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Duration: 1m 8.1s
❯ checking examples ... ERROR
Running examples in ‘claman-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot_volcano
> ### Title: Volcano plot
> ### Aliases: plot_volcano
>
> ### ** Examples
>
> library(dplyr)
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
> regression_significance <- diffex_mzroll(
+ nplug_mzroll_normalized,
+ "normalized_log2_abundance",
+ "limitation + limitation:DR + 0") %>%
+ dplyr::left_join(
+ nplug_mzroll_normalized$features %>% select(groupId, compoundName),
+ by = "groupId")
Warning: There was 1 warning in `dplyr::mutate()`.
ℹ In argument: `fdr_summary = purrr::map(term_data, diffex_fdr)`.
Caused by warning in `.f()`:
! q-value calculation initially failed due to too many small p-values
but claman was able to recover results
>
> plot_volcano(regression_significance, 10, 0.1, c("Ribose-P", "acetyl-CoA", "ATP"))
Warning in geom_point(aes(y = p.value.trans, color = is_discovery, name = compoundName)) :
Ignoring unknown aesthetics: name
Error in `plot_volcano()`:
! Cannot add <ggproto> objects together
ℹ Did you forget to add this object to a <ggplot> object?
Backtrace:
▆
1. └─claman::plot_volcano(...)
2. └─ggplot2:::`+.gg`(...)
3. └─cli::cli_abort(...)
4. └─rlang::abort(...)
Execution halted
There might be other issues.
The text was updated successfully, but these errors were encountered:
Error when checking build in R:
There might be other issues.
The text was updated successfully, but these errors were encountered: