, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.3125, 4.41, 4.5075, 4.605, 4.7025, 4.8, 4.9, 4.9975, 5.095, 5.1925, 5.29, 5.39, 5.4875, 5.585, 5.6825, 5.78], + "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.3925, 0.49, 0.5875, 0.685, 0.7825, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.33, 3.43, 3.5275, 3.625, 3.7225, 3.82, 3.92, 4.0175, 4.115, 4.2125, 4.31, 4.41, 4.5075, 4.605, 4.7025, 4.8, 4.9, 4.9975, 5.095, 5.1925, 5.29, 5.39, 5.4875, 5.585, 5.6825, 5.78], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", - "TaskName": "s01e02b", + "TaskName": "s01e03b", "TotalReadoutTime": 0.0576811, "TxRefAmp": 254.236, - "WipMemBlock": "389ea7a5-858f-4100-afdc-1e5a85e7ff3e||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "efdb022a-7b31-424e-9222-cca45880df20||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9985169172286987, 0.04779566079378128, -0.06038053333759308, 98.43819427490234], [0.06681390851736069, 1.8559222221374512, -0.7423533797264099, -73.27723693847656], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "191108.787500", + "AcquisitionTime": "193611.062500", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "191241.089000", + "ContentTime": "193737.196000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,9 +107,9 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.258815, + "ImagingFrequency": 123.258821, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "191241.089000", + "InstanceCreationTime": "193737.196000", "InstanceNumber": 1, "LargestImagePixelValue": 65535, "MRAcquisitionType": "2D", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-friends-s01e02b", + "ProtocolName": "func_task-friends-s01e03b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.0437201510301, + "SAR": 0.04373144279, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-friends-s01e02b_SBRef", - "SeriesNumber": 10, - "SeriesTime": "191241.085000", + "SeriesDescription": "func_task-friends-s01e03b_SBRef", + "SeriesNumber": 14, + "SeriesTime": "193737.192000", "SliceLocation": -28.291023955054, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "185538.626000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12289.0, + "WindowCenter": 12399.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 26695.0, + "WindowWidth": 27060.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-05/ses-012/func/sub-05_ses-012_task-s01e04b_sbref.nii.gz b/sub-05/ses-012/func/sub-05_ses-012_task-s01e04b_sbref.nii.gz new file mode 120000 index 00000000000..9ef6e098e71 --- /dev/null +++ b/sub-05/ses-012/func/sub-05_ses-012_task-s01e04b_sbref.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/V6/WW/SHA256E-s1082127--f0b1dc69d81f8ffeb9b18c53932554fb3a2cdcfd3f8afe2032d723c0ad948eed.nii.gz/SHA256E-s1082127--f0b1dc69d81f8ffeb9b18c53932554fb3a2cdcfd3f8afe2032d723c0ad948eed.nii.gz \ No newline at end of file diff --git a/sub-05/ses-020/func/sub-05_ses-020_task-s04e01b_bold.json b/sub-05/ses-020/func/sub-05_ses-020_task-s04e01b_bold.json deleted file mode 100644 index 1af444e93b3..00000000000 --- a/sub-05/ses-020/func/sub-05_ses-020_task-s04e01b_bold.json +++ /dev/null @@ -1,168 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "18:08:6.512500", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190902", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": "167006", - "DwellTime": 2.1e-06, - "EchoTime": 0.037, - "EchoTrainLength": 104, - "EffectiveEchoSpacing": 0.000560011, - "FlipAngle": 52, - "ImageComments": "Unaliased_MB4_PE3_LB", - "ImageOrientationPatientDICOM": [0.999349, -0.0348971, -0.00911286, 0.0282634, 0.914672, -0.403208], - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "MB", - "ND", - "MOSAIC" -], - "ImagingFrequency": 123.259, - "InPlanePhaseEncodingDirectionDICOM": "COL", - "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", - "InstitutionName": "IUGM", - "InstitutionalDepartmentName": "Department", - "MRAcquisitionType": "2D", - "MagneticFieldStrength": 3, - "Manufacturer": "Siemens", - "ManufacturersModelName": "Prisma_fit", - "Modality": "MR", - "MultibandAccelerationFactor": 4, - "PartialFourier": 1, - "PatientPosition": "HFS", - "PercentPhaseFOV": 100, - "PhaseEncodingDirection": "j", - "PhaseEncodingSteps": 104, - "PhaseResolution": 1, - "PixelBandwidth": 2290, - "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-friends-s04e01b", - "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", - "ReceiveCoilActiveElements": "HC1-7;NC1,2", - "ReceiveCoilName": "HeadNeck_64", - "ReconMatrixPE": 104, - "RepetitionTime": 1.49, - "SAR": 0.0433424, - 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a/sub-05/ses-020/func/sub-05_ses-020_task-s04e01b_sbref.json b/sub-05/ses-020/func/sub-05_ses-020_task-s04e01b_sbref.json deleted file mode 100644 index 55bc13a664a..00000000000 --- a/sub-05/ses-020/func/sub-05_ses-020_task-s04e01b_sbref.json +++ /dev/null @@ -1,160 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "18:07:56.082500", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190902", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": "167006", - "DwellTime": 2.1e-06, - "EchoTime": 0.037, - "EchoTrainLength": 104, - "EffectiveEchoSpacing": 0.000560011, - "FlipAngle": 52, - "ImageComments": "Single-band_reference", - "ImageOrientationPatientDICOM": [0.999349, -0.0348971, -0.00911286, 0.0282634, 0.914672, -0.403208], - 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a/sub-05/ses-020/func/sub-05_ses-020_task-s04e01b_sbref.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/0w/1q/SHA256E-s1082947--578e69f48df968d352579ea27a54f7e6e443bf9707fd719a6fcd2bd44be1bb0e.nii.gz/SHA256E-s1082947--578e69f48df968d352579ea27a54f7e6e443bf9707fd719a6fcd2bd44be1bb0e.nii.gz \ No newline at end of file diff --git a/sub-05/ses-020/sub-05_ses-020_scans.tsv b/sub-05/ses-020/sub-05_ses-020_scans.tsv index 1465f42609a..da5284574ab 120000 --- a/sub-05/ses-020/sub-05_ses-020_scans.tsv +++ b/sub-05/ses-020/sub-05_ses-020_scans.tsv @@ -1 +1 @@ -../../.git/annex/objects/jX/4V/SHA256E-s2177--72de5887faeab5c58301fe228d9328130bf1fd87ae6881155932d821e0cc2b39.tsv/SHA256E-s2177--72de5887faeab5c58301fe228d9328130bf1fd87ae6881155932d821e0cc2b39.tsv \ No newline at end of file +../../.git/annex/objects/0W/m7/SHA256E-s1453--82fc2eeba8ecfb65454565cbcd5d8f5ffeda66835f1b1aaba5192f674320e683.tsv/SHA256E-s1453--82fc2eeba8ecfb65454565cbcd5d8f5ffeda66835f1b1aaba5192f674320e683.tsv \ No newline at end of file diff --git a/sub-05/ses-024/func/sub-05_ses-024_task-s04e13b_bold.json b/sub-05/ses-024/func/sub-05_ses-024_task-s04e13b_bold.json deleted file mode 100644 index f19c417c425..00000000000 --- a/sub-05/ses-024/func/sub-05_ses-024_task-s04e13b_bold.json +++ /dev/null @@ -1,168 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "19:29:18.840000", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190902", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": "167006", - "DwellTime": 2.1e-06, - "EchoTime": 0.037, - "EchoTrainLength": 104, - "EffectiveEchoSpacing": 0.000560011, - "FlipAngle": 52, - "ImageComments": "Unaliased_MB4_PE3_LB", - "ImageOrientationPatientDICOM": [0.999522, -0.0307155, -0.00352559, 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a/sub-05/ses-024/func/sub-05_ses-024_task-s04e13b_sbref.json +++ /dev/null @@ -1,160 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "19:29:8.410000", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190902", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": "167006", - "DwellTime": 2.1e-06, - "EchoTime": 0.037, - "EchoTrainLength": 104, - "EffectiveEchoSpacing": 0.000560011, - "FlipAngle": 52, - "ImageComments": "Single-band_reference", - "ImageOrientationPatientDICOM": [0.999522, -0.0307155, -0.00352559, 0.0273954, 0.932746, -0.359493], - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "ND", - "MOSAIC" -], - "ImagingFrequency": 123.259, - "InPlanePhaseEncodingDirectionDICOM": "COL", - "InstitutionAddress": 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-../../../.git/annex/objects/7X/MP/SHA256E-s1080207--61dbb9cab0d3827aacb2d6eeab9a9eceb5814efb06eb7ba65a97e6bdba33d277.nii.gz/SHA256E-s1080207--61dbb9cab0d3827aacb2d6eeab9a9eceb5814efb06eb7ba65a97e6bdba33d277.nii.gz \ No newline at end of file diff --git a/sub-05/ses-024/sub-05_ses-024_scans.tsv b/sub-05/ses-024/sub-05_ses-024_scans.tsv index 70cf8c9cb86..807f993bf9f 120000 --- a/sub-05/ses-024/sub-05_ses-024_scans.tsv +++ b/sub-05/ses-024/sub-05_ses-024_scans.tsv @@ -1 +1 @@ -../../.git/annex/objects/Q7/p6/SHA256E-s2152--f94bc6dbee72d64e51ae4e73725020e413f126a87919d451f81f4c05c270b26d.tsv/SHA256E-s2152--f94bc6dbee72d64e51ae4e73725020e413f126a87919d451f81f4c05c270b26d.tsv \ No newline at end of file +../../.git/annex/objects/vm/F6/SHA256E-s1979--24321148d49348628131ee7a3ad02b8b68fdf6470aa9855cbfa990a1ffe90f19.tsv/SHA256E-s1979--24321148d49348628131ee7a3ad02b8b68fdf6470aa9855cbfa990a1ffe90f19.tsv \ No newline at end of file diff --git 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-../../../.git/annex/objects/w3/mf/SHA256E-s490024134--0c26688589a5512f3297842d060bf6b1d61020dbc07ddaf0e75af514cc3b24d1.nii.gz/SHA256E-s490024134--0c26688589a5512f3297842d060bf6b1d61020dbc07ddaf0e75af514cc3b24d1.nii.gz \ No newline at end of file diff --git a/sub-05/ses-030/func/sub-05_ses-030_task-s05e06a_sbref.json b/sub-05/ses-030/func/sub-05_ses-030_task-s05e06a_sbref.json deleted file mode 100644 index 2471b6ead48..00000000000 --- a/sub-05/ses-030/func/sub-05_ses-030_task-s05e06a_sbref.json +++ /dev/null @@ -1,164 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "17:17:39.145000", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilCombinationMethod": "Sum of Squares", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20211006", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": "167006", - 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"WindowCenter": 12786.0, - "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 28276.0, - "dBdt": 0.0}, - "slices": {} - } -} \ No newline at end of file diff --git a/sub-05/ses-030/func/sub-05_ses-030_task-s05e06a_sbref.nii.gz b/sub-05/ses-030/func/sub-05_ses-030_task-s05e06a_sbref.nii.gz deleted file mode 120000 index 35587066ad1..00000000000 --- a/sub-05/ses-030/func/sub-05_ses-030_task-s05e06a_sbref.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/7x/wv/SHA256E-s1101103--5cf80852def1e847bee6dc206610c9153cce0721ab4b199447063aa7940d4aba.nii.gz/SHA256E-s1101103--5cf80852def1e847bee6dc206610c9153cce0721ab4b199447063aa7940d4aba.nii.gz \ No newline at end of file diff --git a/sub-05/ses-030/func/sub-05_ses-030_task-s05e06b_bold.json b/sub-05/ses-030/func/sub-05_ses-030_task-s05e06b_bold.json deleted file mode 100644 index 7db590c1376..00000000000 --- a/sub-05/ses-030/func/sub-05_ses-030_task-s05e06b_bold.json +++ /dev/null @@ -1,172 +0,0 @@ -{ - 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[104, 0, 0, 104], - "AcquisitionNumber": 1, - "AcquisitionTime": "174129.952500", - "AngioFlag": "N", - "BitsAllocated": 16, - "BitsStored": 16, - "BodyPartExamined": "BRAIN", - "Columns": 832, - "ContentTime": "174254.866000", - "EchoNumbers": 1, - "EchoTime": 37.0, - "EchoTrainLength": 104, - "FlipAngle": 52.0, - "HighBit": 15, - "ImageOrientationPatient": [0.9981032681447, -0.0600134016435, -0.0137207048672, 0.05126039761583, 0.9336046916839, -0.3546190227583], - "ImagePositionPatient": [-872.39956496176, -751.46439740539, 282.17130368348], - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "ND", - "MOSAIC" -], - "ImagedNucleus": "1H", - "ImagingFrequency": 123.258867, - "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "174254.866000", - "InstanceNumber": 1, - "LargestImagePixelValue": 65535, - "MRAcquisitionType": "2D", - "MagneticFieldStrength": 3.0, - "Manufacturer": "SIEMENS", - "ManufacturerModelName": "Prisma_fit", - "Modality": "MR", - "NumberOfAverages": 1.0, - "NumberOfPhaseEncodingSteps": 104, - "PercentPhaseFieldOfView": 100.0, - "PercentSampling": 100.0, - "PerformedProcedureStepStartTime": "165831.976000", - "PhotometricInterpretation": "MONOCHROME2", - "PixelBandwidth": 2290.0, - "PixelRepresentation": 0, - "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-friends-s05e06b", - "RepetitionTime": 1490.0, - "Rows": 832, - "SAR": 0.03432449574578, - "SamplesPerPixel": 1, - "ScanOptions": "FS", - "ScanningSequence": "EP", - "SequenceName": "epfid2d1_104", - "SequenceVariant": [ - "SK", - "SS" -], - "SeriesDescription": "func_task-friends-s05e06b_SBRef", - "SeriesNumber": 12, - "SeriesTime": "174254.862000", - "SliceLocation": -31.386268755683, - "SliceThickness": 2.0, - "SmallestImagePixelValue": 0, - "SoftwareVersions": "syngo MR E11", - "SpacingBetweenSlices": 2.0000000730255, - "SpecificCharacterSet": "ISO_IR 100", - "StudyID": "1", - "StudyTime": "165831.881000", - "TransmitCoilName": "Body", - "VariableFlipAngleFlag": "N", - "WindowCenter": 12471.0, - "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 27293.0, - "dBdt": 0.0}, - "slices": {} - } -} \ No newline at end of file diff --git a/sub-05/ses-030/func/sub-05_ses-030_task-s05e06b_sbref.nii.gz b/sub-05/ses-030/func/sub-05_ses-030_task-s05e06b_sbref.nii.gz deleted file mode 120000 index ca60e465139..00000000000 --- a/sub-05/ses-030/func/sub-05_ses-030_task-s05e06b_sbref.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/XP/Fz/SHA256E-s1100165--0a247b70c1748523e9d7a927d2468f588bba258d4e26e8685bd5869991463d74.nii.gz/SHA256E-s1100165--0a247b70c1748523e9d7a927d2468f588bba258d4e26e8685bd5869991463d74.nii.gz \ No newline at end of file diff --git a/sub-05/ses-030/func/sub-05_ses-030_task-s05e06b_sbref__dup-01.json b/sub-05/ses-030/func/sub-05_ses-030_task-s05e06b_sbref__dup-01.json deleted file mode 100644 index b2d5325a0b6..00000000000 --- a/sub-05/ses-030/func/sub-05_ses-030_task-s05e06b_sbref__dup-01.json +++ /dev/null @@ -1,164 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "17:39:27.507500", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilCombinationMethod": "Sum of Squares", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20211006", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": "167006", - "DwellTime": 2.1e-06, - "EchoTime": 0.037, - "EchoTrainLength": 104, - "EffectiveEchoSpacing": 0.000560011, - "FlipAngle": 52, - "HeudiconvVersion": "0.5.3.post569+g418601f", - "ImageComments": "Single-band reference", - "ImageOrientationPatientDICOM": [0.998103, -0.0600134, -0.0137207, 0.0512604, 0.933605, -0.354619], - "ImageOrientationText": "Tra>Cor(-20.7)>Sag(-2.0)", - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "ND", - "MOSAIC" -], - "ImagingFrequency": 123.259, - "InPlanePhaseEncodingDirectionDICOM": "COL", - "InstitutionAddress": "Chemin Queen-Mary 4565,Montreal,District,CA,H3W 1W5", - "InstitutionName": "IUGM", - "InstitutionalDepartmentName": "Department", - "MRAcquisitionType": "2D", - "MagneticFieldStrength": 3, - "Manufacturer": "Siemens", - "ManufacturersModelName": "Prisma_fit", - "MatrixCoilMode": "SENSE", - "Modality": "MR", - "PartialFourier": 1, - "PatientPosition": "HFS", - "PercentPhaseFOV": 100, - "PercentSampling": 100, - "PhaseEncodingDirection": "j", - "PhaseEncodingSteps": 104, - "PhaseResolution": 1, - "PixelBandwidth": 2290, - "ProcedureStepDescription": "video^friends", - "ProtocolName": "func_task-friends-s05e06b", - "PulseSequenceDetails": "%CustomerSeq%\\cmrr_mbep2d_bold", - "ReceiveCoilActiveElements": "HC1-7;NC1,2", - "ReceiveCoilName": "HeadNeck_64", - "ReconMatrixPE": 104, - "RepetitionTime": 1.49, - "SAR": 0.0343245, - "ScanOptions": "FS", - "ScanningSequence": "EP", - "SequenceName": "epfid2d1_104", - "SequenceVariant": "SK\\SS", - "SeriesDescription": "func_task-friends-s05e06b_SBRef", - "SeriesNumber": 10, - "ShimSetting": [618, -7278, -8810, 483, 30, -388, 58, 30], - "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.295, 0.3925, 0.49, 0.5875, 0.685, 0.785, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.3125, 4.41, 4.5075, 4.605, 4.7025, 4.8025, 4.9, 4.9975, 5.095, 5.1925, 5.2925, 5.39, 5.4875, 5.585, 5.6825, 5.7825], - "SoftwareVersions": "syngo MR E11", - "SpacingBetweenSlices": 2, - "StationName": "MRC35049", - "TaskName": "s05e06b", - "TotalReadoutTime": 0.0576811, - "TxRefAmp": 235.426, - "WipMemBlock": "0826605b-f062-4dde-badc-c03c333094b0||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", - "dcmmeta_affine": [ - [-1.996206521987915, 0.10252079367637634, -0.06818322092294693, 97.9031753540039], - [0.12002680450677872, 1.8672094345092773, -0.706486165523529, -76.83262634277344], - [-0.02744141034781933, 0.7092380523681641, 1.869820475578308, -59.03153610229492], - [0.0, 0.0, 0.0, 1.0] -], - "dcmmeta_reorient_transform": [ - [0.0, -1.0, 0.0, 103.0], - [1.0, 0.0, 0.0, 0.0], - [0.0, 0.0, 1.0, 0.0], - [0.0, 0.0, 0.0, 1.0] -], - "dcmmeta_shape": [104, 104, 60], - "dcmmeta_slice_dim": 2, - "dcmmeta_version": 0.6, - "global": { - "const": { - "AcquisitionMatrix": [104, 0, 0, 104], - "AcquisitionNumber": 1, - "AcquisitionTime": "173927.507500", - "AngioFlag": "N", - "BitsAllocated": 16, - "BitsStored": 16, - "BodyPartExamined": "BRAIN", - "Columns": 832, - "ContentTime": "174040.186000", - "EchoNumbers": 1, - "EchoTime": 37.0, - "EchoTrainLength": 104, - "FlipAngle": 52.0, - "HighBit": 15, - "ImageOrientationPatient": [0.9981032681447, -0.0600134016435, -0.0137207048672, 0.05126039761583, 0.9336046916839, -0.3546190227583], - "ImagePositionPatient": [-872.39956496176, -751.46439740539, 282.17130368348], - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "ND", - "MOSAIC" -], - "ImagedNucleus": "1H", - "ImagingFrequency": 123.258871, - "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "174040.186000", - "InstanceNumber": 1, - "LargestImagePixelValue": 65535, - "MRAcquisitionType": "2D", - "MagneticFieldStrength": 3.0, - "Manufacturer": "SIEMENS", - "ManufacturerModelName": "Prisma_fit", - "Modality": "MR", - "NumberOfAverages": 1.0, - "NumberOfPhaseEncodingSteps": 104, - "PercentPhaseFieldOfView": 100.0, - "PercentSampling": 100.0, - "PerformedProcedureStepStartTime": "165831.976000", - "PhotometricInterpretation": "MONOCHROME2", - "PixelBandwidth": 2290.0, - "PixelRepresentation": 0, - "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-friends-s05e06b", - "RepetitionTime": 1490.0, - "Rows": 832, - "SAR": 0.03432449574578, - "SamplesPerPixel": 1, - "ScanOptions": "FS", - "ScanningSequence": "EP", - "SequenceName": "epfid2d1_104", - "SequenceVariant": [ - "SK", - "SS" -], - "SeriesDescription": "func_task-friends-s05e06b_SBRef", - "SeriesNumber": 10, - "SeriesTime": "174040.182000", - "SliceLocation": -31.386268755683, - "SliceThickness": 2.0, - "SmallestImagePixelValue": 0, - "SoftwareVersions": "syngo MR E11", - "SpacingBetweenSlices": 2.0000000730255, - "SpecificCharacterSet": "ISO_IR 100", - "StudyID": "1", - "StudyTime": "165831.881000", - "TransmitCoilName": "Body", - "VariableFlipAngleFlag": "N", - "WindowCenter": 12671.0, - "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 27940.0, - "dBdt": 0.0}, - "slices": {} - } -} \ No newline at end of file diff --git a/sub-05/ses-030/func/sub-05_ses-030_task-s05e06b_sbref__dup-01.nii.gz b/sub-05/ses-030/func/sub-05_ses-030_task-s05e06b_sbref__dup-01.nii.gz deleted file mode 120000 index 7f40cfa139a..00000000000 --- a/sub-05/ses-030/func/sub-05_ses-030_task-s05e06b_sbref__dup-01.