diff --git a/workflows/mark02.smk b/workflows/mark02.smk
index a5c9f02a..970e2f42 100644
--- a/workflows/mark02.smk
+++ b/workflows/mark02.smk
@@ -61,7 +61,7 @@ CS_seed = 42 # <-- configure cell simulation seed here
 #####################
 # True Tree Parameters
 tree_types = ["r"] # <-- configure tree type here ["r","s","d"]
-tree_seeds = [42]#, 34] # <-- configure tree seed here
+tree_seeds = [42, 34] # <-- configure tree seed here
 
 #####################
 #####################
@@ -242,17 +242,17 @@ rule combined_chain_histogram:
             sublist = [float(x) for x in sublist]
 
             # Create histogram for the sublist with the color and label
-            ax.hist(sublist,bins='auto', range = (0,1),alpha=0.5,color=colors[color_index],label=labels[i])
+            ax.hist(sublist, bins='auto', range = (0,1),alpha=0.5,color=colors[color_index],label=labels[i])
 
         # Set labels and title
         ax.set_xlabel(f"Similarity: {wildcards.metric}")
         ax.set_ylabel('Frequency')
 
         # Add a legend
-        ax.legend()
+        ax.legend(bbox_to_anchor = (1.04, 0.5), loc = "center left", borderaxespad = 0)
 
         # save the histogram
-        fig.savefig(Path(output.combined_chain_histogram))
+        fig.savefig(Path(output.combined_chain_histogram), bbox_inches="tight")
 
 
 
diff --git a/workflows/tree_inference.smk b/workflows/tree_inference.smk
index 918ee7f7..92ff1943 100644
--- a/workflows/tree_inference.smk
+++ b/workflows/tree_inference.smk
@@ -19,9 +19,8 @@ from pyggdrasil.tree_inference import (
 ###############################################
 ## Relative path from DATADIR to the repo root
 
-#REPODIR = "/cluster/work/bewi/members/gkoehn/repos/PYggdrasil"
-REPODIR = ".."
-#DATADIR = "/cluster/work/bewi/members/gkoehn/data"
+REPODIR = "/cluster/work/bewi/members/gkoehn/repos/PYggdrasil"
+DATADIR = "/cluster/work/bewi/members/gkoehn/data"
 
 ###############################################