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Implement boomer workflow for data model harmonization #5

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balhoff opened this issue Aug 1, 2020 · 5 comments
Open

Implement boomer workflow for data model harmonization #5

balhoff opened this issue Aug 1, 2020 · 5 comments
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@balhoff
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balhoff commented Aug 1, 2020

Some folks on the data model team (@mbrush, @bfurner) expressed interest in testing the boomer tool for evaluating mappings between data model elements. It should be straightforward to set this up, so we should give it a try and see if it is a useful approach.

@balhoff balhoff added this to the Phase 2 - Quarter 3 milestone Aug 1, 2020
@balhoff balhoff self-assigned this Aug 1, 2020
@balhoff
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balhoff commented Oct 13, 2020

I'm going to move this to Q4, as the data model development isn't currently ready to try this sort of approach.

@gaurav
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gaurav commented Jul 6, 2021

@balhoff: What do you need from the model to try this out in quarter?

@balhoff
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balhoff commented Jul 8, 2021

This would make sense if we wanted to make sense of a collection of mutual mappings across several models, especially if one or more of the models constituted a hierarchy.

@gaurav
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gaurav commented Sep 2, 2021

Tools discussion: this is probably not very useful right now, but we want to get the Boomer workflows working well, so eventually we can have a workflow for checking mappings between entities. Boomer needs some kind of class hierarchy -- without that, all we can look for is whether the multiple properties are mapped to the same property. What we really need is:

  1. Hierarchies for CRDCH, GDC, PDC, etc.
  2. Mappings between fields

With some custom code, you could create instance graphs according to proposed mappings and try a bunch of configurations and see which mappings work.

@gaurav
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gaurav commented Oct 1, 2021

Moving to the next quarter as it it dependent on cancerDHC/ccdhmodel#64.

@gaurav gaurav added this to the Phase 3 - Quarter 4 (2021) milestone Oct 1, 2021
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