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/Zj/Fq/SHA256E-s1102001--651f65e1ead0c2f38c013afde8815e9dda330a41a18c089d0c4d6a1c4e98b137.nii.gz/SHA256E-s1102001--651f65e1ead0c2f38c013afde8815e9dda330a41a18c089d0c4d6a1c4e98b137.nii.gz \ No newline at end of file diff --git a/sub-05/ses-030/sub-05_ses-030_scans.tsv b/sub-05/ses-030/sub-05_ses-030_scans.tsv index 032c34bc57b..02d3dd2d197 120000 --- a/sub-05/ses-030/sub-05_ses-030_scans.tsv +++ b/sub-05/ses-030/sub-05_ses-030_scans.tsv @@ -1 +1 @@ -../../.git/annex/objects/3z/fq/SHA256E-s2469--59260bd945914fc5bda7669c2c8566a8704f063cc1e710d895d13dd5c5f89389.tsv/SHA256E-s2469--59260bd945914fc5bda7669c2c8566a8704f063cc1e710d895d13dd5c5f89389.tsv \ No newline at end of file +../../.git/annex/objects/Xp/8F/SHA256E-s1934--f8e515142e97708f5bcacf65acec5fdb416de4dff1f0e9c2568113b1e87551bb.tsv/SHA256E-s1934--f8e515142e97708f5bcacf65acec5fdb416de4dff1f0e9c2568113b1e87551bb.tsv \ No newline at end of file diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e02a_bold.json b/sub-06/ses-001/func/sub-06_ses-001_task-s01e02a_bold.json index 6d22fe94e0b..1de47a10396 100644 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e02a_bold.json +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e02a_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "15:34:4.755000", + "AcquisitionTime": "13:21:11.185000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -17,7 +17,7 @@ "EffectiveEchoSpacing": 0.000560011, "FlipAngle": 52, "ImageComments": "Unaliased_MB4_PE3_LB", - "ImageOrientationPatientDICOM": [0.998524, -0.050373, 0.0203055, 0.054253, 0.907735, -0.416022], + "ImageOrientationPatientDICOM": [0.998754, -0.0492901, 0.00781196, 0.0488472, 0.933464, -0.35533], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -45,33 +45,33 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e02a", + "ProtocolName": "func_task-s01e01a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0300104, + "SAR": 0.0267942, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e02a", - "SeriesNumber": 44, - "ShimSetting": [633, -7281, -8855, 570, 42, -302, -25, -17], + "SeriesDescription": "func_task-s01e01a", + "SeriesNumber": 8, + "ShimSetting": [633, -7264, -8826, 607, 41, -258, -104, 4], "SliceThickness": 2, - "SliceTiming": [0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875], + "SliceTiming": [0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, - "TxRefAmp": 227.312, - "WipMemBlock": "e8c16270-5ff3-41fc-8190-d8851473f656||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "TxRefAmp": 218.175, + "WipMemBlock": "796af6bf-5cc3-422a-92e4-ceadafa0e39b||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", 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+../../../.git/annex/objects/8K/px/SHA256E-s504798775--39eddfd02f906c938ce534e850c9f3b2c4b791f9109066f5d015857fdea59f5a.nii.gz/SHA256E-s504798775--39eddfd02f906c938ce534e850c9f3b2c4b791f9109066f5d015857fdea59f5a.nii.gz \ No newline at end of file diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e02a_sbref.json b/sub-06/ses-001/func/sub-06_ses-001_task-s01e02a_sbref.json index 36dc28df6f2..9846a67c747 100644 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e02a_sbref.json +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e02a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "15:33:54.325000", + "AcquisitionTime": "13:21:0.755000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -17,7 +17,7 @@ "EffectiveEchoSpacing": 0.000560011, "FlipAngle": 52, "ImageComments": "Single-band_reference", - "ImageOrientationPatientDICOM": [0.998524, -0.050373, 0.0203055, 0.054253, 0.907735, -0.416022], + "ImageOrientationPatientDICOM": [0.998754, -0.0492901, 0.00781196, 0.0488472, 0.933464, -0.35533], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -43,33 +43,33 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e02a", + "ProtocolName": "func_task-s01e01a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0300104, + "SAR": 0.0267942, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e02a_SBRef", - "SeriesNumber": 43, - "ShimSetting": [633, -7281, -8855, 570, 42, -302, -25, -17], + "SeriesDescription": "func_task-s01e01a_SBRef", + "SeriesNumber": 7, + "ShimSetting": [633, -7264, -8826, 607, 41, -258, -104, 4], "SliceThickness": 2, - "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 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227.312, - "WipMemBlock": "e8c16270-5ff3-41fc-8190-d8851473f656||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "TxRefAmp": 218.175, + "WipMemBlock": "796af6bf-5cc3-422a-92e4-ceadafa0e39b||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ - [-1.997048020362854, 0.10850591957569122, -0.005048569291830063, 97.02053833007812], - [0.10074608027935028, 1.815469741821289, -0.8330186009407043, -72.95211791992188], - [0.040610965341329575, 0.8320434093475342, 1.81825590133667, -77.89495849609375], + [-1.997507929801941, 0.09769442677497864, -0.020444201305508614, 97.49701690673828], + [0.09858021885156631, 1.8669270277023315, -0.7105386853218079, -73.05086517333984], + [0.015623918734490871, 0.710660994052887, 1.8694162368774414, -68.10543060302734], [0.0, 0.0, 0.0, 1.0] ], "dcmmeta_reorient_transform": [ @@ -85,20 +85,20 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "153354.325000", + "AcquisitionTime": "132100.755000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "153538.593000", + "ContentTime": "132238.592000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, "FlipAngle": 52.0, "HighBit": 15, - "ImageOrientationPatient": [0.99852403288137, -0.0503730399807, 0.02030548205354, 0.05425296070483, 0.90773484665606, -0.416021711478], - "ImagePositionPatient": [-874.61830220582, -738.20065257898, 295.88693056057], + "ImageOrientationPatient": [0.99875395294044, -0.0492901083151, 0.00781195930131, 0.04884721235583, 0.93346353913251, -0.3553305094631], + "ImagePositionPatient": [-870.21319250146, -762.9208839176, 258.08615547529], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259377, + "ImagingFrequency": 123.259339, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "153538.593000", + "InstanceCreationTime": "132238.592000", "InstanceNumber": 1, - "LargestImagePixelValue": 58611, + "LargestImagePixelValue": 62702, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e02a", + "ProtocolName": "func_task-s01e01a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03001035865439, + "SAR": 0.02679424747818, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,22 +138,22 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e02a_SBRef", - "SeriesNumber": 43, - "SeriesTime": "153538.589000", - "SliceLocation": -40.676152189026, + "SeriesDescription": "func_task-s01e01a_SBRef", + "SeriesNumber": 7, + "SeriesTime": "132238.588000", + "SliceLocation": -38.702591950532, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, "SoftwareVersions": "syngo MR E11", - "SpacingBetweenSlices": 1.9999999671031, + "SpacingBetweenSlices": 2.0000000188839, "SpecificCharacterSet": "ISO_IR 100", "StudyID": "1", "StudyTime": "130237.300000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12043.0, - "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 25996.0, + "WindowCenter": 10641.0, + "WindowCenterWidthExplanation": "WINDOW1", + "WindowWidth": 24970.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e02a_sbref.nii.gz b/sub-06/ses-001/func/sub-06_ses-001_task-s01e02a_sbref.nii.gz index 21978efcb80..f3be8b8e7b0 120000 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e02a_sbref.nii.gz +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e02a_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/1Q/Xg/SHA256E-s1089924--69c28f71f867651653277720e2f715b1216ab6bf41e043607eb3046cd976e072.nii.gz/SHA256E-s1089924--69c28f71f867651653277720e2f715b1216ab6bf41e043607eb3046cd976e072.nii.gz \ No newline at end of file +../../../.git/annex/objects/FF/7p/SHA256E-s1085601--d5490d973aa4ee7e00c5755dd310f54d1a6a78e6b697f4f288dcaa5bb2fb6402.nii.gz/SHA256E-s1085601--d5490d973aa4ee7e00c5755dd310f54d1a6a78e6b697f4f288dcaa5bb2fb6402.nii.gz \ No newline at end of file diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e02b_bold.json b/sub-06/ses-001/func/sub-06_ses-001_task-s01e02b_bold.json index 88f8ba01d8f..9d9cce19d7a 100644 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e02b_bold.json +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e02b_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "15:46:30.850000", + "AcquisitionTime": "13:33:37.085000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -17,7 +17,7 @@ "EffectiveEchoSpacing": 0.000560011, "FlipAngle": 52, "ImageComments": "Unaliased_MB4_PE3_LB", - "ImageOrientationPatientDICOM": [0.998524, -0.050373, 0.0203055, 0.054253, 0.907735, -0.416022], + "ImageOrientationPatientDICOM": [0.998754, -0.0492901, 0.00781196, 0.0488472, 0.933464, -0.35533], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -45,33 +45,33 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e02b", + "ProtocolName": "func_task-s01e01b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0300104, + "SAR": 0.0267942, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e02b", - "SeriesNumber": 46, - "ShimSetting": [633, -7281, -8855, 570, 42, -302, -25, -17], + "SeriesDescription": "func_task-s01e01b", + "SeriesNumber": 10, + "ShimSetting": [633, -7264, -8826, 607, 41, -258, -104, 4], "SliceThickness": 2, - "SliceTiming": [0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685], + "SliceTiming": [0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.275, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.275, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.275, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.275, 0.5875, 1.3725, 0.685], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, - "TxRefAmp": 227.312, - "WipMemBlock": "093f8dcc-cf41-4a9c-bdde-6d8475ec9ed3||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "TxRefAmp": 218.175, + "WipMemBlock": "583bf462-828f-4273-865a-d678378c4062||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ - [-1.997048020362854, 0.10850591957569122, -0.005048569291830063, 97.02053833007812], - [0.10074608027935028, 1.815469741821289, -0.8330186009407043, -72.95211791992188], - [0.040610965341329575, 0.8320434093475342, 1.81825590133667, -77.89495849609375], + [-1.997507929801941, 0.09769442677497864, -0.020444201305508614, 97.49701690673828], + [0.09858021885156631, 1.8669270277023315, -0.7105386853218079, -73.05086517333984], + [0.015623918734490871, 0.710660994052887, 1.8694162368774414, -68.10543060302734], [0.0, 0.0, 0.0, 1.0] ], "dcmmeta_reorient_transform": [ @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 472], + "dcmmeta_shape": [104, 104, 60, 482], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -96,8 +96,8 @@ "EchoTrainLength": 104, "FlipAngle": 52.0, "HighBit": 15, - "ImageOrientationPatient": [0.99852403288137, -0.0503730399807, 0.02030548205354, 0.05425296070483, 0.90773484665606, -0.416021711478], - "ImagePositionPatient": [-874.61830220582, -738.20065257898, 295.88693056057], + "ImageOrientationPatient": [0.99875395294044, -0.0492901083151, 0.00781195930131, 0.04884721235583, 0.93346353913251, -0.3553305094631], + "ImagePositionPatient": [-870.21319250146, -762.9208839176, 258.08615547529], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259381, + "ImagingFrequency": 123.259346, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e02b", + "ProtocolName": "func_task-s01e01b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03001035865439, + "SAR": 0.02679424747818, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,33 +135,516 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e02b", - "SeriesNumber": 46, - "SeriesTime": "154753.274000", - "SliceLocation": -40.676152189026, + "SeriesDescription": "func_task-s01e01b", + "SeriesNumber": 10, + "SeriesTime": "133453.264000", + "SliceLocation": -38.702591950532, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, "SoftwareVersions": "syngo MR E11", - "SpacingBetweenSlices": 1.9999999671031, + "SpacingBetweenSlices": 2.0000000188839, "SpecificCharacterSet": "ISO_IR 100", "StudyID": "1", "StudyTime": "130237.300000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenterWidthExplanation": "Algo1", "dBdt": 0.0}, "slices": {} }, "time": { "samples": { - "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 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a/sub-06/ses-001/func/sub-06_ses-001_task-s01e02b_bold.nii.gz b/sub-06/ses-001/func/sub-06_ses-001_task-s01e02b_bold.nii.gz index 5343ed1967c..853ea75ecfa 120000 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e02b_bold.nii.gz +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e02b_bold.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/xF/xq/SHA256E-s496465016--b95f6ce22a396b2620414d6e41c7c58c94fc1077f6dda56ab3773f9a588dae1d.nii.gz/SHA256E-s496465016--b95f6ce22a396b2620414d6e41c7c58c94fc1077f6dda56ab3773f9a588dae1d.nii.gz \ No newline at end of file +../../../.git/annex/objects/Jv/6Q/SHA256E-s505976232--51aa8a78e1d8a37ce0814dda19dd58de4e49371338051eb11abf4fc52b069623.nii.gz/SHA256E-s505976232--51aa8a78e1d8a37ce0814dda19dd58de4e49371338051eb11abf4fc52b069623.nii.gz \ No newline at end of file diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e02b_sbref.json b/sub-06/ses-001/func/sub-06_ses-001_task-s01e02b_sbref.json index aecb9cc2f02..5aabebd3872 100644 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e02b_sbref.json +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e02b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "15:46:20.420000", + "AcquisitionTime": "13:33:26.655000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -17,7 +17,7 @@ "EffectiveEchoSpacing": 0.000560011, "FlipAngle": 52, "ImageComments": "Single-band_reference", - "ImageOrientationPatientDICOM": [0.998524, -0.050373, 0.0203055, 0.054253, 0.907735, -0.416022], + "ImageOrientationPatientDICOM": [0.998754, -0.0492901, 0.00781196, 0.0488472, 0.933464, -0.35533], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -43,33 +43,33 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e02b", + "ProtocolName": "func_task-s01e01b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0300104, + "SAR": 0.0267942, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e02b_SBRef", - "SeriesNumber": 45, - "ShimSetting": [633, -7281, -8855, 570, 42, -302, -25, -17], + "SeriesDescription": "func_task-s01e01b_SBRef", + "SeriesNumber": 9, + "ShimSetting": [633, -7264, -8826, 607, 41, -258, -104, 4], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.3925, 0.49, 0.5875, 0.685, 0.7825, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.31, 4.41, 4.5075, 4.605, 4.7025, 4.8, 4.9, 4.9975, 5.095, 5.1925, 5.29, 5.39, 5.4875, 5.585, 5.6825, 5.78], + "SliceTiming": [0, 0.0975, 0.195, 0.295, 0.3925, 0.49, 0.5875, 0.685, 0.785, 0.8825, 0.98, 1.0775, 1.175, 1.275, 1.3725, 1.47, 1.5675, 1.665, 1.765, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.3125, 4.41, 4.5075, 4.605, 4.7025, 4.8025, 4.9, 4.9975, 5.095, 5.1925, 5.2925, 5.39, 5.4875, 5.585, 5.6825, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, - "TxRefAmp": 227.312, - "WipMemBlock": "093f8dcc-cf41-4a9c-bdde-6d8475ec9ed3||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "TxRefAmp": 218.175, + "WipMemBlock": "583bf462-828f-4273-865a-d678378c4062||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ - [-1.997048020362854, 0.10850591957569122, -0.005048569291830063, 97.02053833007812], - [0.10074608027935028, 1.815469741821289, -0.8330186009407043, -72.95211791992188], - [0.040610965341329575, 0.8320434093475342, 1.81825590133667, -77.89495849609375], + [-1.997507929801941, 0.09769442677497864, -0.020444201305508614, 97.49701690673828], + [0.09858021885156631, 1.8669270277023315, -0.7105386853218079, -73.05086517333984], + [0.015623918734490871, 0.710660994052887, 1.8694162368774414, -68.10543060302734], [0.0, 0.0, 0.0, 1.0] ], "dcmmeta_reorient_transform": [ @@ -85,20 +85,20 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "154620.420000", + "AcquisitionTime": "133326.655000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "154753.240000", + "ContentTime": "133453.239000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, "FlipAngle": 52.0, "HighBit": 15, - "ImageOrientationPatient": [0.99852403288137, -0.0503730399807, 0.02030548205354, 0.05425296070483, 0.90773484665606, -0.416021711478], - "ImagePositionPatient": [-874.61830220582, -738.20065257898, 295.88693056057], + "ImageOrientationPatient": [0.99875395294044, -0.0492901083151, 0.00781195930131, 0.04884721235583, 0.93346353913251, -0.3553305094631], + "ImagePositionPatient": [-870.21319250146, -762.9208839176, 258.08615547529], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259381, + "ImagingFrequency": 123.259346, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "154753.240000", + "InstanceCreationTime": "133453.239000", "InstanceNumber": 1, - "LargestImagePixelValue": 61225, + "LargestImagePixelValue": 56174, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e02b", + "ProtocolName": "func_task-s01e01b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03001035865439, + "SAR": 0.02679424747818, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,22 +138,22 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e02b_SBRef", - "SeriesNumber": 45, - "SeriesTime": "154753.236000", - "SliceLocation": -40.676152189026, + "SeriesDescription": "func_task-s01e01b_SBRef", + "SeriesNumber": 9, + "SeriesTime": "133453.235000", + "SliceLocation": -38.702591950532, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, "SoftwareVersions": "syngo MR E11", - "SpacingBetweenSlices": 1.9999999671031, + "SpacingBetweenSlices": 2.0000000188839, "SpecificCharacterSet": "ISO_IR 100", "StudyID": "1", "StudyTime": "130237.300000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12131.0, + "WindowCenter": 11857.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 26253.0, + "WindowWidth": 25541.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e02b_sbref.nii.gz b/sub-06/ses-001/func/sub-06_ses-001_task-s01e02b_sbref.nii.gz index 87693110fca..90294a18d2d 120000 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e02b_sbref.nii.gz +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e02b_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/W6/6F/SHA256E-s1089908--bdb83822e01c11df7b2f8ff908e5970c1e83e407e89c337a665385f2fda5b7b7.nii.gz/SHA256E-s1089908--bdb83822e01c11df7b2f8ff908e5970c1e83e407e89c337a665385f2fda5b7b7.nii.gz \ No newline at end of file +../../../.git/annex/objects/KV/8j/SHA256E-s1087359--27886afb00a991ec2e794012a3624d3b264ba1f5c0adfae3c618925b295af4fb.nii.gz/SHA256E-s1087359--27886afb00a991ec2e794012a3624d3b264ba1f5c0adfae3c618925b295af4fb.nii.gz \ No newline at end of file diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e03a_bold.json b/sub-06/ses-001/func/sub-06_ses-001_task-s01e03a_bold.json index 14d4dca80ba..6d22fe94e0b 100644 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e03a_bold.json +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e03a_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "14:02:2.220000", + "AcquisitionTime": "15:34:4.755000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -17,7 +17,7 @@ "EffectiveEchoSpacing": 0.000560011, "FlipAngle": 52, "ImageComments": "Unaliased_MB4_PE3_LB", - "ImageOrientationPatientDICOM": [0.998541, -0.0526637, 0.0119296, 0.0537295, 0.947024, -0.316636], + "ImageOrientationPatientDICOM": [0.998524, -0.050373, 0.0203055, 0.054253, 0.907735, -0.416022], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -45,33 +45,33 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e03a", + "ProtocolName": "func_task-s01e02a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0267988, + "SAR": 0.0300104, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e03a", - "SeriesNumber": 20, - "ShimSetting": [632, -7263, -8812, 683, 34, -266, -31, -7], + "SeriesDescription": "func_task-s01e02a", + "SeriesNumber": 44, + "ShimSetting": [633, -7281, -8855, 570, 42, -302, -25, -17], "SliceThickness": 2, - "SliceTiming": [0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685], + "SliceTiming": [0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, - "TxRefAmp": 218.175, - "WipMemBlock": "83dd5a1f-bb07-44c7-a6ad-f5a1d8914ce4||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "TxRefAmp": 227.312, + "WipMemBlock": "e8c16270-5ff3-41fc-8190-d8851473f656||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ - [-1.9970821142196655, 0.10745898634195328, -0.010755307972431183, 97.09142303466797], - [0.10532736778259277, 1.8940482139587402, -0.6336305141448975, 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0.05425296070483, 0.90773484665606, -0.416021711478], + "ImagePositionPatient": [-874.61830220582, -738.20065257898, 295.88693056057], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259342, + "ImagingFrequency": 123.259377, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e03a", + "ProtocolName": "func_task-s01e02a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.02679883844238, + "SAR": 0.03001035865439, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,537 +135,33 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e03a", - "SeriesNumber": 20, - "SeriesTime": "140318.623000", - "SliceLocation": -29.965794246725, + "SeriesDescription": "func_task-s01e02a", + "SeriesNumber": 44, + "SeriesTime": 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b/sub-06/ses-001/func/sub-06_ses-001_task-s01e03a_bold.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/89/m5/SHA256E-s528804826--5200f7057192eae6ce9f9013ac9a8300b610ff67eb59dad69adea99a5d44cba7.nii.gz/SHA256E-s528804826--5200f7057192eae6ce9f9013ac9a8300b610ff67eb59dad69adea99a5d44cba7.nii.gz \ No newline at end of file +../../../.git/annex/objects/Vg/z1/SHA256E-s497188778--f2d1898d476f4522f81d9bd9e6b0be5a60fbc982995de8af53fe78c3c9c2efbe.nii.gz/SHA256E-s497188778--f2d1898d476f4522f81d9bd9e6b0be5a60fbc982995de8af53fe78c3c9c2efbe.nii.gz \ No newline at end of file diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e02a_bold__dup-01.json b/sub-06/ses-001/func/sub-06_ses-001_task-s01e03a_bold__dup-01.json similarity index 100% rename from sub-06/ses-001/func/sub-06_ses-001_task-s01e02a_bold__dup-01.json rename to sub-06/ses-001/func/sub-06_ses-001_task-s01e03a_bold__dup-01.json diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e02a_bold__dup-01.nii.gz b/sub-06/ses-001/func/sub-06_ses-001_task-s01e03a_bold__dup-01.nii.gz similarity index 100% rename from sub-06/ses-001/func/sub-06_ses-001_task-s01e02a_bold__dup-01.nii.gz rename to sub-06/ses-001/func/sub-06_ses-001_task-s01e03a_bold__dup-01.nii.gz diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e03a_sbref.json b/sub-06/ses-001/func/sub-06_ses-001_task-s01e03a_sbref.json index 8539fdf1868..36dc28df6f2 100644 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e03a_sbref.json +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e03a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "14:01:51.790000", + "AcquisitionTime": "15:33:54.325000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -17,7 +17,7 @@ "EffectiveEchoSpacing": 0.000560011, "FlipAngle": 52, "ImageComments": "Single-band_reference", - "ImageOrientationPatientDICOM": [0.998541, -0.0526637, 0.0119296, 0.0537295, 0.947024, -0.316636], + "ImageOrientationPatientDICOM": [0.998524, -0.050373, 0.0203055, 0.054253, 0.907735, -0.416022], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -43,33 +43,33 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e03a", + "ProtocolName": "func_task-s01e02a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0267988, + "SAR": 0.0300104, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e03a_SBRef", - "SeriesNumber": 19, - "ShimSetting": [632, -7263, -8812, 683, 34, -266, -31, -7], + "SeriesDescription": "func_task-s01e02a_SBRef", + "SeriesNumber": 43, + "ShimSetting": [633, -7281, -8855, 570, 42, -302, -25, -17], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.45, 2.5475, 2.645, 2.7425, 2.84, 2.9375, 3.0375, 3.135, 3.2325, 3.33, 3.4275, 3.5275, 3.625, 3.7225, 3.82, 3.9175, 4.0175, 4.115, 4.2125, 4.31, 4.4075, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78], + "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.08, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, - "TxRefAmp": 218.175, - "WipMemBlock": "83dd5a1f-bb07-44c7-a6ad-f5a1d8914ce4||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "TxRefAmp": 227.312, + "WipMemBlock": "e8c16270-5ff3-41fc-8190-d8851473f656||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ - [-1.9970821142196655, 0.10745898634195328, -0.010755307972431183, 97.09142303466797], - [0.10532736778259277, 1.8940482139587402, -0.6336305141448975, -77.60442352294922], - [0.023859111592173576, 0.6332724690437317, 1.8969440460205078, -56.96523666381836], + [-1.997048020362854, 0.10850591957569122, -0.005048569291830063, 97.02053833007812], + [0.10074608027935028, 1.815469741821289, -0.8330186009407043, -72.95211791992188], + [0.040610965341329575, 0.8320434093475342, 1.81825590133667, -77.89495849609375], [0.0, 0.0, 0.0, 1.0] ], "dcmmeta_reorient_transform": [ @@ -85,20 +85,20 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "140151.790000", + "AcquisitionTime": "153354.325000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "140318.593000", + "ContentTime": "153538.593000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, "FlipAngle": 52.0, "HighBit": 15, - "ImageOrientationPatient": [0.99854104687539, -0.0526636821097, 0.01192955538366, 0.05372949412925, 0.94702409096999, -0.3166362464771], - "ImagePositionPatient": [-874.2126553367, -768.57691916223, 230.0882993719], + "ImageOrientationPatient": [0.99852403288137, -0.0503730399807, 0.02030548205354, 0.05425296070483, 0.90773484665606, -0.416021711478], + "ImagePositionPatient": [-874.61830220582, -738.20065257898, 295.88693056057], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259342, + "ImagingFrequency": 123.259377, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "140318.593000", + "InstanceCreationTime": "153538.593000", "InstanceNumber": 1, - "LargestImagePixelValue": 65162, + "LargestImagePixelValue": 58611, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e03a", + "ProtocolName": "func_task-s01e02a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.02679883844238, + "SAR": 0.03001035865439, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,22 +138,22 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e03a_SBRef", - "SeriesNumber": 19, - "SeriesTime": "140318.589000", - "SliceLocation": -29.965794246725, + "SeriesDescription": "func_task-s01e02a_SBRef", + "SeriesNumber": 43, + "SeriesTime": "153538.589000", + "SliceLocation": -40.676152189026, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, "SoftwareVersions": "syngo MR E11", - "SpacingBetweenSlices": 1.9999999523829, + "SpacingBetweenSlices": 1.9999999671031, "SpecificCharacterSet": "ISO_IR 100", "StudyID": "1", "StudyTime": "130237.300000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12265.0, + "WindowCenter": 12043.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 26668.0, + "WindowWidth": 25996.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e03a_sbref.nii.gz b/sub-06/ses-001/func/sub-06_ses-001_task-s01e03a_sbref.nii.gz index 378bd66675d..21978efcb80 120000 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e03a_sbref.nii.gz +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e03a_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/gv/fm/SHA256E-s1089072--b149c05414133eff97ac87433ad83c3f6e3bffeeb7ff68678181203a08511aec.nii.gz/SHA256E-s1089072--b149c05414133eff97ac87433ad83c3f6e3bffeeb7ff68678181203a08511aec.nii.gz \ No newline at end of file +../../../.git/annex/objects/1Q/Xg/SHA256E-s1089924--69c28f71f867651653277720e2f715b1216ab6bf41e043607eb3046cd976e072.nii.gz/SHA256E-s1089924--69c28f71f867651653277720e2f715b1216ab6bf41e043607eb3046cd976e072.nii.gz \ No newline at end of file diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e02a_sbref__dup-01.json b/sub-06/ses-001/func/sub-06_ses-001_task-s01e03a_sbref__dup-01.json similarity index 100% rename from sub-06/ses-001/func/sub-06_ses-001_task-s01e02a_sbref__dup-01.json rename to sub-06/ses-001/func/sub-06_ses-001_task-s01e03a_sbref__dup-01.json diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e02a_sbref__dup-01.nii.gz b/sub-06/ses-001/func/sub-06_ses-001_task-s01e03a_sbref__dup-01.nii.gz similarity index 100% rename from sub-06/ses-001/func/sub-06_ses-001_task-s01e02a_sbref__dup-01.nii.gz rename to sub-06/ses-001/func/sub-06_ses-001_task-s01e03a_sbref__dup-01.nii.gz diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e03b_bold.json b/sub-06/ses-001/func/sub-06_ses-001_task-s01e03b_bold.json index b425a1f2805..88f8ba01d8f 100644 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e03b_bold.json +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e03b_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "14:15:5.445000", + "AcquisitionTime": "15:46:30.850000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -17,7 +17,7 @@ "EffectiveEchoSpacing": 0.000560011, "FlipAngle": 52, "ImageComments": "Unaliased_MB4_PE3_LB", - "ImageOrientationPatientDICOM": [0.998541, -0.0526637, 0.0119296, 0.0537295, 0.947024, -0.316636], + "ImageOrientationPatientDICOM": [0.998524, -0.050373, 0.0203055, 0.054253, 0.907735, -0.416022], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -45,33 +45,33 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e03b", + "ProtocolName": "func_task-s01e02b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0267988, + "SAR": 0.0300104, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e03b", - "SeriesNumber": 22, - "ShimSetting": [632, -7263, -8812, 683, 34, -266, -31, -7], + "SeriesDescription": "func_task-s01e02b", + "SeriesNumber": 46, + "ShimSetting": [633, -7281, -8855, 570, 42, -302, -25, -17], "SliceThickness": 2, - "SliceTiming": [0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685], + "SliceTiming": [0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, - "TxRefAmp": 218.175, - "WipMemBlock": "61b71132-89e5-465f-9dff-80701c9beece||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "TxRefAmp": 227.312, + "WipMemBlock": "093f8dcc-cf41-4a9c-bdde-6d8475ec9ed3||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ - [-1.9970821142196655, 0.10745898634195328, -0.010755307972431183, 97.09142303466797], - [0.10532736778259277, 1.8940482139587402, -0.6336305141448975, -77.60442352294922], - [0.023859111592173576, 0.6332724690437317, 1.8969440460205078, -56.96523666381836], + [-1.997048020362854, 0.10850591957569122, -0.005048569291830063, 97.02053833007812], + [0.10074608027935028, 1.815469741821289, -0.8330186009407043, -72.95211791992188], + [0.040610965341329575, 0.8320434093475342, 1.81825590133667, -77.89495849609375], [0.0, 0.0, 0.0, 1.0] ], "dcmmeta_reorient_transform": [ @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 503], + "dcmmeta_shape": [104, 104, 60, 472], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -96,8 +96,8 @@ "EchoTrainLength": 104, "FlipAngle": 52.0, "HighBit": 15, - "ImageOrientationPatient": [0.99854104687539, -0.0526636821097, 0.01192955538366, 0.05372949412925, 0.94702409096999, -0.3166362464771], - "ImagePositionPatient": [-874.2126553367, -768.57691916223, 230.0882993719], + "ImageOrientationPatient": [0.99852403288137, -0.0503730399807, 0.02030548205354, 0.05425296070483, 0.90773484665606, -0.416021711478], + "ImagePositionPatient": [-874.61830220582, -738.20065257898, 295.88693056057], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259348, + "ImagingFrequency": 123.259381, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e03b", + "ProtocolName": "func_task-s01e02b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.02679883844238, + "SAR": 0.03001035865439, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,14 +135,14 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e03b", - "SeriesNumber": 22, - "SeriesTime": "141633.264000", - "SliceLocation": -29.965794246725, + "SeriesDescription": "func_task-s01e02b", + "SeriesNumber": 46, + "SeriesTime": "154753.274000", + "SliceLocation": -40.676152189026, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, "SoftwareVersions": "syngo MR E11", - "SpacingBetweenSlices": 1.9999999523829, + "SpacingBetweenSlices": 1.9999999671031, "SpecificCharacterSet": "ISO_IR 100", "StudyID": "1", "StudyTime": "130237.300000", @@ -154,14 +154,14 @@ }, "time": { "samples": { - "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 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21246.0, 21204.0, 21168.0, 21150.0, 21148.0] }, "slices": {} } diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e03b_bold.nii.gz b/sub-06/ses-001/func/sub-06_ses-001_task-s01e03b_bold.nii.gz index e9502eb2230..5343ed1967c 120000 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e03b_bold.nii.gz +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e03b_bold.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/JF/04/SHA256E-s528245787--b8dd6e6b7fbf9cd13226f9a35a7f92330b82782703d40ee6d29fb3a3b383250d.nii.gz/SHA256E-s528245787--b8dd6e6b7fbf9cd13226f9a35a7f92330b82782703d40ee6d29fb3a3b383250d.nii.gz \ No newline at end of file +../../../.git/annex/objects/xF/xq/SHA256E-s496465016--b95f6ce22a396b2620414d6e41c7c58c94fc1077f6dda56ab3773f9a588dae1d.nii.gz/SHA256E-s496465016--b95f6ce22a396b2620414d6e41c7c58c94fc1077f6dda56ab3773f9a588dae1d.nii.gz \ No newline at end of file diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e03b_sbref.json b/sub-06/ses-001/func/sub-06_ses-001_task-s01e03b_sbref.json index d6edb0ba1b8..aecb9cc2f02 100644 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e03b_sbref.json +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e03b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "14:14:55.015000", + "AcquisitionTime": "15:46:20.420000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -17,7 +17,7 @@ "EffectiveEchoSpacing": 0.000560011, "FlipAngle": 52, "ImageComments": "Single-band_reference", - "ImageOrientationPatientDICOM": [0.998541, -0.0526637, 0.0119296, 0.0537295, 0.947024, -0.316636], + "ImageOrientationPatientDICOM": [0.998524, -0.050373, 0.0203055, 0.054253, 0.907735, -0.416022], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -43,33 +43,33 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e03b", + "ProtocolName": "func_task-s01e02b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0267988, + "SAR": 0.0300104, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e03b_SBRef", - "SeriesNumber": 21, - "ShimSetting": [632, -7263, -8812, 683, 34, -266, -31, -7], + "SeriesDescription": "func_task-s01e02b_SBRef", + "SeriesNumber": 45, + "ShimSetting": [633, -7281, -8855, 570, 42, -302, -25, -17], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.4475, 2.5475, 2.645, 2.7425, 2.84, 2.9375, 3.0375, 3.135, 3.2325, 3.33, 3.4275, 3.5275, 3.625, 3.7225, 3.82, 3.9175, 4.0175, 4.115, 4.2125, 4.31, 4.4075, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78], + "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.3925, 0.49, 0.5875, 0.685, 0.7825, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.31, 4.41, 4.5075, 4.605, 4.7025, 4.8, 4.9, 4.9975, 5.095, 5.1925, 5.29, 5.39, 5.4875, 5.585, 5.6825, 5.78], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, - "TxRefAmp": 218.175, - "WipMemBlock": "61b71132-89e5-465f-9dff-80701c9beece||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "TxRefAmp": 227.312, + "WipMemBlock": "093f8dcc-cf41-4a9c-bdde-6d8475ec9ed3||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ - [-1.9970821142196655, 0.10745898634195328, -0.010755307972431183, 97.09142303466797], - [0.10532736778259277, 1.8940482139587402, -0.6336305141448975, -77.60442352294922], - [0.023859111592173576, 0.6332724690437317, 1.8969440460205078, -56.96523666381836], + [-1.997048020362854, 0.10850591957569122, -0.005048569291830063, 97.02053833007812], + [0.10074608027935028, 1.815469741821289, -0.8330186009407043, -72.95211791992188], + [0.040610965341329575, 0.8320434093475342, 1.81825590133667, -77.89495849609375], [0.0, 0.0, 0.0, 1.0] ], "dcmmeta_reorient_transform": [ @@ -85,20 +85,20 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "141455.015000", + "AcquisitionTime": "154620.420000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "141633.238000", + "ContentTime": "154753.240000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, "FlipAngle": 52.0, "HighBit": 15, - "ImageOrientationPatient": [0.99854104687539, -0.0526636821097, 0.01192955538366, 0.05372949412925, 0.94702409096999, -0.3166362464771], - "ImagePositionPatient": [-874.2126553367, -768.57691916223, 230.0882993719], + "ImageOrientationPatient": [0.99852403288137, -0.0503730399807, 0.02030548205354, 0.05425296070483, 0.90773484665606, -0.416021711478], + "ImagePositionPatient": [-874.61830220582, -738.20065257898, 295.88693056057], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259348, + "ImagingFrequency": 123.259381, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "141633.238000", + "InstanceCreationTime": "154753.240000", "InstanceNumber": 1, - "LargestImagePixelValue": 60525, + "LargestImagePixelValue": 61225, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e03b", + "ProtocolName": "func_task-s01e02b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.02679883844238, + "SAR": 0.03001035865439, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,22 +138,22 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e03b_SBRef", - "SeriesNumber": 21, - "SeriesTime": "141633.235000", - "SliceLocation": -29.965794246725, + "SeriesDescription": "func_task-s01e02b_SBRef", + "SeriesNumber": 45, + "SeriesTime": "154753.236000", + "SliceLocation": -40.676152189026, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, "SoftwareVersions": "syngo MR E11", - "SpacingBetweenSlices": 1.9999999523829, + "SpacingBetweenSlices": 1.9999999671031, "SpecificCharacterSet": "ISO_IR 100", "StudyID": "1", "StudyTime": "130237.300000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12003.0, + "WindowCenter": 12131.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 25993.0, + "WindowWidth": 26253.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e03b_sbref.nii.gz b/sub-06/ses-001/func/sub-06_ses-001_task-s01e03b_sbref.nii.gz index 2fed038c10f..87693110fca 120000 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e03b_sbref.nii.gz +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e03b_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/6Z/8X/SHA256E-s1087070--00b34aa293433b905b525457c9b2cdb39f9328d9ef68e62172695d46424a0cb5.nii.gz/SHA256E-s1087070--00b34aa293433b905b525457c9b2cdb39f9328d9ef68e62172695d46424a0cb5.nii.gz \ No newline at end of file +../../../.git/annex/objects/W6/6F/SHA256E-s1089908--bdb83822e01c11df7b2f8ff908e5970c1e83e407e89c337a665385f2fda5b7b7.nii.gz/SHA256E-s1089908--bdb83822e01c11df7b2f8ff908e5970c1e83e407e89c337a665385f2fda5b7b7.nii.gz \ No newline at end of file diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e04a_bold.json b/sub-06/ses-001/func/sub-06_ses-001_task-s01e04a_bold.json index da10218a740..14d4dca80ba 100644 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e04a_bold.json +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e04a_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "14:39:22.522500", + "AcquisitionTime": "14:02:2.220000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -17,7 +17,7 @@ "EffectiveEchoSpacing": 0.000560011, "FlipAngle": 52, "ImageComments": "Unaliased_MB4_PE3_LB", - "ImageOrientationPatientDICOM": [0.997389, -0.0694963, 0.0196273, 0.0716688, 0.91923, -0.387144], + "ImageOrientationPatientDICOM": [0.998541, -0.0526637, 0.0119296, 0.0537295, 0.947024, -0.316636], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -45,33 +45,33 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e04a", + "ProtocolName": "func_task-s01e03a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0300093, + "SAR": 0.0267988, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e04a", - "SeriesNumber": 30, - "ShimSetting": [633, -7278, -8855, 569, 34, -288, -44, -23], + "SeriesDescription": "func_task-s01e03a", + "SeriesNumber": 20, + "ShimSetting": [632, -7263, -8812, 683, 34, -266, -31, -7], "SliceThickness": 2, - "SliceTiming": [0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875], + "SliceTiming": [0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, - "TxRefAmp": 227.312, - "WipMemBlock": "8f55eb65-2520-40d1-b6bd-a7974d9b363c||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "TxRefAmp": 218.175, + "WipMemBlock": "83dd5a1f-bb07-44c7-a6ad-f5a1d8914ce4||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ - [-1.9947782754898071, 0.14333753287792206, -0.017726117745041847, 95.35079956054688], - [0.13899260759353638, 1.8384596109390259, -0.7750788927078247, -76.56263732910156], - [0.0392545722424984, 0.7742871046066284, 1.843621015548706, -76.73834228515625], + [-1.9970821142196655, 0.10745898634195328, -0.010755307972431183, 97.09142303466797], + [0.10532736778259277, 1.8940482139587402, -0.6336305141448975, -77.60442352294922], + [0.023859111592173576, 0.6332724690437317, 1.8969440460205078, -56.96523666381836], [0.0, 0.0, 0.0, 1.0] ], "dcmmeta_reorient_transform": [ @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 468], + "dcmmeta_shape": [104, 104, 60, 503], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -96,8 +96,8 @@ "EchoTrainLength": 104, "FlipAngle": 52.0, "HighBit": 15, - "ImageOrientationPatient": [0.99738910849068, -0.0694963011415, 0.0196272869194, 0.07166876905677, 0.91922981221843, -0.3871435649352], - "ImagePositionPatient": [-888.38870013904, -731.4047014278, 270.56508536238], + "ImageOrientationPatient": [0.99854104687539, -0.0526636821097, 0.01192955538366, 0.05372949412925, 0.94702409096999, -0.3166362464771], + "ImagePositionPatient": [-874.2126553367, -768.57691916223, 230.0882993719], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259372, + "ImagingFrequency": 123.259342, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e04a", + "ProtocolName": "func_task-s01e03a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03000928678979, + "SAR": 0.02679883844238, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,33 +135,537 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e04a", - "SeriesNumber": 30, - "SeriesTime": 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-../../../.git/annex/objects/ZJ/9X/SHA256E-s493095427--d5b2ad735a79e28f30e18f19a32e063d7b368954e2c5f93e6830c417a30af674.nii.gz/SHA256E-s493095427--d5b2ad735a79e28f30e18f19a32e063d7b368954e2c5f93e6830c417a30af674.nii.gz \ No newline at end of file +../../../.git/annex/objects/89/m5/SHA256E-s528804826--5200f7057192eae6ce9f9013ac9a8300b610ff67eb59dad69adea99a5d44cba7.nii.gz/SHA256E-s528804826--5200f7057192eae6ce9f9013ac9a8300b610ff67eb59dad69adea99a5d44cba7.nii.gz \ No newline at end of file diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e04a_sbref.json b/sub-06/ses-001/func/sub-06_ses-001_task-s01e04a_sbref.json index 3c56ffb8d2b..8539fdf1868 100644 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e04a_sbref.json +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e04a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "14:39:12.092500", + "AcquisitionTime": "14:01:51.790000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -17,7 +17,7 @@ "EffectiveEchoSpacing": 0.000560011, "FlipAngle": 52, "ImageComments": "Single-band_reference", - "ImageOrientationPatientDICOM": [0.997389, -0.0694963, 0.0196273, 0.0716688, 0.91923, -0.387144], + "ImageOrientationPatientDICOM": [0.998541, -0.0526637, 0.0119296, 0.0537295, 0.947024, -0.316636], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -43,33 +43,33 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e04a", + "ProtocolName": "func_task-s01e03a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0300093, + "SAR": 0.0267988, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e04a_SBRef", - "SeriesNumber": 29, - "ShimSetting": [633, -7278, -8855, 569, 34, -288, -44, -23], + "SeriesDescription": "func_task-s01e03a_SBRef", + "SeriesNumber": 19, + "ShimSetting": [632, -7263, -8812, 683, 34, -266, -31, -7], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.1975, 0.295, 0.3925, 0.49, 0.5875, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.645, 2.745, 2.8425, 2.94, 3.0375, 3.135, 3.235, 3.3325, 3.43, 3.5275, 3.625, 3.725, 3.8225, 3.92, 4.0175, 4.115, 4.215, 4.3125, 4.41, 4.5075, 4.605, 4.705, 4.8025, 4.9, 4.9975, 5.095, 5.195, 5.2925, 5.39, 5.4875, 5.585, 5.685, 5.7825], + "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.45, 2.5475, 2.645, 2.7425, 2.84, 2.9375, 3.0375, 3.135, 3.2325, 3.33, 3.4275, 3.5275, 3.625, 3.7225, 3.82, 3.9175, 4.0175, 4.115, 4.2125, 4.31, 4.4075, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, - "TxRefAmp": 227.312, - "WipMemBlock": "8f55eb65-2520-40d1-b6bd-a7974d9b363c||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "TxRefAmp": 218.175, + "WipMemBlock": "83dd5a1f-bb07-44c7-a6ad-f5a1d8914ce4||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ - [-1.9947782754898071, 0.14333753287792206, -0.017726117745041847, 95.35079956054688], - [0.13899260759353638, 1.8384596109390259, -0.7750788927078247, -76.56263732910156], - [0.0392545722424984, 0.7742871046066284, 1.843621015548706, -76.73834228515625], + [-1.9970821142196655, 0.10745898634195328, -0.010755307972431183, 97.09142303466797], + [0.10532736778259277, 1.8940482139587402, -0.6336305141448975, -77.60442352294922], + [0.023859111592173576, 0.6332724690437317, 1.8969440460205078, -56.96523666381836], [0.0, 0.0, 0.0, 1.0] ], "dcmmeta_reorient_transform": [ @@ -85,20 +85,20 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "143912.092500", + "AcquisitionTime": "140151.790000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "144056.313000", + "ContentTime": "140318.593000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, "FlipAngle": 52.0, "HighBit": 15, - "ImageOrientationPatient": [0.99738910849068, -0.0694963011415, 0.0196272869194, 0.07166876905677, 0.91922981221843, -0.3871435649352], - "ImagePositionPatient": [-888.38870013904, -731.4047014278, 270.56508536238], + "ImageOrientationPatient": [0.99854104687539, -0.0526636821097, 0.01192955538366, 0.05372949412925, 0.94702409096999, -0.3166362464771], + "ImagePositionPatient": [-874.2126553367, -768.57691916223, 230.0882993719], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259372, + "ImagingFrequency": 123.259342, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "144056.313000", + "InstanceCreationTime": "140318.593000", "InstanceNumber": 1, - "LargestImagePixelValue": 61108, + "LargestImagePixelValue": 65162, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e04a", + "ProtocolName": "func_task-s01e03a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03000928678979, + "SAR": 0.02679883844238, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,22 +138,22 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e04a_SBRef", - "SeriesNumber": 29, - "SeriesTime": "144056.309000", - "SliceLocation": -41.912267100334, + "SeriesDescription": "func_task-s01e03a_SBRef", + "SeriesNumber": 19, + "SeriesTime": "140318.589000", + "SliceLocation": -29.965794246725, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, "SoftwareVersions": "syngo MR E11", - "SpacingBetweenSlices": 2.0000000419061, + "SpacingBetweenSlices": 1.9999999523829, "SpecificCharacterSet": "ISO_IR 100", "StudyID": "1", "StudyTime": "130237.300000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12128.0, + "WindowCenter": 12265.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 26218.0, + "WindowWidth": 26668.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e04a_sbref.nii.gz b/sub-06/ses-001/func/sub-06_ses-001_task-s01e04a_sbref.nii.gz index c2c76df87fe..378bd66675d 120000 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e04a_sbref.nii.gz +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e04a_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/j1/Gw/SHA256E-s1091197--f011fd5213cfce0a2ab61494f3ec5ec1fd796ff4be62d7d05f0a69df2688873e.nii.gz/SHA256E-s1091197--f011fd5213cfce0a2ab61494f3ec5ec1fd796ff4be62d7d05f0a69df2688873e.nii.gz \ No newline at end of file +../../../.git/annex/objects/gv/fm/SHA256E-s1089072--b149c05414133eff97ac87433ad83c3f6e3bffeeb7ff68678181203a08511aec.nii.gz/SHA256E-s1089072--b149c05414133eff97ac87433ad83c3f6e3bffeeb7ff68678181203a08511aec.nii.gz \ No newline at end of file diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e04b_bold.json b/sub-06/ses-001/func/sub-06_ses-001_task-s01e04b_bold.json index 0c0550467c7..b425a1f2805 100644 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e04b_bold.json +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e04b_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "14:53:28.285000", + "AcquisitionTime": "14:15:5.445000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -17,7 +17,7 @@ "EffectiveEchoSpacing": 0.000560011, "FlipAngle": 52, "ImageComments": "Unaliased_MB4_PE3_LB", - "ImageOrientationPatientDICOM": [0.997389, -0.0694963, 0.0196273, 0.0716688, 0.91923, -0.387144], + "ImageOrientationPatientDICOM": [0.998541, -0.0526637, 0.0119296, 0.0537295, 0.947024, -0.316636], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -45,33 +45,33 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e04b", + "ProtocolName": "func_task-s01e03b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0300093, + "SAR": 0.0267988, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e04b", - "SeriesNumber": 32, - "ShimSetting": [633, -7278, -8855, 569, 34, -288, -44, -23], + "SeriesDescription": "func_task-s01e03b", + "SeriesNumber": 22, + "ShimSetting": [632, -7263, -8812, 683, 34, -266, -31, -7], "SliceThickness": 2, - "SliceTiming": [0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875], + "SliceTiming": [0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685, 0, 0.7825, 0.0975, 0.88, 0.195, 0.98, 0.2925, 1.0775, 0.39, 1.175, 0.49, 1.2725, 0.5875, 1.37, 0.685], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, - "TxRefAmp": 227.312, - "WipMemBlock": "866e5185-6963-415b-8f41-b14d8a118827||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "TxRefAmp": 218.175, + "WipMemBlock": "61b71132-89e5-465f-9dff-80701c9beece||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ - [-1.9947782754898071, 0.14333753287792206, -0.017726117745041847, 95.35079956054688], - [0.13899260759353638, 1.8384596109390259, -0.7750788927078247, -76.56263732910156], - [0.0392545722424984, 0.7742871046066284, 1.843621015548706, -76.73834228515625], + [-1.9970821142196655, 0.10745898634195328, -0.010755307972431183, 97.09142303466797], + [0.10532736778259277, 1.8940482139587402, -0.6336305141448975, -77.60442352294922], + [0.023859111592173576, 0.6332724690437317, 1.8969440460205078, -56.96523666381836], [0.0, 0.0, 0.0, 1.0] ], "dcmmeta_reorient_transform": [ @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 468], + "dcmmeta_shape": [104, 104, 60, 503], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -96,8 +96,8 @@ "EchoTrainLength": 104, "FlipAngle": 52.0, "HighBit": 15, - "ImageOrientationPatient": [0.99738910849068, -0.0694963011415, 0.0196272869194, 0.07166876905677, 0.91922981221843, -0.3871435649352], - "ImagePositionPatient": [-888.38870013904, -731.4047014278, 270.56508536238], + "ImageOrientationPatient": [0.99854104687539, -0.0526636821097, 0.01192955538366, 0.05372949412925, 0.94702409096999, -0.3166362464771], + "ImagePositionPatient": [-874.2126553367, -768.57691916223, 230.0882993719], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259378, + "ImagingFrequency": 123.259348, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e04b", + "ProtocolName": "func_task-s01e03b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03000928678979, + "SAR": 0.02679883844238, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,14 +135,14 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e04b", - "SeriesNumber": 32, - "SeriesTime": "145458.630000", - "SliceLocation": -41.912267100334, + "SeriesDescription": "func_task-s01e03b", + "SeriesNumber": 22, + "SeriesTime": "141633.264000", + "SliceLocation": -29.965794246725, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, "SoftwareVersions": "syngo MR E11", - "SpacingBetweenSlices": 2.0000000419061, + "SpacingBetweenSlices": 1.9999999523829, "SpecificCharacterSet": "ISO_IR 100", "StudyID": "1", "StudyTime": "130237.300000", @@ -154,14 +154,14 @@ }, "time": { "samples": { - "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 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newline at end of file diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e04b_sbref.json b/sub-06/ses-001/func/sub-06_ses-001_task-s01e04b_sbref.json index 2b3a93738b2..d6edb0ba1b8 