ci.yaml

name: CI
on:
  push:
    branches:
      - main
  pull_request:
    types: [opened, synchronize, reopened]
jobs:
  lint:
    name: Lint
    runs-on: ubuntu-latest
    steps:
      - name: Checkout
        uses: actions/checkout@v4
      - name: Setup Python 3.11
        uses: actions/setup-python@v5
        with:
          python-version: 3.11
          cache: pip
      - name: Install dependencies
        run: |
          pip install '.[dev]'
      - name: Black formatting
        run: black --check clinvar_gk_pilot
      - name: Sort imports
        run: isort --check-only clinvar_gk_pilot
      - name: Ruff lint
        run: ruff check clinvar_gk_pilot
      # Pylint catches some things that Ruff doesn't yet support
      # Run error-only mode `--disable=C,R,W` == `-E`
      - name: Pylint
        run: pylint --disable=C,R,W clinvar_gk_pilot
  test:
    name: Run tests
    runs-on: ubuntu-latest
    steps:
      - name: Checkout
        uses: actions/checkout@v4
      - name: Setup Python 3.11
        uses: actions/setup-python@v5
        with:
          python-version: 3.11
          cache: pip
      - name: Install dependencies
        run: |
          pip install '.[dev]'
      - name: Run tests
        run: pytest -v