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Update tidyselect usage in evalcast #611

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brookslogan opened this issue Jan 13, 2023 · 0 comments
Open

Update tidyselect usage in evalcast #611

brookslogan opened this issue Jan 13, 2023 · 0 comments
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evalcast package good first issue Good for newcomers

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@brookslogan
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brookslogan commented Jan 13, 2023 •
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Update tidyselect usage in evalcast, as was done for covidcast. The check warnings state the changes that should be made.

Relevant check warnings (use `devtools::test()` locally to get up-to-date line numbers): 
── Warning ('test-evaluate_predictions.R:41'): evaluate_covid_predictions evaluates against downloaded data ──
Use of .data in tidyselect expressions was deprecated in tidyselect 1.2.0.
ℹ Please use `"forecast_date"` instead of `.data$forecast_date`
Backtrace:
  1. evalcast::evaluate_covid_predictions(pcard, geo_type = "state")
       at test-evaluate_predictions.R:41:4
  2. evalcast:::get_covidcast_data(...)
  7. dplyr:::select.data.frame(predictions_cards, .data$forecast_date)
 10. tidyselect::eval_select(expr(c(...)), .data)
 11. tidyselect:::eval_select_impl(...)
 15. tidyselect:::vars_select_eval(...)
 16. tidyselect:::walk_data_tree(expr, data_mask, context_mask)
 17. tidyselect:::eval_c(expr, data_mask, context_mask)
 18. tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
 19. tidyselect:::walk_data_tree(new, data_mask, context_mask)
 20. tidyselect:::expr_kind(expr, context_mask, error_call)
 21. tidyselect:::call_kind(expr, context_mask, error_call)
── Warning ('test-evaluate_predictions.R:41'): evaluate_covid_predictions evaluates against downloaded data ──
Use of .data in tidyselect expressions was deprecated in tidyselect 1.2.0.
ℹ Please use `"geo_value"` instead of `.data$geo_value`
Backtrace:
  1. evalcast::evaluate_covid_predictions(pcard, geo_type = "state")
       at test-evaluate_predictions.R:41:4
  2. evalcast:::get_covidcast_data(...)
  7. dplyr:::select.data.frame(predictions_cards, .data$geo_value)
 10. tidyselect::eval_select(expr(c(...)), .data)
 11. tidyselect:::eval_select_impl(...)
 15. tidyselect:::vars_select_eval(...)
 16. tidyselect:::walk_data_tree(expr, data_mask, context_mask)
 17. tidyselect:::eval_c(expr, data_mask, context_mask)
 18. tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
 19. tidyselect:::walk_data_tree(new, data_mask, context_mask)
 20. tidyselect:::expr_kind(expr, context_mask, error_call)
 21. tidyselect:::call_kind(expr, context_mask, error_call)
── Warning ('test-evaluate_predictions.R:41'): evaluate_covid_predictions evaluates against downloaded data ──
Use of .data in tidyselect expressions was deprecated in tidyselect 1.2.0.
ℹ Please use `"start"` instead of `.data$start`
Backtrace:
  1. evalcast::evaluate_covid_predictions(pcard, geo_type = "state")
       at test-evaluate_predictions.R:41:4
 11. dplyr:::rename.data.frame(., start_day = .data$start, end_day = .data$end)
 12. tidyselect::eval_rename(expr(c(...)), .data)
 13. tidyselect:::rename_impl(...)
 14. tidyselect:::eval_select_impl(...)
 18. tidyselect:::vars_select_eval(...)
 19. tidyselect:::walk_data_tree(expr, data_mask, context_mask)
 20. tidyselect:::eval_c(expr, data_mask, context_mask)
 21. tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
 22. tidyselect:::walk_data_tree(new, data_mask, context_mask)
 23. tidyselect:::expr_kind(expr, context_mask, error_call)
 24. tidyselect:::call_kind(expr, context_mask, error_call)
── Warning ('test-evaluate_predictions.R:41'): evaluate_covid_predictions evaluates against downloaded data ──
Use of .data in tidyselect expressions was deprecated in tidyselect 1.2.0.
ℹ Please use `"end"` instead of `.data$end`
Backtrace:
  1. evalcast::evaluate_covid_predictions(pcard, geo_type = "state")
       at test-evaluate_predictions.R:41:4
 11. dplyr:::rename.data.frame(., start_day = .data$start, end_day = .data$end)
 12. tidyselect::eval_rename(expr(c(...)), .data)
 13. tidyselect:::rename_impl(...)