100644 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e04b_sbref.json +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e04b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "14:53:17.855000", + "AcquisitionTime": "14:14:55.015000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -17,7 +17,7 @@ "EffectiveEchoSpacing": 0.000560011, "FlipAngle": 52, "ImageComments": "Single-band_reference", - "ImageOrientationPatientDICOM": [0.997389, -0.0694963, 0.0196273, 0.0716688, 0.91923, -0.387144], + "ImageOrientationPatientDICOM": [0.998541, -0.0526637, 0.0119296, 0.0537295, 0.947024, -0.316636], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -43,33 +43,33 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e04b", + "ProtocolName": "func_task-s01e03b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0300093, + "SAR": 0.0267988, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e04b_SBRef", - "SeriesNumber": 31, - "ShimSetting": [633, -7278, -8855, 569, 34, -288, -44, -23], + "SeriesDescription": "func_task-s01e03b_SBRef", + "SeriesNumber": 21, + "ShimSetting": [632, -7263, -8812, 683, 34, -266, -31, -7], "SliceThickness": 2, - "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.08, 1.1775, 1.275, 1.3725, 1.47, 1.57, 1.6675, 1.765, 1.8625, 1.96, 2.06, 2.1575, 2.255, 2.3525, 2.45, 2.55, 2.6475, 2.745, 2.8425, 2.94, 3.04, 3.1375, 3.235, 3.3325, 3.43, 3.53, 3.6275, 3.725, 3.8225, 3.92, 4.02, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825], + "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.4475, 2.5475, 2.645, 2.7425, 2.84, 2.9375, 3.0375, 3.135, 3.2325, 3.33, 3.4275, 3.5275, 3.625, 3.7225, 3.82, 3.9175, 4.0175, 4.115, 4.2125, 4.31, 4.4075, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, - "TxRefAmp": 227.312, - "WipMemBlock": "866e5185-6963-415b-8f41-b14d8a118827||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "TxRefAmp": 218.175, + "WipMemBlock": "61b71132-89e5-465f-9dff-80701c9beece||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ - [-1.9947782754898071, 0.14333753287792206, -0.017726117745041847, 95.35079956054688], - [0.13899260759353638, 1.8384596109390259, -0.7750788927078247, -76.56263732910156], - [0.0392545722424984, 0.7742871046066284, 1.843621015548706, -76.73834228515625], + [-1.9970821142196655, 0.10745898634195328, -0.010755307972431183, 97.09142303466797], + [0.10532736778259277, 1.8940482139587402, -0.6336305141448975, -77.60442352294922], + [0.023859111592173576, 0.6332724690437317, 1.8969440460205078, -56.96523666381836], [0.0, 0.0, 0.0, 1.0] ], "dcmmeta_reorient_transform": [ @@ -85,20 +85,20 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "145317.855000", + "AcquisitionTime": "141455.015000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "145458.601000", + "ContentTime": "141633.238000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, "FlipAngle": 52.0, "HighBit": 15, - "ImageOrientationPatient": [0.99738910849068, -0.0694963011415, 0.0196272869194, 0.07166876905677, 0.91922981221843, -0.3871435649352], - "ImagePositionPatient": [-888.38870013904, -731.4047014278, 270.56508536238], + "ImageOrientationPatient": [0.99854104687539, -0.0526636821097, 0.01192955538366, 0.05372949412925, 0.94702409096999, -0.3166362464771], + "ImagePositionPatient": [-874.2126553367, -768.57691916223, 230.0882993719], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259378, + "ImagingFrequency": 123.259348, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "145458.601000", + "InstanceCreationTime": "141633.238000", "InstanceNumber": 1, - "LargestImagePixelValue": 62276, + "LargestImagePixelValue": 60525, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e04b", + "ProtocolName": "func_task-s01e03b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03000928678979, + "SAR": 0.02679883844238, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,22 +138,22 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e04b_SBRef", - "SeriesNumber": 31, - "SeriesTime": "145458.596000", - "SliceLocation": -41.912267100334, + "SeriesDescription": "func_task-s01e03b_SBRef", + "SeriesNumber": 21, + "SeriesTime": "141633.235000", + "SliceLocation": -29.965794246725, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, "SoftwareVersions": "syngo MR E11", - "SpacingBetweenSlices": 2.0000000419061, + "SpacingBetweenSlices": 1.9999999523829, "SpecificCharacterSet": "ISO_IR 100", "StudyID": "1", "StudyTime": "130237.300000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12165.0, + "WindowCenter": 12003.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 26359.0, + "WindowWidth": 25993.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e04b_sbref.nii.gz b/sub-06/ses-001/func/sub-06_ses-001_task-s01e04b_sbref.nii.gz index 8e8f5d6a699..2fed038c10f 120000 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e04b_sbref.nii.gz +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e04b_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/qP/JV/SHA256E-s1091192--f17d8ab68e7b00f27f1a59dc2995fb352104cb0229076b26dd6a0761601da1bc.nii.gz/SHA256E-s1091192--f17d8ab68e7b00f27f1a59dc2995fb352104cb0229076b26dd6a0761601da1bc.nii.gz \ No newline at end of file +../../../.git/annex/objects/6Z/8X/SHA256E-s1087070--00b34aa293433b905b525457c9b2cdb39f9328d9ef68e62172695d46424a0cb5.nii.gz/SHA256E-s1087070--00b34aa293433b905b525457c9b2cdb39f9328d9ef68e62172695d46424a0cb5.nii.gz \ No newline at end of file diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e05a_bold.json b/sub-06/ses-001/func/sub-06_ses-001_task-s01e05a_bold.json index 596907765d3..da10218a740 100644 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e05a_bold.json +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e05a_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "15:05:39.082500", + "AcquisitionTime": "14:39:22.522500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -45,29 +45,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e05a", + "ProtocolName": "func_task-s01e04a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0300145, + "SAR": 0.0300093, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e05a", - "SeriesNumber": 34, + "SeriesDescription": "func_task-s01e04a", + "SeriesNumber": 30, "ShimSetting": [633, -7278, -8855, 569, 34, -288, -44, -23], "SliceThickness": 2, - "SliceTiming": [0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685], + "SliceTiming": [0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 0.8825, 0.1975, 0.98, 0.295, 1.0775, 0.3925, 1.1775, 0.49, 1.275, 0.5875, 1.3725, 0.6875, 0, 0.785, 0.0975, 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"global": { @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259378, + "ImagingFrequency": 123.259372, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e05a", + "ProtocolName": "func_task-s01e04a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03001448171654, + "SAR": 0.03000928678979, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,9 +135,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e05a", - "SeriesNumber": 34, - "SeriesTime": "150653.271000", + "SeriesDescription": "func_task-s01e04a", + "SeriesNumber": 30, + "SeriesTime": "144056.352000", "SliceLocation": -41.912267100334, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -154,14 +154,14 @@ }, "time": { "samples": { - "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 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8ea4d74a654..a8b75b90347 120000 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e05a_bold.nii.gz +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e05a_bold.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/jQ/fP/SHA256E-s514615374--1f3dcb33476dac22ed9978922c7e81a924672cd1aaefa22806c45cecc06a644d.nii.gz/SHA256E-s514615374--1f3dcb33476dac22ed9978922c7e81a924672cd1aaefa22806c45cecc06a644d.nii.gz \ No newline at end of file +../../../.git/annex/objects/ZJ/9X/SHA256E-s493095427--d5b2ad735a79e28f30e18f19a32e063d7b368954e2c5f93e6830c417a30af674.nii.gz/SHA256E-s493095427--d5b2ad735a79e28f30e18f19a32e063d7b368954e2c5f93e6830c417a30af674.nii.gz \ No newline at end of file diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e05a_sbref.json b/sub-06/ses-001/func/sub-06_ses-001_task-s01e05a_sbref.json index 073329704a2..3c56ffb8d2b 100644 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e05a_sbref.json +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e05a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "15:05:28.652500", + "AcquisitionTime": "14:39:12.092500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e05a", + "ProtocolName": "func_task-s01e04a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0300145, + "SAR": 0.0300093, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e05a_SBRef", - "SeriesNumber": 33, + "SeriesDescription": "func_task-s01e04a_SBRef", + "SeriesNumber": 29, "ShimSetting": [633, -7278, -8855, 569, 34, -288, -44, -23], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.295, 0.3925, 0.49, 0.5875, 0.685, 0.785, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.3125, 4.41, 4.5075, 4.605, 4.7025, 4.8025, 4.9, 4.9975, 5.095, 5.1925, 5.2925, 5.39, 5.4875, 5.585, 5.6825, 5.78], + "SliceTiming": [0, 0.0975, 0.1975, 0.295, 0.3925, 0.49, 0.5875, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.645, 2.745, 2.8425, 2.94, 3.0375, 3.135, 3.235, 3.3325, 3.43, 3.5275, 3.625, 3.725, 3.8225, 3.92, 4.0175, 4.115, 4.215, 4.3125, 4.41, 4.5075, 4.605, 4.705, 4.8025, 4.9, 4.9975, 5.095, 5.195, 5.2925, 5.39, 5.4875, 5.585, 5.685, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 227.312, - "WipMemBlock": "d5f36fab-69ec-468f-a3e8-ce867bcf56c0||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "8f55eb65-2520-40d1-b6bd-a7974d9b363c||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9947782754898071, 0.14333753287792206, -0.017726117745041847, 95.35079956054688], [0.13899260759353638, 1.8384596109390259, -0.7750788927078247, -76.56263732910156], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "150528.652500", + "AcquisitionTime": "143912.092500", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "150653.239000", + "ContentTime": "144056.313000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259378, + "ImagingFrequency": 123.259372, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "150653.239000", + "InstanceCreationTime": "144056.313000", "InstanceNumber": 1, - "LargestImagePixelValue": 58982, + "LargestImagePixelValue": 61108, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e05a", + "ProtocolName": "func_task-s01e04a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03001448171654, + "SAR": 0.03000928678979, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e05a_SBRef", - "SeriesNumber": 33, - "SeriesTime": "150653.236000", + "SeriesDescription": "func_task-s01e04a_SBRef", + "SeriesNumber": 29, + "SeriesTime": "144056.309000", "SliceLocation": -41.912267100334, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "130237.300000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12124.0, + "WindowCenter": 12128.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 26263.0, + "WindowWidth": 26218.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e05a_sbref.nii.gz b/sub-06/ses-001/func/sub-06_ses-001_task-s01e05a_sbref.nii.gz index fb145c62d26..c2c76df87fe 120000 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e05a_sbref.nii.gz +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e05a_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/62/pW/SHA256E-s1091949--77db4d781de91f8e70c74ad0db9f38b5e270c448e36f79431d4da9e5776c4fcd.nii.gz/SHA256E-s1091949--77db4d781de91f8e70c74ad0db9f38b5e270c448e36f79431d4da9e5776c4fcd.nii.gz \ No newline at end of file +../../../.git/annex/objects/j1/Gw/SHA256E-s1091197--f011fd5213cfce0a2ab61494f3ec5ec1fd796ff4be62d7d05f0a69df2688873e.nii.gz/SHA256E-s1091197--f011fd5213cfce0a2ab61494f3ec5ec1fd796ff4be62d7d05f0a69df2688873e.nii.gz \ No newline at end of file diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e05b_bold.json b/sub-06/ses-001/func/sub-06_ses-001_task-s01e05b_bold.json index 6c00052adfc..0c0550467c7 100644 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e05b_bold.json +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e05b_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "15:18:25.665000", + "AcquisitionTime": "14:53:28.285000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -45,29 +45,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e05b", + "ProtocolName": "func_task-s01e04b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0300145, + "SAR": 0.0300093, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e05b", - "SeriesNumber": 36, + "SeriesDescription": "func_task-s01e04b", + "SeriesNumber": 32, "ShimSetting": [633, -7278, -8855, 569, 34, -288, -44, -23], "SliceThickness": 2, - "SliceTiming": [0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685], + "SliceTiming": [0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875, 0, 0.785, 0.1, 0.8825, 0.1975, 0.98, 0.295, 1.08, 0.3925, 1.1775, 0.49, 1.275, 0.59, 1.3725, 0.6875], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 227.312, - "WipMemBlock": "5bc0c2ae-b1dc-4dbc-8408-1018e6c7ee40||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "866e5185-6963-415b-8f41-b14d8a118827||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9947782754898071, 0.14333753287792206, -0.017726117745041847, 95.35079956054688], [0.13899260759353638, 1.8384596109390259, -0.7750788927078247, -76.56263732910156], @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 488], + "dcmmeta_shape": [104, 104, 60, 468], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.25938, + "ImagingFrequency": 123.259378, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e05b", + "ProtocolName": "func_task-s01e04b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03001448171654, + "SAR": 0.03000928678979, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,9 +135,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e05b", - "SeriesNumber": 36, - "SeriesTime": "151936.350000", + "SeriesDescription": "func_task-s01e04b", + "SeriesNumber": 32, + "SeriesTime": "145458.630000", "SliceLocation": -41.912267100334, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -154,14 +154,14 @@ }, "time": { "samples": { - "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 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21199.0, 21146.0] }, "slices": {} } diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e05b_bold.nii.gz b/sub-06/ses-001/func/sub-06_ses-001_task-s01e05b_bold.nii.gz index d278c0c93e4..f6f95d5f274 120000 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e05b_bold.nii.gz +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e05b_bold.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/pW/v7/SHA256E-s514598933--6b8992b0d6b4c16c641f5c8627472a43150337f3d17adb83aa6725c26a85ae20.nii.gz/SHA256E-s514598933--6b8992b0d6b4c16c641f5c8627472a43150337f3d17adb83aa6725c26a85ae20.nii.gz \ No newline at end of file +../../../.git/annex/objects/z2/Q7/SHA256E-s493041354--d20a35974449492f9685e579fb66841a83568672827b9a702ed6f0c050223bdf.nii.gz/SHA256E-s493041354--d20a35974449492f9685e579fb66841a83568672827b9a702ed6f0c050223bdf.nii.gz \ No newline at end of file diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e05b_sbref.json b/sub-06/ses-001/func/sub-06_ses-001_task-s01e05b_sbref.json index 4dd63234f80..2b3a93738b2 100644 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e05b_sbref.json +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e05b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "15:18:15.235000", + "AcquisitionTime": "14:53:17.855000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -43,29 +43,29 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e05b", + "ProtocolName": "func_task-s01e04b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0300145, + "SAR": 0.0300093, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e05b_SBRef", - "SeriesNumber": 35, + "SeriesDescription": "func_task-s01e04b_SBRef", + "SeriesNumber": 31, "ShimSetting": [633, -7278, -8855, 569, 34, -288, -44, -23], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.295, 0.3925, 0.49, 0.5875, 0.685, 0.7825, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.3125, 4.41, 4.5075, 4.605, 4.7025, 4.8025, 4.9, 4.9975, 5.095, 5.1925, 5.2925, 5.39, 5.4875, 5.585, 5.6825, 5.78], + "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.08, 1.1775, 1.275, 1.3725, 1.47, 1.57, 1.6675, 1.765, 1.8625, 1.96, 2.06, 2.1575, 2.255, 2.3525, 2.45, 2.55, 2.6475, 2.745, 2.8425, 2.94, 3.04, 3.1375, 3.235, 3.3325, 3.43, 3.53, 3.6275, 3.725, 3.8225, 3.92, 4.02, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, "TxRefAmp": 227.312, - "WipMemBlock": "5bc0c2ae-b1dc-4dbc-8408-1018e6c7ee40||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "WipMemBlock": "866e5185-6963-415b-8f41-b14d8a118827||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ [-1.9947782754898071, 0.14333753287792206, -0.017726117745041847, 95.35079956054688], [0.13899260759353638, 1.8384596109390259, -0.7750788927078247, -76.56263732910156], @@ -85,13 +85,13 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "151815.235000", + "AcquisitionTime": "145317.855000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "151936.312000", + "ContentTime": "145458.601000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.25938, + "ImagingFrequency": 123.259378, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "151936.312000", + "InstanceCreationTime": "145458.601000", "InstanceNumber": 1, - "LargestImagePixelValue": 59536, + "LargestImagePixelValue": 62276, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e05b", + "ProtocolName": "func_task-s01e04b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.03001448171654, + "SAR": 0.03000928678979, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,9 +138,9 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e05b_SBRef", - "SeriesNumber": 35, - "SeriesTime": "151936.309000", + "SeriesDescription": "func_task-s01e04b_SBRef", + "SeriesNumber": 31, + "SeriesTime": "145458.596000", "SliceLocation": -41.912267100334, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, @@ -151,9 +151,9 @@ "StudyTime": "130237.300000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 12094.0, + "WindowCenter": 12165.