[Errno 2] No such file or directory: out/source-in-sink.csv'

[0xBytefuzz]

I have a problem, and I can't solve it. I hope you can help me. This is my test file (sink.csv source.csv) and the command I execute is "python -m retropath2_wrapper sink.csv rules.csv out --source_file source.csv"
My environment

[niraito]

Hello @cn-lugen, were you able to solve it? Due to my WSL re-installation, I had to re-install retropath2_wrapper as well. Now I receive the same error as you.

Previous tutorial samples were carotene, naringenin, pinocembrin, and violacein. My command for carotene is:

python -m retropath2_wrapper sink.csv rules.csv out_carotene_5s_230523 --source_file source.csv --max_steps 5 --log DEBUG

... and the input files for carotene tutorial (rules.csv, sink.csv, source.csv) are attached.

The created output folder is empty. And I receive the following error for all previous and current tutorial sets (including lycopene and alanine):

ERROR    | 2023-05-23 15:52:35,907.907 RetroPath2 - check_src_in_sink_2(): [Errno 2] No such file or directory: '/mnt/d/nilay/phd/pathdeneme/retropath_ubuntu_tutorials/carotene/out_carotene_5s_230523/source-in-sink.csv'
INFO     | 2023-05-23 15:52:35,908.908 __main__ - _cli():
ERROR    | 2023-05-23 15:52:35,908.908 __main__ - _cli(): The following error occured: 1
ERROR    | 2023-05-23 15:52:35,908.908 __main__ - _cli(): Exiting...

For lycopene and alanine, I have used rules.csv.gz compressed file as rules. But, I believe the uncompression of the rule file is not the reason for this error.

The cause might be my environment, or is there an issue related to the codes in the RetroPath2_wrapper repository? Could anybody help us?

Thank you for your time,
Nilay