diff --git a/workflows/mark03.smk b/workflows/mark03.smk index bf6bdfe8..ca3099b5 100644 --- a/workflows/mark03.smk +++ b/workflows/mark03.smk @@ -17,14 +17,14 @@ from pyggdrasil.tree_inference import CellSimulationId, TreeType, TreeId, McmcCo ##################### # Environment variables -DATADIR = "../data" -#DATADIR = "/cluster/work/bewi/members/gkoehn/data" +#DATADIR = "../data" +DATADIR = "/cluster/work/bewi/members/gkoehn/data" ##################### experiment = "mark03" # Metrics: Distances / Similarity Measure to use -metrics = ["MP3", "AD", "log_prob", "DL"] # <-- configure distances here +metrics = ["AD", "log_prob", "DL"] # also MP3 <-- configure distances here ##################### # Error Parameters @@ -64,7 +64,7 @@ CS_seed = 42 # <-- configure cell simulation seed here ##################### # True Tree Parameters tree_types = ["r"] # <-- configure tree type here ["r","s","d"] -tree_seeds = [42] # <-- configure tree seed here +tree_seeds = [42,34] # <-- configure tree seed here ##################### ##################### diff --git a/workflows/tree_inference.smk b/workflows/tree_inference.smk index 918ee7f7..e0eaa445 100644 --- a/workflows/tree_inference.smk +++ b/workflows/tree_inference.smk @@ -19,9 +19,9 @@ from pyggdrasil.tree_inference import ( ############################################### ## Relative path from DATADIR to the repo root -#REPODIR = "/cluster/work/bewi/members/gkoehn/repos/PYggdrasil" -REPODIR = ".." -#DATADIR = "/cluster/work/bewi/members/gkoehn/data" +REPODIR = "/cluster/work/bewi/members/gkoehn/repos/PYggdrasil" +#REPODIR = ".." +DATADIR = "/cluster/work/bewi/members/gkoehn/data" ###############################################