From 5b256d96f7b9ffaab5f4db7270ee3702d0baf02d Mon Sep 17 00:00:00 2001 From: ErinWeisbart Date: Mon, 24 Jan 2022 12:50:17 -0800 Subject: [PATCH] add single_cell_by_guide to normalize --- config/docs/options_README.md | 2 ++ config/options.yaml | 1 + 2 files changed, 3 insertions(+) diff --git a/config/docs/options_README.md b/config/docs/options_README.md index 378bf1a..1187403 100644 --- a/config/docs/options_README.md +++ b/config/docs/options_README.md @@ -243,6 +243,8 @@ e.g.* median Set to* true *or* false. `force_overwrite:` *Do you want to overwrite any existing data? Set to* true *or* false. +`output_single_cell_by_guide:` *Do you want to create an additional output of normalized single cell profiles saved on a per-guide basis? +Set to* true *or* false. `method:` *String indicating how the dataframe will be normalized. e.g.* standardize `levels:` *This step "normalizes" the features to exist on the same scale and range. The levels argument asks at which "profile" level is the normalization performed. e.g.* - gene diff --git a/config/options.yaml b/config/options.yaml index c1b63c6..3b15ab8 100644 --- a/config/options.yaml +++ b/config/options.yaml @@ -123,6 +123,7 @@ profile: normalize: perform: true force_overwrite: true + output_single_cell_by_guide: true method: standardize levels: - gene