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 26163.0, + "WindowWidth": 26359.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e05b_sbref.nii.gz b/sub-06/ses-001/func/sub-06_ses-001_task-s01e05b_sbref.nii.gz index 86cbd297be0..8e8f5d6a699 120000 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e05b_sbref.nii.gz +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e05b_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/mw/ZJ/SHA256E-s1091729--ae077fc04b087194b2c3afe9e3ed56eac4d6352c4fb615d22a3f81e7653bdd68.nii.gz/SHA256E-s1091729--ae077fc04b087194b2c3afe9e3ed56eac4d6352c4fb615d22a3f81e7653bdd68.nii.gz \ No newline at end of file +../../../.git/annex/objects/qP/JV/SHA256E-s1091192--f17d8ab68e7b00f27f1a59dc2995fb352104cb0229076b26dd6a0761601da1bc.nii.gz/SHA256E-s1091192--f17d8ab68e7b00f27f1a59dc2995fb352104cb0229076b26dd6a0761601da1bc.nii.gz \ No newline at end of file diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e06a_bold.json b/sub-06/ses-001/func/sub-06_ses-001_task-s01e06a_bold.json index 1de47a10396..596907765d3 100644 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e06a_bold.json +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e06a_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "13:21:11.185000", + "AcquisitionTime": "15:05:39.082500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -17,7 +17,7 @@ "EffectiveEchoSpacing": 0.000560011, "FlipAngle": 52, "ImageComments": "Unaliased_MB4_PE3_LB", - "ImageOrientationPatientDICOM": [0.998754, -0.0492901, 0.00781196, 0.0488472, 0.933464, -0.35533], + "ImageOrientationPatientDICOM": [0.997389, -0.0694963, 0.0196273, 0.0716688, 0.91923, -0.387144], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -45,33 +45,33 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e01a", + "ProtocolName": "func_task-s01e05a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0267942, + "SAR": 0.0300145, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e01a", - "SeriesNumber": 8, - "ShimSetting": [633, -7264, -8826, 607, 41, -258, -104, 4], + "SeriesDescription": "func_task-s01e05a", + "SeriesNumber": 34, + "ShimSetting": [633, -7278, -8855, 569, 34, -288, -44, -23], "SliceThickness": 2, - "SliceTiming": [0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.2925, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685], + "SliceTiming": [0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, - "TxRefAmp": 218.175, - "WipMemBlock": "796af6bf-5cc3-422a-92e4-ceadafa0e39b||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "TxRefAmp": 227.312, + "WipMemBlock": "d5f36fab-69ec-468f-a3e8-ce867bcf56c0||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ - [-1.997507929801941, 0.09769442677497864, -0.020444201305508614, 97.49701690673828], - [0.09858021885156631, 1.8669270277023315, -0.7105386853218079, -73.05086517333984], - [0.015623918734490871, 0.710660994052887, 1.8694162368774414, -68.10543060302734], + [-1.9947782754898071, 0.14333753287792206, -0.017726117745041847, 95.35079956054688], + [0.13899260759353638, 1.8384596109390259, -0.7750788927078247, -76.56263732910156], + [0.0392545722424984, 0.7742871046066284, 1.843621015548706, -76.73834228515625], [0.0, 0.0, 0.0, 1.0] ], "dcmmeta_reorient_transform": [ @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 482], + "dcmmeta_shape": [104, 104, 60, 488], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -96,8 +96,8 @@ "EchoTrainLength": 104, "FlipAngle": 52.0, "HighBit": 15, - "ImageOrientationPatient": [0.99875395294044, -0.0492901083151, 0.00781195930131, 0.04884721235583, 0.93346353913251, -0.3553305094631], - "ImagePositionPatient": [-870.21319250146, -762.9208839176, 258.08615547529], + "ImageOrientationPatient": [0.99738910849068, -0.0694963011415, 0.0196272869194, 0.07166876905677, 0.91922981221843, -0.3871435649352], + "ImagePositionPatient": [-888.38870013904, -731.4047014278, 270.56508536238], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259339, + "ImagingFrequency": 123.259378, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e01a", + "ProtocolName": "func_task-s01e05a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.02679424747818, + "SAR": 0.03001448171654, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,14 +135,14 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e01a", - "SeriesNumber": 8, - "SeriesTime": "132238.624000", - "SliceLocation": -38.702591950532, + "SeriesDescription": "func_task-s01e05a", + "SeriesNumber": 34, + "SeriesTime": "150653.271000", + "SliceLocation": -41.912267100334, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, "SoftwareVersions": "syngo MR E11", - "SpacingBetweenSlices": 2.0000000188839, + "SpacingBetweenSlices": 2.0000000419061, "SpecificCharacterSet": "ISO_IR 100", "StudyID": "1", "StudyTime": "130237.300000", @@ -154,14 +154,14 @@ }, "time": { "samples": { - "AcquisitionNumber": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 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b/sub-06/ses-001/func/sub-06_ses-001_task-s01e06a_bold.nii.gz index 369377d3e8e..8ea4d74a654 120000 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e06a_bold.nii.gz +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e06a_bold.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/8K/px/SHA256E-s504798775--39eddfd02f906c938ce534e850c9f3b2c4b791f9109066f5d015857fdea59f5a.nii.gz/SHA256E-s504798775--39eddfd02f906c938ce534e850c9f3b2c4b791f9109066f5d015857fdea59f5a.nii.gz \ No newline at end of file +../../../.git/annex/objects/jQ/fP/SHA256E-s514615374--1f3dcb33476dac22ed9978922c7e81a924672cd1aaefa22806c45cecc06a644d.nii.gz/SHA256E-s514615374--1f3dcb33476dac22ed9978922c7e81a924672cd1aaefa22806c45cecc06a644d.nii.gz \ No newline at end of file diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e06a_sbref.json b/sub-06/ses-001/func/sub-06_ses-001_task-s01e06a_sbref.json index 9846a67c747..073329704a2 100644 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e06a_sbref.json +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e06a_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "13:21:0.755000", + "AcquisitionTime": "15:05:28.652500", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -17,7 +17,7 @@ "EffectiveEchoSpacing": 0.000560011, "FlipAngle": 52, "ImageComments": "Single-band_reference", - "ImageOrientationPatientDICOM": [0.998754, -0.0492901, 0.00781196, 0.0488472, 0.933464, -0.35533], + "ImageOrientationPatientDICOM": [0.997389, -0.0694963, 0.0196273, 0.0716688, 0.91923, -0.387144], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -43,33 +43,33 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e01a", + "ProtocolName": "func_task-s01e05a", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0267942, + "SAR": 0.0300145, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e01a_SBRef", - "SeriesNumber": 7, - "ShimSetting": [633, -7264, -8826, 607, 41, -258, -104, 4], + "SeriesDescription": "func_task-s01e05a_SBRef", + "SeriesNumber": 33, + "ShimSetting": [633, -7278, -8855, 569, 34, -288, -44, -23], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.3925, 0.49, 0.5875, 0.685, 0.7825, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.45, 2.5475, 2.645, 2.7425, 2.84, 2.94, 3.0375, 3.135, 3.2325, 3.33, 3.43, 3.5275, 3.625, 3.7225, 3.82, 3.92, 4.0175, 4.115, 4.2125, 4.31, 4.41, 4.5075, 4.605, 4.7025, 4.8, 4.9, 4.9975, 5.095, 5.1925, 5.29, 5.39, 5.4875, 5.585, 5.6825, 5.78], + "SliceTiming": [0, 0.0975, 0.195, 0.295, 0.3925, 0.49, 0.5875, 0.685, 0.785, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.3125, 4.41, 4.5075, 4.605, 4.7025, 4.8025, 4.9, 4.9975, 5.095, 5.1925, 5.2925, 5.39, 5.4875, 5.585, 5.6825, 5.78], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, - "TxRefAmp": 218.175, - "WipMemBlock": "796af6bf-5cc3-422a-92e4-ceadafa0e39b||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "TxRefAmp": 227.312, + "WipMemBlock": "d5f36fab-69ec-468f-a3e8-ce867bcf56c0||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ - [-1.997507929801941, 0.09769442677497864, -0.020444201305508614, 97.49701690673828], - [0.09858021885156631, 1.8669270277023315, -0.7105386853218079, -73.05086517333984], - [0.015623918734490871, 0.710660994052887, 1.8694162368774414, -68.10543060302734], + [-1.9947782754898071, 0.14333753287792206, -0.017726117745041847, 95.35079956054688], + [0.13899260759353638, 1.8384596109390259, -0.7750788927078247, -76.56263732910156], + [0.0392545722424984, 0.7742871046066284, 1.843621015548706, -76.73834228515625], [0.0, 0.0, 0.0, 1.0] ], "dcmmeta_reorient_transform": [ @@ -85,20 +85,20 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "132100.755000", + "AcquisitionTime": "150528.652500", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "132238.592000", + "ContentTime": "150653.239000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, "FlipAngle": 52.0, "HighBit": 15, - "ImageOrientationPatient": [0.99875395294044, -0.0492901083151, 0.00781195930131, 0.04884721235583, 0.93346353913251, -0.3553305094631], - "ImagePositionPatient": [-870.21319250146, -762.9208839176, 258.08615547529], + "ImageOrientationPatient": [0.99738910849068, -0.0694963011415, 0.0196272869194, 0.07166876905677, 0.91922981221843, -0.3871435649352], + "ImagePositionPatient": [-888.38870013904, -731.4047014278, 270.56508536238], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259339, + "ImagingFrequency": 123.259378, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "132238.592000", + "InstanceCreationTime": "150653.239000", "InstanceNumber": 1, - "LargestImagePixelValue": 62702, + "LargestImagePixelValue": 58982, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e01a", + "ProtocolName": "func_task-s01e05a", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.02679424747818, + "SAR": 0.03001448171654, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,22 +138,22 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e01a_SBRef", - "SeriesNumber": 7, - "SeriesTime": "132238.588000", - "SliceLocation": -38.702591950532, + "SeriesDescription": "func_task-s01e05a_SBRef", + "SeriesNumber": 33, + "SeriesTime": "150653.236000", + "SliceLocation": -41.912267100334, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, "SoftwareVersions": "syngo MR E11", - "SpacingBetweenSlices": 2.0000000188839, + "SpacingBetweenSlices": 2.0000000419061, "SpecificCharacterSet": "ISO_IR 100", "StudyID": "1", "StudyTime": "130237.300000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 10641.0, - "WindowCenterWidthExplanation": "WINDOW1", - "WindowWidth": 24970.0, + "WindowCenter": 12124.0, + "WindowCenterWidthExplanation": "Algo1", + "WindowWidth": 26263.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e06a_sbref.nii.gz b/sub-06/ses-001/func/sub-06_ses-001_task-s01e06a_sbref.nii.gz index f3be8b8e7b0..fb145c62d26 120000 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e06a_sbref.nii.gz +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e06a_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/FF/7p/SHA256E-s1085601--d5490d973aa4ee7e00c5755dd310f54d1a6a78e6b697f4f288dcaa5bb2fb6402.nii.gz/SHA256E-s1085601--d5490d973aa4ee7e00c5755dd310f54d1a6a78e6b697f4f288dcaa5bb2fb6402.nii.gz \ No newline at end of file +../../../.git/annex/objects/62/pW/SHA256E-s1091949--77db4d781de91f8e70c74ad0db9f38b5e270c448e36f79431d4da9e5776c4fcd.nii.gz/SHA256E-s1091949--77db4d781de91f8e70c74ad0db9f38b5e270c448e36f79431d4da9e5776c4fcd.nii.gz \ No newline at end of file diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e06b_bold.json b/sub-06/ses-001/func/sub-06_ses-001_task-s01e06b_bold.json index 9d9cce19d7a..6c00052adfc 100644 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e06b_bold.json +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e06b_bold.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "13:33:37.085000", + "AcquisitionTime": "15:18:25.665000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -17,7 +17,7 @@ "EffectiveEchoSpacing": 0.000560011, "FlipAngle": 52, "ImageComments": "Unaliased_MB4_PE3_LB", - "ImageOrientationPatientDICOM": [0.998754, -0.0492901, 0.00781196, 0.0488472, 0.933464, -0.35533], + "ImageOrientationPatientDICOM": [0.997389, -0.0694963, 0.0196273, 0.0716688, 0.91923, -0.387144], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -45,33 +45,33 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e01b", + "ProtocolName": "func_task-s01e05b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0267942, + "SAR": 0.0300145, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e01b", - "SeriesNumber": 10, - "ShimSetting": [633, -7264, -8826, 607, 41, -258, -104, 4], + "SeriesDescription": "func_task-s01e05b", + "SeriesNumber": 36, + "ShimSetting": [633, -7278, -8855, 569, 34, -288, -44, -23], "SliceThickness": 2, - "SliceTiming": [0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.275, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.275, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.275, 0.5875, 1.3725, 0.685, 0, 0.785, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.275, 0.5875, 1.3725, 0.685], + "SliceTiming": [0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685, 0, 0.7825, 0.0975, 0.8825, 0.195, 0.98, 0.295, 1.0775, 0.3925, 1.175, 0.49, 1.2725, 0.5875, 1.3725, 0.685], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, - "TxRefAmp": 218.175, - "WipMemBlock": "583bf462-828f-4273-865a-d678378c4062||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "TxRefAmp": 227.312, + "WipMemBlock": "5bc0c2ae-b1dc-4dbc-8408-1018e6c7ee40||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ - [-1.997507929801941, 0.09769442677497864, -0.020444201305508614, 97.49701690673828], - [0.09858021885156631, 1.8669270277023315, -0.7105386853218079, -73.05086517333984], - [0.015623918734490871, 0.710660994052887, 1.8694162368774414, -68.10543060302734], + [-1.9947782754898071, 0.14333753287792206, -0.017726117745041847, 95.35079956054688], + [0.13899260759353638, 1.8384596109390259, -0.7750788927078247, -76.56263732910156], + [0.0392545722424984, 0.7742871046066284, 1.843621015548706, -76.73834228515625], [0.0, 0.0, 0.0, 1.0] ], "dcmmeta_reorient_transform": [ @@ -80,7 +80,7 @@ [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0] ], - "dcmmeta_shape": [104, 104, 60, 482], + "dcmmeta_shape": [104, 104, 60, 488], "dcmmeta_slice_dim": 2, "dcmmeta_version": 0.6, "global": { @@ -96,8 +96,8 @@ "EchoTrainLength": 104, "FlipAngle": 52.0, "HighBit": 15, - "ImageOrientationPatient": [0.99875395294044, -0.0492901083151, 0.00781195930131, 0.04884721235583, 0.93346353913251, -0.3553305094631], - "ImagePositionPatient": [-870.21319250146, -762.9208839176, 258.08615547529], + "ImageOrientationPatient": [0.99738910849068, -0.0694963011415, 0.0196272869194, 0.07166876905677, 0.91922981221843, -0.3871435649352], + "ImagePositionPatient": [-888.38870013904, -731.4047014278, 270.56508536238], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -107,7 +107,7 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259346, + "ImagingFrequency": 123.25938, "InPlanePhaseEncodingDirection": "COL", "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, @@ -123,10 +123,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e01b", + "ProtocolName": "func_task-s01e05b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.02679424747818, + "SAR": 0.03001448171654, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -135,516 +135,33 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e01b", - "SeriesNumber": 10, - "SeriesTime": "133453.264000", - "SliceLocation": -38.702591950532, + "SeriesDescription": "func_task-s01e05b", + 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a/sub-06/ses-001/func/sub-06_ses-001_task-s01e06b_bold.nii.gz b/sub-06/ses-001/func/sub-06_ses-001_task-s01e06b_bold.nii.gz index 853ea75ecfa..d278c0c93e4 120000 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e06b_bold.nii.gz +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e06b_bold.