 14. tidyselect:::eval_select_impl(...)
 18. tidyselect:::vars_select_eval(...)
 19. tidyselect:::walk_data_tree(expr, data_mask, context_mask)
 20. tidyselect:::eval_c(expr, data_mask, context_mask)
 21. tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
 22. tidyselect:::walk_data_tree(new, data_mask, context_mask)
 23. tidyselect:::expr_kind(expr, context_mask, error_call)
 24. tidyselect:::call_kind(expr, context_mask, error_call)
── Warning ('test-evaluate_predictions.R:41'): evaluate_covid_predictions evaluates against downloaded data ──
Use of .data in tidyselect expressions was deprecated in tidyselect 1.2.0.
ℹ Please use `"quantile"` instead of `.data$quantile`
Backtrace:
  1. evalcast::evaluate_covid_predictions(pcard, geo_type = "state")
       at test-evaluate_predictions.R:41:4
  6. dplyr:::relocate.data.frame(., .data$quantile:.data$value, .after = .data$geo_value)
  7. tidyselect::eval_select(expr(c(...)), .data)
  8. tidyselect:::eval_select_impl(...)
 12. tidyselect:::vars_select_eval(...)
 13. tidyselect:::walk_data_tree(expr, data_mask, context_mask)
 14. tidyselect:::eval_c(expr, data_mask, context_mask)
 15. tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
 16. tidyselect:::walk_data_tree(new, data_mask, context_mask)
 17. tidyselect:::eval_colon(expr, data_mask, context_mask)
 18. tidyselect:::walk_data_tree(...)
 19. tidyselect:::expr_kind(expr, context_mask, error_call)
 20. tidyselect:::call_kind(expr, context_mask, error_call)
── Warning ('test-evaluate_predictions.R:41'): evaluate_covid_predictions evaluates against downloaded data ──
Use of .data in tidyselect expressions was deprecated in tidyselect 1.2.0.
ℹ Please use `"value"` instead of `.data$value`
Backtrace:
  1. evalcast::evaluate_covid_predictions(pcard, geo_type = "state")
       at test-evaluate_predictions.R:41:4
  6. dplyr:::relocate.data.frame(., .data$quantile:.data$value, .after = .data$geo_value)
  7. tidyselect::eval_select(expr(c(...)), .data)
  8. tidyselect:::eval_select_impl(...)
 12. tidyselect:::vars_select_eval(...)
 13. tidyselect:::walk_data_tree(expr, data_mask, context_mask)
 14. tidyselect:::eval_c(expr, data_mask, context_mask)
 15. tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
 16. tidyselect:::walk_data_tree(new, data_mask, context_mask)
 17. tidyselect:::eval_colon(expr, data_mask, context_mask)
 18. tidyselect:::walk_data_tree(...)
 19. tidyselect:::expr_kind(expr, context_mask, error_call)
 20. tidyselect:::call_kind(expr, context_mask, error_call)
── Warning ('test-evaluate_predictions.R:41'): evaluate_covid_predictions evaluates against downloaded data ──
Use of .data in tidyselect expressions was deprecated in tidyselect 1.2.0.
ℹ Please use `"ahead"` instead of `.data$ahead`
Backtrace:
  1. evalcast::evaluate_covid_predictions(pcard, geo_type = "state")
       at test-evaluate_predictions.R:41:4
  4. dplyr:::relocate.data.frame(...)
  5. tidyselect::eval_select(expr(c(...)), .data)
  6. tidyselect:::eval_select_impl(...)
 10. tidyselect:::vars_select_eval(...)
 11. tidyselect:::walk_data_tree(expr, data_mask, context_mask)
 12. tidyselect:::eval_c(expr, data_mask, context_mask)
 13. tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
 14. tidyselect:::walk_data_tree(new, data_mask, context_mask)
 15. tidyselect:::expr_kind(expr, context_mask, error_call)
 16. tidyselect:::call_kind(expr, context_mask, error_call)
── Warning ('test-evaluate_predictions.R:41'): evaluate_covid_predictions evaluates against downloaded data ──
Use of .data in tidyselect expressions was deprecated in tidyselect 1.2.0.
ℹ Please use `"forecaster"` instead of `.data$forecaster`
Backtrace:
  1. evalcast::evaluate_covid_predictions(pcard, geo_type = "state")
       at test-evaluate_predictions.R:41:4
  4. dplyr:::relocate.data.frame(...)
