From ad4edaa5cc8c2354c1d4aefeea2052f7fefdb577 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Gordon=20J=2E=20K=C3=B6hn?= Date: Fri, 11 Oct 2024 13:54:03 +0200 Subject: [PATCH] =?UTF-8?q?erratum=20=E2=80=93=20string=20formating=20smk?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- workflow/rules/signatures.smk | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflow/rules/signatures.smk b/workflow/rules/signatures.smk index 316edd1e..55e0b96f 100644 --- a/workflow/rules/signatures.smk +++ b/workflow/rules/signatures.smk @@ -362,7 +362,7 @@ rule deconvolution: threads: config.deconvolution["threads"] shell: """ - {params.LOLLIPOP} deconvolute "--output={output.deconvoluted}" "--out-json={output.deconv_json}" "--var={input.var_conf}" "--vd={input.var_dates}" "--dec={input.deconv_conf}" "--filters={input.filters}" {params.out_format} --seed={params.seed} --n-cores={threads} "{input.tallymut}" 2> >(tee -a {log.errfile} >&2) > >(tee -a {log.outfile}) + {params.LOLLIPOP} deconvolute "--output={output.deconvoluted}" "--out-json={output.deconv_json}" "--var={input.var_conf}" "--vd={input.var_dates}" "--dec={input.deconv_conf}" "--filters={input.filters}" {params.out_format} {params.seed} "--n-cores={threads}" "{input.tallymut}" 2> >(tee -a {log.errfile} >&2) > >(tee -a {log.outfile}) """