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/Jv/6Q/SHA256E-s505976232--51aa8a78e1d8a37ce0814dda19dd58de4e49371338051eb11abf4fc52b069623.nii.gz/SHA256E-s505976232--51aa8a78e1d8a37ce0814dda19dd58de4e49371338051eb11abf4fc52b069623.nii.gz \ No newline at end of file +../../../.git/annex/objects/pW/v7/SHA256E-s514598933--6b8992b0d6b4c16c641f5c8627472a43150337f3d17adb83aa6725c26a85ae20.nii.gz/SHA256E-s514598933--6b8992b0d6b4c16c641f5c8627472a43150337f3d17adb83aa6725c26a85ae20.nii.gz \ No newline at end of file diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e06b_sbref.json b/sub-06/ses-001/func/sub-06_ses-001_task-s01e06b_sbref.json index 5aabebd3872..4dd63234f80 100644 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e06b_sbref.json +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e06b_sbref.json @@ -1,7 +1,7 @@ { "AcquisitionMatrixPE": 104, "AcquisitionNumber": 1, - "AcquisitionTime": "13:33:26.655000", + "AcquisitionTime": "15:18:15.235000", "BandwidthPerPixelPhaseEncode": 17.17, "BaseResolution": 104, "BodyPartExamined": "BRAIN", @@ -17,7 +17,7 @@ "EffectiveEchoSpacing": 0.000560011, "FlipAngle": 52, "ImageComments": "Single-band_reference", - "ImageOrientationPatientDICOM": [0.998754, -0.0492901, 0.00781196, 0.0488472, 0.933464, -0.35533], + "ImageOrientationPatientDICOM": [0.997389, -0.0694963, 0.0196273, 0.0716688, 0.91923, -0.387144], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -43,33 +43,33 @@ "PhaseResolution": 1, "PixelBandwidth": 2290, "ProcedureStepDescription": "video_friends", - "ProtocolName": "func_task-s01e01b", + "ProtocolName": "func_task-s01e05b", "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold", "ReceiveCoilActiveElements": "HC1-7;NC1,2", "ReceiveCoilName": "HeadNeck_64", "ReconMatrixPE": 104, "RepetitionTime": 1.49, - "SAR": 0.0267942, + "SAR": 0.0300145, "ScanOptions": "FS", "ScanningSequence": "EP", "SequenceName": "epfid2d1_104", "SequenceVariant": "SK_SS", - "SeriesDescription": "func_task-s01e01b_SBRef", - "SeriesNumber": 9, - "ShimSetting": [633, -7264, -8826, 607, 41, -258, -104, 4], + "SeriesDescription": "func_task-s01e05b_SBRef", + "SeriesNumber": 35, + "ShimSetting": [633, -7278, -8855, 569, 34, -288, -44, -23], "SliceThickness": 2, - "SliceTiming": [0, 0.0975, 0.195, 0.295, 0.3925, 0.49, 0.5875, 0.685, 0.785, 0.8825, 0.98, 1.0775, 1.175, 1.275, 1.3725, 1.47, 1.5675, 1.665, 1.765, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.3125, 4.41, 4.5075, 4.605, 4.7025, 4.8025, 4.9, 4.9975, 5.095, 5.1925, 5.2925, 5.39, 5.4875, 5.585, 5.6825, 5.7825], + "SliceTiming": [0, 0.0975, 0.195, 0.295, 0.3925, 0.49, 0.5875, 0.685, 0.7825, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.3125, 4.41, 4.5075, 4.605, 4.7025, 4.8025, 4.9, 4.9975, 5.095, 5.1925, 5.2925, 5.39, 5.4875, 5.585, 5.6825, 5.78], "SoftwareVersions": "syngo_MR_E11", "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "friends", "TotalReadoutTime": 0.0576811, - "TxRefAmp": 218.175, - "WipMemBlock": "583bf462-828f-4273-865a-d678378c4062||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", + "TxRefAmp": 227.312, + "WipMemBlock": "5bc0c2ae-b1dc-4dbc-8408-1018e6c7ee40||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", "dcmmeta_affine": [ - [-1.997507929801941, 0.09769442677497864, -0.020444201305508614, 97.49701690673828], - [0.09858021885156631, 1.8669270277023315, -0.7105386853218079, -73.05086517333984], - [0.015623918734490871, 0.710660994052887, 1.8694162368774414, -68.10543060302734], + [-1.9947782754898071, 0.14333753287792206, -0.017726117745041847, 95.35079956054688], + [0.13899260759353638, 1.8384596109390259, -0.7750788927078247, -76.56263732910156], + [0.0392545722424984, 0.7742871046066284, 1.843621015548706, -76.73834228515625], [0.0, 0.0, 0.0, 1.0] ], "dcmmeta_reorient_transform": [ @@ -85,20 +85,20 @@ "const": { "AcquisitionMatrix": [104, 0, 0, 104], "AcquisitionNumber": 1, - "AcquisitionTime": "133326.655000", + "AcquisitionTime": "151815.235000", "AngioFlag": "N", "BitsAllocated": 16, "BitsStored": 16, "BodyPartExamined": "BRAIN", "Columns": 832, - "ContentTime": "133453.239000", + "ContentTime": "151936.312000", "EchoNumbers": 1, "EchoTime": 37.0, "EchoTrainLength": 104, "FlipAngle": 52.0, "HighBit": 15, - "ImageOrientationPatient": [0.99875395294044, -0.0492901083151, 0.00781195930131, 0.04884721235583, 0.93346353913251, -0.3553305094631], - "ImagePositionPatient": [-870.21319250146, -762.9208839176, 258.08615547529], + "ImageOrientationPatient": [0.99738910849068, -0.0694963011415, 0.0196272869194, 0.07166876905677, 0.91922981221843, -0.3871435649352], + "ImagePositionPatient": [-888.38870013904, -731.4047014278, 270.56508536238], "ImageType": [ "ORIGINAL", "PRIMARY", @@ -107,11 +107,11 @@ "MOSAIC" ], "ImagedNucleus": "1H", - "ImagingFrequency": 123.259346, + "ImagingFrequency": 123.25938, "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "133453.239000", + "InstanceCreationTime": "151936.312000", "InstanceNumber": 1, - "LargestImagePixelValue": 56174, + "LargestImagePixelValue": 59536, "MRAcquisitionType": "2D", "MagneticFieldStrength": 3.0, "Manufacturer": "SIEMENS", @@ -126,10 +126,10 @@ "PixelBandwidth": 2290.0, "PixelRepresentation": 0, "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-s01e01b", + "ProtocolName": "func_task-s01e05b", "RepetitionTime": 1490.0, "Rows": 832, - "SAR": 0.02679424747818, + "SAR": 0.03001448171654, "SamplesPerPixel": 1, "ScanOptions": "FS", "ScanningSequence": "EP", @@ -138,22 +138,22 @@ "SK", "SS" ], - "SeriesDescription": "func_task-s01e01b_SBRef", - "SeriesNumber": 9, - "SeriesTime": "133453.235000", - "SliceLocation": -38.702591950532, + "SeriesDescription": "func_task-s01e05b_SBRef", + "SeriesNumber": 35, + "SeriesTime": "151936.309000", + "SliceLocation": -41.912267100334, "SliceThickness": 2.0, "SmallestImagePixelValue": 0, "SoftwareVersions": "syngo MR E11", - "SpacingBetweenSlices": 2.0000000188839, + "SpacingBetweenSlices": 2.0000000419061, "SpecificCharacterSet": "ISO_IR 100", "StudyID": "1", "StudyTime": "130237.300000", "TransmitCoilName": "Body", "VariableFlipAngleFlag": "N", - "WindowCenter": 11857.0, + "WindowCenter": 12094.0, "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 25541.0, + "WindowWidth": 26163.0, "dBdt": 0.0}, "slices": {} } diff --git a/sub-06/ses-001/func/sub-06_ses-001_task-s01e06b_sbref.nii.gz b/sub-06/ses-001/func/sub-06_ses-001_task-s01e06b_sbref.nii.gz index 90294a18d2d..86cbd297be0 120000 --- a/sub-06/ses-001/func/sub-06_ses-001_task-s01e06b_sbref.nii.gz +++ b/sub-06/ses-001/func/sub-06_ses-001_task-s01e06b_sbref.nii.gz @@ -1 +1 @@ -../../../.git/annex/objects/KV/8j/SHA256E-s1087359--27886afb00a991ec2e794012a3624d3b264ba1f5c0adfae3c618925b295af4fb.nii.gz/SHA256E-s1087359--27886afb00a991ec2e794012a3624d3b264ba1f5c0adfae3c618925b295af4fb.nii.gz \ No newline at end of file +../../../.git/annex/objects/mw/ZJ/SHA256E-s1091729--ae077fc04b087194b2c3afe9e3ed56eac4d6352c4fb615d22a3f81e7653bdd68.nii.gz/SHA256E-s1091729--ae077fc04b087194b2c3afe9e3ed56eac4d6352c4fb615d22a3f81e7653bdd68.nii.gz \ No newline at end of file diff --git a/sub-06/ses-040/anat/sub-06_ses-040_localizer1.json b/sub-06/ses-040/anat/sub-06_ses-040_localizer1.json deleted file mode 100644 index 3eb1ba9ffff..00000000000 --- a/sub-06/ses-040/anat/sub-06_ses-040_localizer1.json +++ /dev/null @@ -1,83 +0,0 @@ -{ - "AcquisitionMatrixPE": 233, - "AcquisitionNumber": 1, - "AcquisitionTime": "16:00:22.022500", - "BaseResolution": 256, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190902", - "DeviceSerialNumber": "167006", - "DwellTime": 6.1e-06, - "EchoTime": 0.00369, - "FlipAngle": 20, - "HeudiconvVersion": "0.10.0", - "ImageOrientationPatientDICOM": [ - 0, - 1, - 0, - 0, - 0, - -1 - ], - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "NORM", - "DIS2D" - ], - "ImagingFrequency": 123.259, - "InPlanePhaseEncodingDirectionDICOM": "ROW", - "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", - "InstitutionName": "IUGM", - "InstitutionalDepartmentName": "Department", - "Interpolation2D": 1, - "MRAcquisitionType": "2D", - "MagneticFieldStrength": 3, - 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No newline at end of file diff --git a/sub-06/ses-040/anat/sub-06_ses-040_localizer1.nii.gz b/sub-06/ses-040/anat/sub-06_ses-040_localizer1.nii.gz deleted file mode 120000 index 48e8426f012..00000000000 --- a/sub-06/ses-040/anat/sub-06_ses-040_localizer1.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/J0/gK/SHA256E-s599587--e944a84fac3105405f6bbcfa3d95d7b0634bb626f9a4768577f323bd6f25e447.nii.gz/SHA256E-s599587--e944a84fac3105405f6bbcfa3d95d7b0634bb626f9a4768577f323bd6f25e447.nii.gz \ No newline at end of file diff --git a/sub-06/ses-040/anat/sub-06_ses-040_localizer2.json b/sub-06/ses-040/anat/sub-06_ses-040_localizer2.json deleted file mode 100644 index 4b024a67c83..00000000000 --- a/sub-06/ses-040/anat/sub-06_ses-040_localizer2.json +++ /dev/null @@ -1,81 +0,0 @@ -{ - "AcquisitionMatrixPE": 233, - "AcquisitionNumber": 1, - "AcquisitionTime": "16:00:36.002500", - "BaseResolution": 256, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": 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-../../../.git/annex/objects/9K/7Z/SHA256E-s188323--4094096fc573a2b76326219e55c141031fa3e4b74f942ef7d0de4041e7d5ccb1.nii.gz/SHA256E-s188323--4094096fc573a2b76326219e55c141031fa3e4b74f942ef7d0de4041e7d5ccb1.nii.gz \ No newline at end of file diff --git a/sub-06/ses-040/anat/sub-06_ses-040_localizer3.json b/sub-06/ses-040/anat/sub-06_ses-040_localizer3.json deleted file mode 100644 index 864bb8a7a20..00000000000 --- a/sub-06/ses-040/anat/sub-06_ses-040_localizer3.json +++ /dev/null @@ -1,81 +0,0 @@ -{ - "AcquisitionMatrixPE": 233, - "AcquisitionNumber": 1, - "AcquisitionTime": "16:00:29.012500", - "BaseResolution": 256, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190902", - "DeviceSerialNumber": "167006", - "DwellTime": 6.1e-06, - "EchoTime": 0.00369, - "FlipAngle": 20, - "HeudiconvVersion": "0.10.0", - "ImageOrientationPatientDICOM": [ - 1, - 0, - 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-../../../.git/annex/objects/W7/kp/SHA256E-s3114771--6a15eb3965eaa75afbca10fe102bf963b553f9540b7479fa12d57001e6850b93.nii.gz/SHA256E-s3114771--6a15eb3965eaa75afbca10fe102bf963b553f9540b7479fa12d57001e6850b93.nii.gz \ No newline at end of file diff --git a/sub-06/ses-040/fmap/sub-06_ses-040_acq-sbref_dir-AP_run-01_epi.json b/sub-06/ses-040/fmap/sub-06_ses-040_acq-sbref_dir-AP_run-01_epi.json deleted file mode 100644 index fac890de51c..00000000000 --- a/sub-06/ses-040/fmap/sub-06_ses-040_acq-sbref_dir-AP_run-01_epi.json +++ /dev/null @@ -1,166 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "16:01:20.677500", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilCombinationMethod": "Sum of Squares", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20211006", - "DerivedVendorReportedEchoSpacing": 0.000560011, - 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a/sub-06/ses-040/fmap/sub-06_ses-040_acq-sbref_dir-PA_run-01_epi.json +++ /dev/null @@ -1,166 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "16:03:4.375000", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilCombinationMethod": "Sum of Squares", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20211006", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": "167006", - "DwellTime": 2.1e-06, - "EchoTime": 0.037, - "EchoTrainLength": 104, - "EffectiveEchoSpacing": 0.000560011, - "FlipAngle": 52, - "HeudiconvVersion": "0.5.3.post569+g418601f", - "ImageComments": "Single-band reference", - "ImageOrientationPatientDICOM": [0.999194, -0.0400205, 0.00308996, 0.0385598, 0.935637, -0.350851], - "ImageOrientationText": "Tra>Cor(-20.5)>Sag(-0.6)", - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "ND", - 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a/sub-06/ses-040/fmap/sub-06_ses-040_acq-sbref_dir-PA_run-01_epi.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/71/kZ/SHA256E-s1090244--bb778185f13cd80943ff7c6eb40a9a1c8498fbf03624049e74b1551e5d84936c.nii.gz/SHA256E-s1090244--bb778185f13cd80943ff7c6eb40a9a1c8498fbf03624049e74b1551e5d84936c.nii.gz \ No newline at end of file diff --git a/sub-06/ses-040/func/sub-06_ses-040_task-s02e04a_bold.json b/sub-06/ses-040/func/sub-06_ses-040_task-s02e04a_bold.json deleted file mode 100644 index 0d9f2aa4c54..00000000000 --- a/sub-06/ses-040/func/sub-06_ses-040_task-s02e04a_bold.json +++ /dev/null @@ -1,169 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "16:03:14.805000", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190902", - 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--- a/sub-06/ses-040/func/sub-06_ses-040_task-s02e04a_sbref.json +++ /dev/null @@ -1,164 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "16:03:4.375000", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilCombinationMethod": "Sum of Squares", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20211006", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": "167006", - "DwellTime": 2.1e-06, - "EchoTime": 0.037, - "EchoTrainLength": 104, - "EffectiveEchoSpacing": 0.000560011, - "FlipAngle": 52, - "HeudiconvVersion": "0.5.3.post569+g418601f", - "ImageComments": "Single-band reference", - "ImageOrientationPatientDICOM": [0.999194, -0.0400205, 0.00308996, 0.0385598, 0.935637, -0.350851], - "ImageOrientationText": "Tra>Cor(-20.5)>Sag(-0.6)", - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "ND", - 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-../../../.git/annex/objects/4g/45/SHA256E-s190290--bf272cdd154ab459456443c266998e137635371c02059f2cc9278ef001b2c97f.nii.gz/SHA256E-s190290--bf272cdd154ab459456443c266998e137635371c02059f2cc9278ef001b2c97f.nii.gz \ No newline at end of file diff --git a/sub-06/ses-041/anat/sub-06_ses-041_localizer3.json b/sub-06/ses-041/anat/sub-06_ses-041_localizer3.json deleted file mode 100644 index 286704ac311..00000000000 --- a/sub-06/ses-041/anat/sub-06_ses-041_localizer3.json +++ /dev/null @@ -1,81 +0,0 @@ -{ - "AcquisitionMatrixPE": 233, - "AcquisitionNumber": 1, - "AcquisitionTime": "16:08:30.050000", - "BaseResolution": 256, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20190902", - "DeviceSerialNumber": "167006", - "DwellTime": 6.1e-06, - "EchoTime": 0.00369, - "FlipAngle": 20, - "HeudiconvVersion": "0.10.0", - "ImageOrientationPatientDICOM": [ - 1, - 0, - 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-../../../.git/annex/objects/0W/kX/SHA256E-s3112051--a6ff2e470ba465472921195b61348089b0944f49d351c953d723523387eb0fda.nii.gz/SHA256E-s3112051--a6ff2e470ba465472921195b61348089b0944f49d351c953d723523387eb0fda.nii.gz \ No newline at end of file diff --git a/sub-06/ses-041/fmap/sub-06_ses-041_acq-sbref_dir-AP_run-01_epi.json b/sub-06/ses-041/fmap/sub-06_ses-041_acq-sbref_dir-AP_run-01_epi.json deleted file mode 100644 index 06eeaf5697c..00000000000 --- a/sub-06/ses-041/fmap/sub-06_ses-041_acq-sbref_dir-AP_run-01_epi.json +++ /dev/null @@ -1,166 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "16:09:24.865000", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilCombinationMethod": "Sum of Squares", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20211006", - "DerivedVendorReportedEchoSpacing": 0.000560011, - 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a/sub-06/ses-041/fmap/sub-06_ses-041_acq-sbref_dir-PA_run-01_epi.json +++ /dev/null @@ -1,166 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "16:12:6.222500", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilCombinationMethod": "Sum of Squares", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20211006", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": "167006", - "DwellTime": 2.1e-06, - "EchoTime": 0.037, - "EchoTrainLength": 104, - "EffectiveEchoSpacing": 0.000560011, - "FlipAngle": 52, - "HeudiconvVersion": "0.5.3.post569+g418601f", - "ImageComments": "Single-band reference", - "ImageOrientationPatientDICOM": [0.999398, -0.0195001, -0.0287005, 0.00872161, 0.941762, -0.336166], - "ImageOrientationText": "Tra>Cor(-19.6)>Sag(-1.9)", - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "ND", - 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c466161738f..00000000000 --- a/sub-06/ses-041/fmap/sub-06_ses-041_acq-sbref_dir-PA_run-01_epi.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/3K/QG/SHA256E-s1086091--98923405da0ddd8088fb20322ddca601c765111f149f916c04da0b294afe7586.nii.gz/SHA256E-s1086091--98923405da0ddd8088fb20322ddca601c765111f149f916c04da0b294afe7586.nii.gz \ No newline at end of file diff --git a/sub-06/ses-041/func/sub-06_ses-041_task-s02e04b_bold.json b/sub-06/ses-041/func/sub-06_ses-041_task-s02e04b_bold.json deleted file mode 100644 index cd5c16a4db2..00000000000 --- a/sub-06/ses-041/func/sub-06_ses-041_task-s02e04b_bold.json +++ /dev/null @@ -1,169 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "16:12:16.652500", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilString": "HC1-7;NC1_2", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": 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index 7f257082000..00000000000 --- a/sub-06/ses-041/func/sub-06_ses-041_task-s02e04b_sbref.json +++ /dev/null @@ -1,164 +0,0 @@ -{ - "AcquisitionMatrixPE": 104, - "AcquisitionNumber": 1, - "AcquisitionTime": "16:12:6.222500", - "BandwidthPerPixelPhaseEncode": 17.17, - "BaseResolution": 104, - "BodyPartExamined": "BRAIN", - "CoilCombinationMethod": "Sum of Squares", - "ConsistencyInfo": "N4_VE11C_LATEST_20160120", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20211006", - "DerivedVendorReportedEchoSpacing": 0.000560011, - "DeviceSerialNumber": "167006", - "DwellTime": 2.1e-06, - "EchoTime": 0.037, - "EchoTrainLength": 104, - "EffectiveEchoSpacing": 0.000560011, - "FlipAngle": 52, - "HeudiconvVersion": "0.5.3.post569+g418601f", - "ImageComments": "Single-band reference", - "ImageOrientationPatientDICOM": [0.999398, -0.0195001, -0.0287005, 0.00872161, 0.941762, -0.336166], - "ImageOrientationText": "Tra>Cor(-19.6)>Sag(-1.9)", - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "ND", - "MOSAIC" -], - "ImagingFrequency": 123.259, - "InPlanePhaseEncodingDirectionDICOM": "COL", - "InstitutionAddress": "Chemin Queen-Mary 4565,Montreal,District,CA,H3W 1W5", - "InstitutionName": "IUGM", - "InstitutionalDepartmentName": "Department", - "MRAcquisitionType": "2D", - "MagneticFieldStrength": 3, - "Manufacturer": "Siemens", - "ManufacturersModelName": "Prisma_fit", - "MatrixCoilMode": "SENSE", - "Modality": "MR", - "PartialFourier": 1, - "PatientPosition": "HFS", - "PercentPhaseFOV": 100, - "PercentSampling": 100, - "PhaseEncodingDirection": "j", - "PhaseEncodingSteps": 104, - "PhaseResolution": 1, - "PixelBandwidth": 2290, - "ProcedureStepDescription": "video^friends", - "ProtocolName": "func_task-friends-s02e04b", - "PulseSequenceDetails": "%CustomerSeq%\\cmrr_mbep2d_bold", - "ReceiveCoilActiveElements": "HC1-7;NC1,2", - "ReceiveCoilName": "HeadNeck_64", - "ReconMatrixPE": 104, - "RepetitionTime": 1.49, - "SAR": 0.0447461, - "ScanOptions": "FS", - "ScanningSequence": "EP", - "SequenceName": "epfid2d1_104", - "SequenceVariant": "SK\\SS", - "SeriesDescription": "func_task-friends-s02e04b_SBRef", - "SeriesNumber": 8, - "ShimSetting": [619, -7251, -8809, 593, -18, -166, -112, -23], - "SliceThickness": 2, - "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.08, 1.1775, 1.275, 1.3725, 1.47, 1.57, 1.6675, 1.765, 1.8625, 1.96, 2.06, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825], - "SoftwareVersions": "syngo MR E11", - "SpacingBetweenSlices": 2, - "StationName": "MRC35049", - "TaskName": "s02e04b", - "TotalReadoutTime": 0.0576811, - "TxRefAmp": 250.909, - "WipMemBlock": "98b98a3f-3cb4-4414-b439-82c514965cb6||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja", - "dcmmeta_affine": [ - [-1.9987956285476685, 0.017443224787712097, -0.0671687126159668, 102.31844329833984], - [0.03900028020143509, 1.883524775505066, -0.6714262962341309, -75.85941314697266], - [-0.05740104988217354, 0.6723318099975586, 1.8827307224273682, -58.30279541015625], - [0.0, 0.0, 0.0, 1.0] -], - "dcmmeta_reorient_transform": [ - [0.0, -1.0, 0.0, 103.0], - [1.0, 0.0, 0.0, 0.0], - [0.0, 0.0, 1.0, 0.0], - [0.0, 0.0, 0.0, 1.0] -], - "dcmmeta_shape": [104, 104, 60], - "dcmmeta_slice_dim": 2, - "dcmmeta_version": 0.6, - "global": { - "const": { - "AcquisitionMatrix": [104, 0, 0, 104], - "AcquisitionNumber": 1, - "AcquisitionTime": "161206.222500", - "AngioFlag": "N", - "BitsAllocated": 16, - "BitsStored": 16, - "BodyPartExamined": "BRAIN", - "Columns": 832, - "ContentTime": "161325.127000", - "EchoNumbers": 1, - "EchoTime": 37.0, - "EchoTrainLength": 104, - "FlipAngle": 52.0, - "HighBit": 15, - "ImageOrientationPatient": [0.99939783090657, -0.0195001394422, -0.0287005250995, 0.00872161245078, 0.94176240427159, -0.3361658926436], - "ImagePositionPatient": [-838.02605032713, -789.55057118984, 276.57012985644], - "ImageType": [ - "ORIGINAL", - "PRIMARY", - "M", - "ND", - "MOSAIC" -], - "ImagedNucleus": "1H", - "ImagingFrequency": 123.258917, - "InPlanePhaseEncodingDirection": "COL", - "InstanceCreationTime": "161325.127000", - "InstanceNumber": 1, - "LargestImagePixelValue": 57773, - "MRAcquisitionType": "2D", - "MagneticFieldStrength": 3.0, - "Manufacturer": "SIEMENS", - "ManufacturerModelName": "Prisma_fit", - "Modality": "MR", - "NumberOfAverages": 1.0, - "NumberOfPhaseEncodingSteps": 104, - "PercentPhaseFieldOfView": 100.0, - "PercentSampling": 100.0, - "PerformedProcedureStepStartTime": "160735.048000", - "PhotometricInterpretation": "MONOCHROME2", - "PixelBandwidth": 2290.0, - "PixelRepresentation": 0, - "PixelSpacing": [2.0, 2.0], - "ProtocolName": "func_task-friends-s02e04b", - "RepetitionTime": 1490.0, - "Rows": 832, - "SAR": 0.04474610860279, - "SamplesPerPixel": 1, - "ScanOptions": "FS", - "ScanningSequence": "EP", - "SequenceName": "epfid2d1_104", - "SequenceVariant": [ - "SK", - "SS" -], - "SeriesDescription": "func_task-friends-s02e04b_SBRef", - "SeriesNumber": 8, - "SeriesTime": "161325.123000", - "SliceLocation": -32.853530431711, - "SliceThickness": 2.0, - "SmallestImagePixelValue": 0, - "SoftwareVersions": "syngo MR E11", - "SpacingBetweenSlices": 1.9999999677439, - "SpecificCharacterSet": "ISO_IR 100", - "StudyID": "1", - "StudyTime": "160734.970000", - "TransmitCoilName": "Body", - "VariableFlipAngleFlag": "N", - "WindowCenter": 12298.0, - "WindowCenterWidthExplanation": "Algo1", - "WindowWidth": 26828.0, - "dBdt": 0.0}, - "slices": {} - } -} \ No newline at end of file diff --git a/sub-06/ses-041/func/sub-06_ses-041_task-s02e04b_sbref.nii.gz b/sub-06/ses-041/func/sub-06_ses-041_task-s02e04b_sbref.nii.gz deleted file mode 120000 index c466161738f..00000000000 --- a/sub-06/ses-041/func/sub-06_ses-041_task-s02e04b_sbref.nii.gz +++ /dev/null @@ -1 +0,0 @@ -../../../.git/annex/objects/3K/QG/SHA256E-s1086091--98923405da0ddd8088fb20322ddca601c765111f149f916c04da0b294afe7586.nii.gz/SHA256E-s1086091--98923405da0ddd8088fb20322ddca601c765111f149f916c04da0b294afe7586.nii.gz \ No newline at end of file diff --git a/sub-06/ses-041/sub-06_ses-041_scans.tsv b/sub-06/ses-041/sub-06_ses-041_scans.tsv deleted file mode 120000 index c73a0a5db29..00000000000 --- a/sub-06/ses-041/sub-06_ses-041_scans.tsv +++ /dev/null @@ -1 +0,0 @@ -../../.git/annex/objects/jm/Xg/SHA256E-s807--ae39c21d3fe6a1e8fd38a62437d3c2148ffc98c96314d25b4d3d0a3f51990ac4.tsv/SHA256E-s807--ae39c21d3fe6a1e8fd38a62437d3c2148ffc98c96314d25b4d3d0a3f51990ac4.tsv \ No newline at end of file diff --git a/sub-06/ses-042/fmap/sub-06_ses-042_acq-sbref_dir-AP_run-01_epi.json b/sub-06/ses-042/fmap/sub-06_ses-042_acq-sbref_dir-AP_run-01_epi.json index ee681e1583c..21953689ce1 100644 --- a/sub-06/ses-042/fmap/sub-06_ses-042_acq-sbref_dir-AP_run-01_epi.json +++ b/sub-06/ses-042/fmap/sub-06_ses-042_acq-sbref_dir-AP_run-01_epi.json @@ -34,8 +34,10 @@ "InstitutionalDepartmentName": "Department", "IntendedFor": [ "ses-042/func/sub-06_ses-042_task-s06e01a_bold.nii.gz", - "ses-042/func/sub-06_ses-042_task-s06e01b_bold.nii.gz" -], + "ses-042/func/sub-06_ses-042_task-s06e01b_bold.nii.gz", + "ses-042/func/sub-06_ses-042_task-s06e02a_bold.nii.gz", + "ses-042/func/sub-06_ses-042_task-s06e02b_bold.nii.gz" + ], "MRAcquisitionType": "2D", "MagneticFieldStrength": 3, "Manufacturer": "Siemens", @@ -164,4 +166,4 @@ "dBdt": 0.0}, "slices": {} } -} \ No newline at end of file +} diff --git a/sub-06/ses-042/fmap/sub-06_ses-042_acq-sbref_dir-PA_run-03_epi.json b/sub-06/ses-042/fmap/sub-06_ses-042_acq-sbref_dir-PA_run-03_epi.json new file mode 100644 index 00000000000..86fb6b9459f --- /dev/null +++ b/sub-06/ses-042/fmap/sub-06_ses-042_acq-sbref_dir-PA_run-03_epi.json @@ -0,0 +1,73 @@ +{ + "AcquisitionMatrixPE": 104, + "AcquisitionNumber": 1, + "AcquisitionTime": "15:52:30.277500", + "BandwidthPerPixelPhaseEncode": 17.17, + "BaseResolution": 104, + "BodyPartExamined": "BRAIN", + "CoilCombinationMethod": "Sum of Squares", + "ConsistencyInfo": "N4_VE11C_LATEST_20160120", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20230411", + "DerivedVendorReportedEchoSpacing": 0.000560011, + "DeviceSerialNumber": "167006", + "DwellTime": 2.1e-06, + "EchoTime": 0.037, + "EchoTrainLength": 104, + "EffectiveEchoSpacing": 0.000560011, + "FlipAngle": 52, + "HeudiconvVersion": "0.5.3.post801+g0eb836c", + "ImageComments": "Single-band reference", + "ImageOrientationPatientDICOM": [0.998783, -0.0439548, -0.0223738, 0.0341801, 0.943885, -0.3285], + "ImageOrientationText": "Tra>Cor(-19.1)>Sag(-2.0)", + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "ND", + "MOSAIC" +], + "ImagingFrequency": 123.25882, + "InPlanePhaseEncodingDirectionDICOM": "COL", + "InstitutionAddress": "Chemin Queen-Mary 4565,Montreal,District,CA,H3W 1W5", + "InstitutionName": "IUGM", + "InstitutionalDepartmentName": "Department", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma_fit", + "MatrixCoilMode": "SENSE", + "Modality": "MR", + "NonlinearGradientCorrection": false, + "PartialFourier": 1, + "PatientPosition": "HFS", + "PercentPhaseFOV": 100, + "PercentSampling": 100, + "PhaseEncodingDirection": "j", + "PhaseEncodingSteps": 104, + "PhaseResolution": 1, + "PixelBandwidth": 2290, + "ProcedureStepDescription": "video^friends", + "ProtocolName": "func_task-friends-s06e02a", + "PulseSequenceDetails": "%CustomerSeq%\\cmrr_mbep2d_bold", + "ReceiveCoilActiveElements": "HC1-7;NC1,2", + "ReceiveCoilName": "HeadNeck_64", + "ReconMatrixPE": 104, + "RepetitionTime": 1.49, + "SAR": 0.0358094, + "ScanOptions": "FS", + "ScanningSequence": "EP", + "SequenceName": "epfid2d1_104", + "SequenceVariant": "SK\\SS", + "SeriesDescription": "func_task-friends-s06e02a_SBRef", + "SeriesNumber": 15, + "ShimSetting": [617, -7267, -8823, 582, -20, -261, 0, -41], + "SliceThickness": 2, + "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.3925, 0.49, 0.5875, 0.685, 0.7825, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.3125, 4.41, 4.5075, 4.605, 4.7025, 4.8, 4.9, 4.9975, 5.095, 5.1925, 5.29, 5.39, 5.4875, 5.585, 5.6825, 5.78], + "SoftwareVersions": "syngo MR E11", + "SpacingBetweenSlices": 2, + "StationName": "MRC35049", + "TotalReadoutTime": 0.0576811, + "TxRefAmp": 233.878, + "WipMemBlock": "f6ac7ca6-46f2-434f-a883-ca54f86993fc||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja" +} \ No newline at end of file diff --git a/sub-06/ses-042/fmap/sub-06_ses-042_acq-sbref_dir-PA_run-03_epi.nii.gz b/sub-06/ses-042/fmap/sub-06_ses-042_acq-sbref_dir-PA_run-03_epi.nii.gz new file mode 120000 index 00000000000..11122469058 --- /dev/null +++ b/sub-06/ses-042/fmap/sub-06_ses-042_acq-sbref_dir-PA_run-03_epi.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/vj/FV/SHA256E-s1088283--eb11b3def9c001a98eebe99019f9c1034346fab04a86b7ec89b4bfe303ed5bb8.nii.gz/SHA256E-s1088283--eb11b3def9c001a98eebe99019f9c1034346fab04a86b7ec89b4bfe303ed5bb8.nii.gz \ No newline at end of file diff --git a/sub-06/ses-042/fmap/sub-06_ses-042_acq-sbref_dir-PA_run-04_epi.json b/sub-06/ses-042/fmap/sub-06_ses-042_acq-sbref_dir-PA_run-04_epi.json new file mode 100644 index 00000000000..c22941354fb --- /dev/null +++ b/sub-06/ses-042/fmap/sub-06_ses-042_acq-sbref_dir-PA_run-04_epi.json @@ -0,0 +1,73 @@ +{ + "AcquisitionMatrixPE": 104, + "AcquisitionNumber": 1, + "AcquisitionTime": "16:05:16.855000", + "BandwidthPerPixelPhaseEncode": 17.17, + 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00000000000..7f16bf4fdbb --- /dev/null +++ b/sub-06/ses-042/fmap/sub-06_ses-042_acq-sbref_dir-PA_run-04_epi.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/1p/qq/SHA256E-s1089374--68f4d08110e720f2c3b8bfef42e8dda1997311c7d8c5e633efcf28139724a8df.nii.gz/SHA256E-s1089374--68f4d08110e720f2c3b8bfef42e8dda1997311c7d8c5e633efcf28139724a8df.nii.gz \ No newline at end of file diff --git a/sub-06/ses-042/func/sub-06_ses-042_task-s06e01a_events.tsv b/sub-06/ses-042/func/sub-06_ses-042_task-s06e01a_events.tsv new file mode 100644 index 00000000000..6ee950a79a0 --- /dev/null +++ b/sub-06/ses-042/func/sub-06_ses-042_task-s06e01a_events.tsv @@ -0,0 +1 @@ +onset duration trial_type response_time stim_file TODO -- fill in rows and add more tab-separated columns if desired \ No newline at end of file diff --git a/sub-06/ses-042/func/sub-06_ses-042_task-s06e01b_events.tsv b/sub-06/ses-042/func/sub-06_ses-042_task-s06e01b_events.tsv new file mode 100644 index 00000000000..6ee950a79a0 --- /dev/null +++ b/sub-06/ses-042/func/sub-06_ses-042_task-s06e01b_events.tsv @@ -0,0 +1 @@ +onset duration trial_type response_time stim_file TODO -- fill in rows and add more tab-separated columns if desired \ No newline at end of file diff --git a/sub-06/ses-042/func/sub-06_ses-042_task-s06e02a_bold.json b/sub-06/ses-042/func/sub-06_ses-042_task-s06e02a_bold.json new file mode 100644 index 00000000000..96eab6c8d54 --- /dev/null +++ b/sub-06/ses-042/func/sub-06_ses-042_task-s06e02a_bold.json @@ -0,0 +1,76 @@ +{ + "AcquisitionMatrixPE": 104, + "AcquisitionNumber": 1, + "AcquisitionTime": "15:52:40.707500", + "BandwidthPerPixelPhaseEncode": 17.17, + "BaseResolution": 104, + "BodyPartExamined": "BRAIN", + "CoilCombinationMethod": "Sum of Squares", + "ConsistencyInfo": "N4_VE11C_LATEST_20160120", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20230411", + "DerivedVendorReportedEchoSpacing": 0.000560011, + "DeviceSerialNumber": "167006", + "DwellTime": 2.1e-06, + "EchoTime": 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\ No newline at end of file diff --git a/sub-06/ses-042/func/sub-06_ses-042_task-s06e02a_events.tsv b/sub-06/ses-042/func/sub-06_ses-042_task-s06e02a_events.tsv new file mode 100644 index 00000000000..6ee950a79a0 --- /dev/null +++ b/sub-06/ses-042/func/sub-06_ses-042_task-s06e02a_events.tsv @@ -0,0 +1 @@ +onset duration trial_type response_time stim_file TODO -- fill in rows and add more tab-separated columns if desired \ No newline at end of file diff --git a/sub-06/ses-042/func/sub-06_ses-042_task-s06e02a_sbref.json b/sub-06/ses-042/func/sub-06_ses-042_task-s06e02a_sbref.json new file mode 100644 index 00000000000..fa7c9c32111 --- /dev/null +++ b/sub-06/ses-042/func/sub-06_ses-042_task-s06e02a_sbref.json @@ -0,0 +1,74 @@ +{ + "AcquisitionMatrixPE": 104, + "AcquisitionNumber": 1, + "AcquisitionTime": "15:52:30.277500", + "BandwidthPerPixelPhaseEncode": 17.17, + "BaseResolution": 104, + "BodyPartExamined": "BRAIN", + "CoilCombinationMethod": "Sum of Squares", + "ConsistencyInfo": 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+../../../.git/annex/objects/Q1/7G/SHA256E-s512636330--a2b5ec21e4770ca2cba92ea8380f8df24623a679f83a88ad4317716eb8f1dcb9.nii.gz/SHA256E-s512636330--a2b5ec21e4770ca2cba92ea8380f8df24623a679f83a88ad4317716eb8f1dcb9.nii.gz \ No newline at end of file diff --git a/sub-06/ses-042/func/sub-06_ses-042_task-s06e02b_events.tsv b/sub-06/ses-042/func/sub-06_ses-042_task-s06e02b_events.tsv new file mode 100644 index 00000000000..6ee950a79a0 --- /dev/null +++ b/sub-06/ses-042/func/sub-06_ses-042_task-s06e02b_events.tsv @@ -0,0 +1 @@ +onset duration trial_type response_time stim_file TODO -- fill in rows and add more tab-separated columns if desired \ No newline at end of file diff --git a/sub-06/ses-042/func/sub-06_ses-042_task-s06e02b_sbref.json b/sub-06/ses-042/func/sub-06_ses-042_task-s06e02b_sbref.json new file mode 100644 index 00000000000..ca626890e98 --- /dev/null +++ b/sub-06/ses-042/func/sub-06_ses-042_task-s06e02b_sbref.json @@ -0,0 +1,74 @@ +{ + "AcquisitionMatrixPE": 104, + "AcquisitionNumber": 1, + "AcquisitionTime": "16:05:16.855000", + "BandwidthPerPixelPhaseEncode": 17.17, + "BaseResolution": 104, + "BodyPartExamined": "BRAIN", + "CoilCombinationMethod": "Sum of Squares", + "ConsistencyInfo": "N4_VE11C_LATEST_20160120", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20230411", + "DerivedVendorReportedEchoSpacing": 0.000560011, + "DeviceSerialNumber": "167006", + "DwellTime": 2.1e-06, + "EchoTime": 0.037, + "EchoTrainLength": 104, + "EffectiveEchoSpacing": 0.000560011, + "FlipAngle": 52, + "HeudiconvVersion": "0.5.3.post801+g0eb836c", + "ImageComments": "Single-band reference", + "ImageOrientationPatientDICOM": [0.998783, -0.0439548, -0.0223738, 0.0341801, 0.943885, -0.3285], + "ImageOrientationText": "Tra>Cor(-19.1)>Sag(-2.0)", + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "ND", + "MOSAIC" +], + "ImagingFrequency": 123.258824, + "InPlanePhaseEncodingDirectionDICOM": "COL", + "InstitutionAddress": "Chemin Queen-Mary 4565,Montreal,District,CA,H3W 1W5", + "InstitutionName": "IUGM", + "InstitutionalDepartmentName": "Department", + "MRAcquisitionType": "2D", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma_fit", + "MatrixCoilMode": "SENSE", + "Modality": "MR", + "NonlinearGradientCorrection": false, + "PartialFourier": 1, + "PatientPosition": "HFS", + "PercentPhaseFOV": 100, + "PercentSampling": 100, + "PhaseEncodingDirection": "j", + "PhaseEncodingSteps": 104, + "PhaseResolution": 1, + "PixelBandwidth": 2290, + "ProcedureStepDescription": "video^friends", + "ProtocolName": "func_task-friends-s06e02b", + "PulseSequenceDetails": "%CustomerSeq%\\cmrr_mbep2d_bold", + "ReceiveCoilActiveElements": "HC1-7;NC1,2", + "ReceiveCoilName": "HeadNeck_64", + "ReconMatrixPE": 104, + "RepetitionTime": 1.49, + "SAR": 0.0358203, + "ScanOptions": "FS", + "ScanningSequence": "EP", + "SequenceName": "epfid2d1_104", + "SequenceVariant": "SK\\SS", + "SeriesDescription": "func_task-friends-s06e02b_SBRef", + "SeriesNumber": 17, + "ShimSetting": [617, -7267, -8823, 582, -20, -261, 0, -41], + "SliceThickness": 2, + "SliceTiming": [0, 0.0975, 0.195, 0.295, 0.3925, 0.49, 0.5875, 0.685, 0.785, 0.8825, 0.98, 1.0775, 1.175, 1.2725, 1.3725, 1.47, 1.5675, 1.665, 1.7625, 1.8625, 1.96, 2.0575, 2.155, 2.2525, 2.3525, 2.45, 2.5475, 2.645, 2.7425, 2.8425, 2.94, 3.0375, 3.135, 3.2325, 3.3325, 3.43, 3.5275, 3.625, 3.7225, 3.8225, 3.92, 4.0175, 4.115, 4.2125, 4.3125, 4.41, 4.5075, 4.605, 4.7025, 4.8025, 4.9, 4.9975, 5.095, 5.1925, 5.2925, 5.39, 5.4875, 5.585, 5.6825, 5.78], + "SoftwareVersions": "syngo MR E11", + "SpacingBetweenSlices": 2, + "StationName": "MRC35049", + "TaskName": "s06e02b", + "TotalReadoutTime": 0.0576811, + "TxRefAmp": 233.878, + "WipMemBlock": "1e5c3b7b-50f5-4002-806a-c8f240164c5f||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja" +} \ No newline at end of file diff --git a/sub-06/ses-042/func/sub-06_ses-042_task-s06e02b_sbref.nii.gz b/sub-06/ses-042/func/sub-06_ses-042_task-s06e02b_sbref.nii.gz new file mode 120000 index 00000000000..7f16bf4fdbb --- /dev/null +++ b/sub-06/ses-042/func/sub-06_ses-042_task-s06e02b_sbref.nii.gz @@ -0,0 +1 @@ +../../../.git/annex/objects/1p/qq/SHA256E-s1089374--68f4d08110e720f2c3b8bfef42e8dda1997311c7d8c5e633efcf28139724a8df.nii.gz/SHA256E-s1089374--68f4d08110e720f2c3b8bfef42e8dda1997311c7d8c5e633efcf28139724a8df.nii.gz \ No newline at end of file diff --git a/sub-06/ses-042/sub-06_ses-042_scans.tsv b/sub-06/ses-042/sub-06_ses-042_scans.tsv index 3aeb1b0011e..69b91f02c68 120000 --- a/sub-06/ses-042/sub-06_ses-042_scans.tsv +++ b/sub-06/ses-042/sub-06_ses-042_scans.tsv @@ -1 +1 @@ -../../.git/annex/objects/9J/jg/SHA256E-s1076--7bddf61a877d2737d27b0321b8c686ccc9cf3ca01e193cf1e3b3cce893efc171.tsv/SHA256E-s1076--7bddf61a877d2737d27b0321b8c686ccc9cf3ca01e193cf1e3b3cce893efc171.tsv \ No newline at end of file +../../.git/annex/objects/z7/2x/SHA256E-s1614--b5d0a29ad6a863774a7a1b9e7bea19f04c78d5ffa93042bbf8205cc2164fe9f3.tsv/SHA256E-s1614--b5d0a29ad6a863774a7a1b9e7bea19f04c78d5ffa93042bbf8205cc2164fe9f3.tsv \ No newline at end of file diff --git a/task-s06e02a_bold.json b/task-s06e02a_bold.json index 1b28a210c66..b9ffe2d4a1b 100644 --- a/task-s06e02a_bold.json +++ b/task-s06e02a_bold.json @@ -22,7 +22,6 @@ "ND", "MOSAIC" ], - "ImagingFrequency": 123.259, "InPlanePhaseEncodingDirectionDICOM": "COL", "InstitutionName": "IUGM", "InstitutionalDepartmentName": "Department", @@ -52,13 +51,4 @@ "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "TV series watching: Friends s06e02", - "TotalReadoutTime": 0.0576811, - "dcmmeta_reorient_transform": [ - [0.0, -1.0, 0.0, 103.0], - [1.0, 0.0, 0.0, 0.0], - [0.0, 0.0, 1.0, 0.0], - [0.0, 0.0, 0.0, 1.0] -], - "dcmmeta_shape": [104, 104, 60, 453], - "dcmmeta_slice_dim": 2, - "dcmmeta_version": 0.6} \ No newline at end of file + "TotalReadoutTime": 0.0576811} \ No newline at end of file diff --git a/task-s06e02b_bold.json b/task-s06e02b_bold.json index 88cdccf8559..4720fc9c64d 100644 --- a/task-s06e02b_bold.json +++ b/task-s06e02b_bold.json @@ -22,7 +22,6 @@ "ND", "MOSAIC" ], - "ImagingFrequency": 123.259, "InPlanePhaseEncodingDirectionDICOM": "COL", "InstitutionName": "IUGM", "InstitutionalDepartmentName": "Department", @@ -52,13 +51,4 @@ "SpacingBetweenSlices": 2, "StationName": "MRC35049", "TaskName": "TV series watching: Friends s06e02", - "TotalReadoutTime": 0.0576811, - "dcmmeta_reorient_transform": [ - [0.0, -1.0, 0.0, 103.0], - [1.0, 0.0, 0.0, 0.0], - [0.0, 0.0, 1.0, 0.0], - [0.0, 0.0, 0.0, 1.0] -], - "dcmmeta_shape": [104, 104, 60, 487], - "dcmmeta_slice_dim": 2, - "dcmmeta_version": 0.6} \ No newline at end of file + "TotalReadoutTime": 0.0576811} \ No newline at end of file