  5. tidyselect::eval_select(expr(c(...)), .data)
  6. tidyselect:::eval_select_impl(...)
 10. tidyselect:::vars_select_eval(...)
 11. tidyselect:::walk_data_tree(expr, data_mask, context_mask)
 12. tidyselect:::eval_c(expr, data_mask, context_mask)
 13. tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
 14. tidyselect:::walk_data_tree(new, data_mask, context_mask)
 15. tidyselect:::expr_kind(expr, context_mask, error_call)
 16. tidyselect:::call_kind(expr, context_mask, error_call)
── Warning ('test-evaluate_predictions.R:41'): evaluate_covid_predictions evaluates against downloaded data ──
Use of .data in tidyselect expressions was deprecated in tidyselect 1.2.0.
ℹ Please use `"data_source"` instead of `.data$data_source`
Backtrace:
  1. evalcast::evaluate_covid_predictions(pcard, geo_type = "state")
       at test-evaluate_predictions.R:41:4
  4. dplyr:::relocate.data.frame(...)
  5. tidyselect::eval_select(expr(c(...)), .data)
  6. tidyselect:::eval_select_impl(...)
 10. tidyselect:::vars_select_eval(...)
 11. tidyselect:::walk_data_tree(expr, data_mask, context_mask)
 12. tidyselect:::eval_c(expr, data_mask, context_mask)
 13. tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
 14. tidyselect:::walk_data_tree(new, data_mask, context_mask)
 15. tidyselect:::expr_kind(expr, context_mask, error_call)
 16. tidyselect:::call_kind(expr, context_mask, error_call)
── Warning ('test-evaluate_predictions.R:41'): evaluate_covid_predictions evaluates against downloaded data ──
Use of .data in tidyselect expressions was deprecated in tidyselect 1.2.0.
ℹ Please use `"signal"` instead of `.data$signal`
Backtrace:
  1. evalcast::evaluate_covid_predictions(pcard, geo_type = "state")
       at test-evaluate_predictions.R:41:4
  4. dplyr:::relocate.data.frame(...)
  5. tidyselect::eval_select(expr(c(...)), .data)
  6. tidyselect:::eval_select_impl(...)
 10. tidyselect:::vars_select_eval(...)
 11. tidyselect:::walk_data_tree(expr, data_mask, context_mask)
 12. tidyselect:::eval_c(expr, data_mask, context_mask)
 13. tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
 14. tidyselect:::walk_data_tree(new, data_mask, context_mask)
 15. tidyselect:::expr_kind(expr, context_mask, error_call)
 16. tidyselect:::call_kind(expr, context_mask, error_call)
── Warning ('test-evaluate_predictions.R:41'): evaluate_covid_predictions evaluates against downloaded data ──
Use of .data in tidyselect expressions was deprecated in tidyselect 1.2.0.
ℹ Please use `"target_end_date"` instead of `.data$target_end_date`
Backtrace:
  1. evalcast::evaluate_covid_predictions(pcard, geo_type = "state")
       at test-evaluate_predictions.R:41:4
  4. dplyr:::relocate.data.frame(...)
  5. tidyselect::eval_select(expr(c(...)), .data)
  6. tidyselect:::eval_select_impl(...)
 10. tidyselect:::vars_select_eval(...)
 11. tidyselect:::walk_data_tree(expr, data_mask, context_mask)
 12. tidyselect:::eval_c(expr, data_mask, context_mask)
 13. tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
 14. tidyselect:::walk_data_tree(new, data_mask, context_mask)
 15. tidyselect:::expr_kind(expr, context_mask, error_call)
 16. tidyselect:::call_kind(expr, context_mask, error_call)
── Warning ('test-evaluate_predictions.R:41'): evaluate_covid_predictions evaluates against downloaded data ──
Use of .data in tidyselect expressions was deprecated in tidyselect 1.2.0.
ℹ Please use `"incidence_period"` instead of `.data$incidence_period`
Backtrace:
  1. evalcast::evaluate_covid_predictions(pcard, geo_type = "state")
       at test-evaluate_predictions.R:41:4
  4. dplyr:::relocate.data.frame(...)
  5. tidyselect::eval_select(expr(c(...)), .data)
  6. tidyselect:::eval_select_impl(...)
 10. tidyselect:::vars_select_eval(...)
 11. tidyselect:::walk_data_tree(expr, data_mask, context_mask)
 12. tidyselect:::eval_c(expr, data_mask, context_mask)
 13. tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
 14. tidyselect:::walk_data_tree(new, data_mask, context_mask)
 15. tidyselect:::expr_kind(expr, context_mask, error_call)
 16. tidyselect:::call_kind(expr, context_mask, error_call)
── Warning ('test-evaluate_predictions.R:41'): evaluate_covid_predictions evaluates against downloaded data ──
Use of .data in tidyselect expressions was deprecated in tidyselect 1.2.0.
ℹ Please use `"actual"` instead of `.data$actual`
Backtrace:
  1. evalcast::evaluate_covid_predictions(pcard, geo_type = "state")
       at test-evaluate_predictions.R:41:4
  4. dplyr:::relocate.data.frame(...)
  5. tidyselect::eval_select(expr(c(...)), .data)
  6. tidyselect:::eval_select_impl(...)
 10. tidyselect:::vars_select_eval(...)
 11. tidyselect:::walk_data_tree(expr, data_mask, context_mask)
 12. tidyselect:::eval_c(expr, data_mask, context_mask)
 13. tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
 14. tidyselect:::walk_data_tree(new, data_mask, context_mask)
 15. tidyselect:::expr_kind(expr, context_mask, error_call)
 16. tidyselect:::call_kind(expr, context_mask, error_call)
── Warning ('test-plot_coverage.R:42'): plot_coverage default plotting args type all ──
Use of .data in tidyselect expressions was deprecated in tidyselect 1.2.0.
ℹ Please use `"name"` instead of `.data$name`
Backtrace:
  1. vdiffr::expect_doppelganger(...)
       at test-plot_coverage.R:42:4
  9. dplyr:::select.data.frame(., .data$name)
 12. tidyselect::eval_select(expr(c(...)), .data)
 13. tidyselect:::eval_select_impl(...)
 17. tidyselect:::vars_select_eval(...)
 18. tidyselect:::walk_data_tree(expr, data_mask, context_mask)
 19. tidyselect:::eval_c(expr, data_mask, context_mask)
 20. tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
 21. tidyselect:::walk_data_tree(new, data_mask, context_mask)
 22. tidyselect:::expr_kind(expr, context_mask, error_call)
 23. tidyselect:::call_kind(expr, context_mask, error_call)
── Warning ('test-plot_coverage.R:42'): plot_coverage default plotting args type all ──
Use of .data in tidyselect expressions was deprecated in tidyselect 1.2.0.
ℹ Please use `"is_above"` instead of `.data$is_above`
Backtrace:
  1. vdiffr::expect_doppelganger(...)
       at test-plot_coverage.R:42:4
 10. dplyr:::select.data.frame(...)
 13. tidyselect::eval_select(expr(c(...)), .data)
 14. tidyselect:::eval_select_impl(...)
 18. tidyselect:::vars_select_eval(...)
 19. tidyselect:::walk_data_tree(expr, data_mask, context_mask)
 20. tidyselect:::eval_c(expr, data_mask, context_mask)
 21. tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
 22. tidyselect:::walk_data_tree(new, data_mask, context_mask)
 23. tidyselect:::expr_kind(expr, context_mask, error_call)
 24. tidyselect:::call_kind(expr, context_mask, error_call)
── Warning ('test-plot_coverage.R:42'): plot_coverage default plotting args type all ──
Use of .data in tidyselect expressions was deprecated in tidyselect 1.2.0.
ℹ Please use `"is_below"` instead of `.data$is_below`
Backtrace:
  1. vdiffr::expect_doppelganger(...)
       at test-plot_coverage.R:42:4
 10. dplyr:::select.data.frame(...)
 13. tidyselect::eval_select(expr(c(...)), .data)
 14. tidyselect:::eval_select_impl(...)
 18. tidyselect:::vars_select_eval(...)
 19. tidyselect:::walk_data_tree(expr, data_mask, context_mask)
 20. tidyselect:::eval_c(expr, data_mask, context_mask)
 21. tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
 22. tidyselect:::walk_data_tree(new, data_mask, context_mask)
 23. tidyselect:::expr_kind(expr, context_mask, error_call)
 24. tidyselect:::call_kind(expr, context_mask, error_call)
── Warning ('test-plot_coverage.R:42'): plot_coverage default plotting args type all ──
Use of .data in tidyselect expressions was deprecated in tidyselect 1.2.0.
ℹ Please use `"is_covered"` instead of `.data$is_covered`
Backtrace:
  1. vdiffr::expect_doppelganger(...)
       at test-plot_coverage.R:42:4
 10. dplyr:::select.data.frame(...)
 13. tidyselect::eval_select(expr(c(...)), .data)
 14. tidyselect:::eval_select_impl(...)
 18. tidyselect:::vars_select_eval(...)
 19. tidyselect:::walk_data_tree(expr, data_mask, context_mask)
 20. tidyselect:::eval_c(expr, data_mask, context_mask)
 21. tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
 22. tidyselect:::walk_data_tree(new, data_mask, context_mask)
 23. tidyselect:::expr_kind(expr, context_mask, error_call)
 24. tidyselect:::call_kind(expr, context_mask, error_call)
── Warning ('test-plot_coverage.R:42'): plot_coverage default plotting args type all ──
Use of .data in tidyselect expressions was deprecated in tidyselect 1.2.0.
ℹ Please use `"nominal_prob"` instead of `.data$nominal_prob`
Backtrace:
  1. vdiffr::expect_doppelganger(...)
       at test-plot_coverage.R:42:4
 10. dplyr:::select.data.frame(...)
 13. tidyselect::eval_select(expr(c(...)), .data)
 14. tidyselect:::eval_select_impl(...)
 18. tidyselect:::vars_select_eval(...)
 19. tidyselect:::walk_data_tree(expr, data_mask, context_mask)
 20. tidyselect:::eval_c(expr, data_mask, context_mask)
 21. tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
 22. tidyselect:::walk_data_tree(new, data_mask, context_mask)
 23. tidyselect:::expr_kind(expr, context_mask, error_call)
 24. tidyselect:::call_kind(expr, context_mask, error_call)
── Warning ('test-plot_coverage.R:42'): plot_coverage default plotting args type all ──
Adding new file snapshot: 'tests/testthat/_snaps/plot-default-args-type-all.svg'
── Warning ('test-plot_coverage.R:58'): plot_coverage custom facets type all ───
Adding new file snapshot: 'tests/testthat/_snaps/plot-custom-facets-one-type-all.svg'
── Warning ('test-plot_coverage.R:72'): plot_coverage custom facets type all ───
Adding new file snapshot: 'tests/testthat/_snaps/plot-custom-facets-two-type-all.svg'
── Warning ('test-predictions_processing.R:83'): desired prediction card columns are kept and reordered ──
Use of .data in tidyselect expressions was deprecated in tidyselect 1.2.0.
ℹ Please use `"location"` instead of `.data$location`
Backtrace:
  1. evalcast:::select_pcard_cols(preds_in)
       at test-predictions_processing.R:83:2
  4. dplyr:::select.data.frame(...)
  7. tidyselect::eval_select(expr(c(...)), .data)
  8. tidyselect:::eval_select_impl(...)
 12. tidyselect:::vars_select_eval(...)
 13. tidyselect:::walk_data_tree(expr, data_mask, context_mask)
 14. tidyselect:::eval_c(expr, data_mask, context_mask)
 15. tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
 16. tidyselect:::walk_data_tree(new, data_mask, context_mask)
 17. tidyselect:::expr_kind(expr, context_mask, error_call)
 18. tidyselect:::call_kind(expr, context_mask, error_call)
── Warning ('test-scale_by_forecaster.R:16'): scale_by_forecaster works on score_cards ──
Using an external vector in selections was deprecated in tidyselect 1.1.0.
ℹ Please use `all_of()` or `any_of()` instead.
  # Was:
  data %>% select(var)

  # Now:
  data %>% select(all_of(var))

See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
Backtrace:
  1. evalcast::scale_by_forecaster(score_card, c("ae", "wis"), "f2")
       at test-scale_by_forecaster.R:16:4
 14. tidyr:::pivot_wider.data.frame(...)
 15. tidyr::build_wider_spec(...)
 16. tidyselect::eval_select(enquo(values_from), data)
 17. tidyselect:::eval_select_impl(...)
 21. tidyselect:::vars_select_eval(...)
 22. tidyselect:::walk_data_tree(expr, data_mask, context_mask)
 23. tidyselect:::eval_sym(expr, data_mask, context_mask)

Probably not time-sensitive: the tidyselect changelog does not mention that these will turn into errors soon.
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